RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 RXRBP28702 533 aa7.84□□□□□ -1.15
SCFD1-218ENST00000556256 C19orf57Q0VDD7 668 aa7.84□□□□□ -1.15
SCFD1-218ENST00000556256 NUTM2GQ5VZR2 741 aa7.84□□□□□ -1.15
SCFD1-218ENST00000556256 OGFOD2Q6N063 350 aa7.84□□□□□ -1.15
SCFD1-218ENST00000556256 CBLL1Q75N03 491 aa7.84□□□□□ -1.15
SCFD1-218ENST00000556256 ZNF438Q7Z4V0 828 aa7.84□□□□□ -1.15
SCFD1-218ENST00000556256 C1orf127Q8N9H9 656 aa7.84□□□□□ -1.15
SCFD1-218ENST00000556256 OSBPL1AQ9BXW6 950 aa7.84□□□□□ -1.15
SCFD1-218ENST00000556256 CES1P23141 567 aa7.83□□□□□ -1.16
SCFD1-218ENST00000556256 ARL4DP49703 201 aa7.83□□□□□ -1.16
SCFD1-218ENST00000556256 NFXL1Q6ZNB6 911 aa7.83□□□□□ -1.16
SCFD1-218ENST00000556256 ABTB2Q8N961 1025 aa7.83□□□□□ -1.16
SCFD1-218ENST00000556256 TMPRSS13Q9BYE2 586 aa7.83□□□□□ -1.16
SCFD1-218ENST00000556256 SOX13Q9UN79 622 aa7.83□□□□□ -1.16
SCFD1-218ENST00000556256 SOX1O00570 391 aaPredicted RBP7.82□□□□□ -1.16
SCFD1-218ENST00000556256 PRNPP04156 253 aa7.82□□□□□ -1.16
SCFD1-218ENST00000556256 JAG1P78504 1218 aa7.82□□□□□ -1.16
SCFD1-218ENST00000556256 XKR5Q6UX68 686 aa7.82□□□□□ -1.16
SCFD1-218ENST00000556256 ATCAYQ86WG3 371 aa7.82□□□□□ -1.16
SCFD1-218ENST00000556256 SMG8Q8ND04 991 aaKnown RBP7.82□□□□□ -1.16
SCFD1-218ENST00000556256 FAM95CA0A1B0GW59 222 aa7.81□□□□□ -1.16
SCFD1-218ENST00000556256 TIAF1O95411 115 aa7.81□□□□□ -1.16
SCFD1-218ENST00000556256 NFKBIBQ15653 356 aa7.81□□□□□ -1.16
SCFD1-218ENST00000556256 CPSF6Q16630 551 aaKnown RBP eCLIP7.81□□□□□ -1.16
SCFD1-218ENST00000556256 FBXL18Q96ME1 805 aa7.81□□□□□ -1.16
SCFD1-218ENST00000556256 SUGCTQ9HAC7 445 aa7.81□□□□□ -1.16
SCFD1-218ENST00000556256 DLGAP3O95886 979 aa7.8□□□□□ -1.16
SCFD1-218ENST00000556256 DRD2P14416 443 aa7.8□□□□□ -1.16
SCFD1-218ENST00000556256 SRPK2P78362 688 aaKnown RBP7.8□□□□□ -1.16
SCFD1-218ENST00000556256 COL19A1Q14993 1142 aa7.8□□□□□ -1.16
SCFD1-218ENST00000556256 VN1R5Q7Z5H4 357 aa7.8□□□□□ -1.16
SCFD1-218ENST00000556256 NXPE3Q969Y0 559 aa7.8□□□□□ -1.16
SCFD1-218ENST00000556256 ASIC4Q96FT7 647 aa7.8□□□□□ -1.16
SCFD1-218ENST00000556256 CYP4F12Q9HCS2 524 aa7.8□□□□□ -1.16
SCFD1-218ENST00000556256 LOC100289279A0A1B0GTE1 492 aa7.79□□□□□ -1.16
SCFD1-218ENST00000556256 RPLP1P05386 114 aaKnown RBP7.79□□□□□ -1.16
SCFD1-218ENST00000556256 IKBKEQ14164 716 aa7.79□□□□□ -1.16
SCFD1-218ENST00000556256 CDPF1Q6NVV7 123 aa7.79□□□□□ -1.16
SCFD1-218ENST00000556256 TP53INP2Q8IXH6 220 aa7.79□□□□□ -1.16
SCFD1-218ENST00000556256 POU5F2Q8N7G0 328 aa7.79□□□□□ -1.16
SCFD1-218ENST00000556256 TMEM102Q8N9M5 508 aaPredicted RBP7.79□□□□□ -1.16
SCFD1-218ENST00000556256 FBLIM1Q8WUP2 373 aa7.79□□□□□ -1.16
SCFD1-218ENST00000556256 BSNDQ8WZ55 320 aa7.79□□□□□ -1.16
SCFD1-218ENST00000556256 USP26Q9BXU7 913 aa7.79□□□□□ -1.16
SCFD1-218ENST00000556256 GGNBP2Q9H3C7 697 aa7.79□□□□□ -1.16
SCFD1-218ENST00000556256 CYP26A1O43174 497 aa7.78□□□□□ -1.16
SCFD1-218ENST00000556256 C8AP07357 584 aa7.78□□□□□ -1.16
SCFD1-218ENST00000556256 ITGB5P18084 799 aa7.78□□□□□ -1.16
SCFD1-218ENST00000556256 ADMP35318 185 aa7.78□□□□□ -1.16
SCFD1-218ENST00000556256 USP11P51784 963 aa7.78□□□□□ -1.16
SCFD1-218ENST00000556256 TMEM164Q5U3C3 297 aa7.78□□□□□ -1.16
SCFD1-218ENST00000556256 PAOXQ6QHF9 649 aa7.78□□□□□ -1.16
SCFD1-218ENST00000556256 VSIG10LQ86VR7 867 aa7.78□□□□□ -1.16
SCFD1-218ENST00000556256 METTL22Q9BUU2 404 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-218ENST00000556256 CHRDQ9H2X0 955 aa7.78□□□□□ -1.16
SCFD1-218ENST00000556256 SEPT3Q9UH03 358 aa7.78□□□□□ -1.16
SCFD1-218ENST00000556256 EXOSC6Q5RKV6 272 aaKnown RBP7.77□□□□□ -1.17
SCFD1-218ENST00000556256 EDEM1Q92611 657 aa7.77□□□□□ -1.17
SCFD1-218ENST00000556256 CLP1Q92989 425 aaKnown RBP7.77□□□□□ -1.17
SCFD1-218ENST00000556256 PMEPA1Q969W9 287 aa7.77□□□□□ -1.17
SCFD1-218ENST00000556256 OSMRQ99650 979 aa7.77□□□□□ -1.17
SCFD1-218ENST00000556256 BSDC1Q9NW68 430 aaPredicted RBP7.77□