RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 PPP1R15AO75807 674 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-219ENST00000556413 AAMPQ13685 434 aa7.8□□□□□ -1.16
SCFD1-219ENST00000556413 MCTP1Q6DN14 999 aa7.8□□□□□ -1.16
SCFD1-219ENST00000556413 PHLDB3Q6NSJ2 640 aa7.8□□□□□ -1.16
SCFD1-219ENST00000556413 BEND4Q6ZU67 534 aa7.8□□□□□ -1.16
SCFD1-219ENST00000556413 KRTAP4-12Q9BQ66 201 aa7.8□□□□□ -1.16
SCFD1-219ENST00000556413 KCNF1Q9H3M0 494 aa7.8□□□□□ -1.16
SCFD1-219ENST00000556413 FOXD3Q9UJU5 478 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-219ENST00000556413 MEGF11A6BM72 1044 aa7.79□□□□□ -1.16
SCFD1-219ENST00000556413 FZD6O60353 706 aa7.79□□□□□ -1.16
SCFD1-219ENST00000556413 FAM13AO94988 1023 aa7.79□□□□□ -1.16
SCFD1-219ENST00000556413 EDN3P14138 238 aa7.79□□□□□ -1.16
SCFD1-219ENST00000556413 EHHADHQ08426 723 aa7.79□□□□□ -1.16
SCFD1-219ENST00000556413 IKBKEQ14164 716 aa7.79□□□□□ -1.16
SCFD1-219ENST00000556413 FDX2Q6P4F2 183 aa7.79□□□□□ -1.16
SCFD1-219ENST00000556413 SNX29Q8TEQ0 813 aa7.79□□□□□ -1.16
SCFD1-219ENST00000556413 CARNS1A5YM72 827 aa7.78□□□□□ -1.16
SCFD1-219ENST00000556413 USP5P45974 858 aa7.78□□□□□ -1.16
SCFD1-219ENST00000556413 PEAR1Q5VY43 1037 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-219ENST00000556413 BHLHE41Q9C0J9 482 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-219ENST00000556413 LATS2Q9NRM7 1088 aa7.78□□□□□ -1.16
SCFD1-219ENST00000556413 HIF3AQ9Y2N7 669 aa7.78□□□□□ -1.16
SCFD1-219ENST00000556413 SPINK2P20155 84 aa7.77□□□□□ -1.17
SCFD1-219ENST00000556413 GRIK1P39086 918 aa7.77□□□□□ -1.17
SCFD1-219ENST00000556413 SF3B2Q13435 895 aaKnown RBP7.77□□□□□ -1.17
SCFD1-219ENST00000556413 INTS5Q6P9B9 1019 aaKnown RBP7.77□□□□□ -1.17
SCFD1-219ENST00000556413 SHKBP1Q8TBC3 707 aa7.77□□□□□ -1.17
SCFD1-219ENST00000556413 ASAP3Q8TDY4 903 aa7.77□□□□□ -1.17
SCFD1-219ENST00000556413 C1orf115Q9H7X2 142 aa7.77□□□□□ -1.17
SCFD1-219ENST00000556413 CCDC87Q9NVE4 849 aa7.77□□□□□ -1.17
SCFD1-219ENST00000556413 GTF3C3Q9Y5Q9 886 aa7.77□□□□□ -1.17
SCFD1-219ENST00000556413 OAS3Q9Y6K5 1087 aaKnown RBP7.77□□□□□ -1.17
SCFD1-219ENST00000556413 COL17A1Q9UMD9 1497 aaPredicted RBP7.76□□□□□ -1.17
SCFD1-219ENST00000556413 ADAMTS4O75173 837 aa7.76□□□□□ -1.17
SCFD1-219ENST00000556413 FKBP4Q02790 459 aaKnown RBP eCLIP7.76□□□□□ -1.17
SCFD1-219ENST00000556413 KRTAP1-3Q8IUG1 177 aa7.76□□□□□ -1.17
SCFD1-219ENST00000556413 GJD3Q8N144 294 aa7.76□□□□□ -1.17
SCFD1-219ENST00000556413 TMPRSS13Q9BYE2 586 aa7.76□□□□□ -1.17
SCFD1-219ENST00000556413 SOX17Q9H6I2 414 aaPredicted RBP7.76□□□□□ -1.17
SCFD1-219ENST00000556413 MTMR7Q9Y216 660 aa7.76□□□□□ -1.17
SCFD1-219ENST00000556413 AMOTL2Q9Y2J4 779 aa7.76□□□□□ -1.17
SCFD1-219ENST00000556413 LOC100289279A0A1B0GTE1 492 aa7.75□□□□□ -1.17
SCFD1-219ENST00000556413 GAS2O43903 313 aaKnown RBP7.75□□□□□ -1.17
SCFD1-219ENST00000556413 DLGAP3O95886 979 aa7.75□□□□□ -1.17
SCFD1-219ENST00000556413 ESRRAP11474 423 aaPredicted RBP7.75□□□□□ -1.17
SCFD1-219ENST00000556413 MAP4P27816 1152 aaKnown RBP7.75□□□□□ -1.17
SCFD1-219ENST00000556413 GP2P55259 537 aaKnown RBP7.75□□□□□ -1.17
SCFD1-219ENST00000556413 NUTM2GQ5VZR2 741 aa7.75□□□□□ -1.17
SCFD1-219ENST00000556413 DTX1Q86Y01 620 aa7.75□□□□□ -1.17
SCFD1-219ENST00000556413 C12orf50Q8NA57 414 aaPredicted RBP7.75□□□□□ -1.17
SCFD1-219ENST00000556413 USP26Q9BXU7 913 aa7.75□□□□□ -1.17
SCFD1-219ENST00000556413 ZFYVE28Q9HCC9 887 aa7.75□□□□□ -1.17
SCFD1-219ENST00000556413 ANO2Q9NQ90 1003 aa7.75□□□□□ -1.17
SCFD1-219ENST00000556413 METTL12A8MUP2 240 aa7.74□□□□□ -1.17
SCFD1-219ENST00000556413 TIAF1O95411 115 aa7.74□□□□□ -1.17
SCFD1-219ENST00000556413 ABL1P00519 1130 aa7.74□□□□□ -1.17
SCFD1-219ENST00000556413 ZNF211Q13398 564 aaPredicted RBP7.74□□□□□ -1.17
SCFD1-219ENST00000556413 SGO2Q562F6 1265 aa7.74□□□□□ -1.17
SCFD1-219ENST00000556413 SMG8Q8ND04 991 aaKnown RBP7.74□□□□□ -1.17
SCFD1-219ENST00000556413 SUGCTQ9HAC7 445 aa7.74□□□□□ -1.17
SCFD1-219ENST00000556413 WDR64B1ANS9 1081 aa7.73□□□□□ -1.17
SCFD1-219ENST00000556413 POLR3DP05423 398 aaPredicted RBP7.73□□□□□ -1.17
SCFD1-219ENST00000556413 IRAK1P51617 712 aa7.73□□□□□ -1.17
SCFD1-219ENST00000556413 MFSD14AQ96MC6 490 aa7.73□□□□□ -1.17
SCFD1-219ENST00000556413 CYP4F12Q9HCS2 524 aa7.73□□□□□ -1.17
SCFD1-219ENST00000556413 EXOSC6Q5RKV6 272 aaKnown RBP7.72□□□□□ -1.17
SCFD1-219ENST00000556413 LCE3BQ5TA77 95 aa7.72□□□□□ -1.17
SCFD1-219ENST00000556413 DRD2P14416 443 aa7.71□□□□□ -1.18
SCFD1-219ENST00000556413 HOXA10P31260 410 aaPredicted RBP7.71□□□□□ -1.18
SCFD1-219ENST00000556413 GSTM4Q03013 218 aa7.71□□□□□ -1.18
SCFD1-219ENST00000556413 RXRBP28702 533 aa7.7□□□□□ -1.18
SCFD1-219ENST00000556413 KRTAP19-1Q8IUB9 90 aa7.7□□□□□ -1.18
SCFD1-219ENST00000556413 NRSN2Q9GZP1 204 aa7.7□□□□□ -1.18
SCFD1-219ENST00000556413 A0A096LPE4 126 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 FAM95CA0A1B0GW59 222 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 A0A1W2PP55 124 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 A0A1W2PPZ6 126 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 WNT11O96014 354 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 F13BP05160 661 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 TAL1P17542 331 aaPredicted RBP7.69□□□□□ -1.18
SCFD1-219ENST00000556413 ZNF423Q2M1K9 1284 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 CDPF1Q6NVV7 123 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 CCNJLQ8IV13 435 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 GALNT12Q8IXK2 581 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 SHISA5Q8N114 240 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 FBXL6Q8N531 539 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 TCF12Q99081 682 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 PIM2Q9P1W9 311 aa7.69□□□□□ -1.18
SCFD1-219ENST00000556413 PAX4O43316 350 aa7.68□□□□□ -1.18
SCFD1-219ENST00000556413 ICMTO60725 284 aa7.68□□□□□ -1.18
SCFD1-219ENST00000556413 GRIA4P48058 902 aa7.68□□□□□ -1.18
SCFD1-219ENST00000556413 USP11P51784 963 aa7.68□□□□□ -1.18
SCFD1-219ENST00000556413 PCDH1Q08174 1060 aa7.68□□□□□ -1.18
SCFD1-219ENST00000556413 NFKBIBQ15653 356 aa7.68□□□□□ -1.18
SCFD1-219ENST00000556413 C2CD4AQ8NCU7 369 aaPredicted RBP7.68□□□□□ -1.18
SCFD1-219ENST00000556413 GIMAP7Q8NHV1 300 aa7.68□□□□□ -1.18
SCFD1-219ENST00000556413 FBLIM1Q8WUP2 373 aa7.68□□□□□ -1.18
SCFD1-219ENST00000556413 CLEC4MQ9H2X3 399 aaPredicted RBP7.68□□□□□ -1.18
SCFD1-219ENST00000556413 GOLGA2P5Q9HBQ8 144 aa7.68□□□□□ -1.18
SCFD1-219ENST00000556413 ATG3Q9NT62 314 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms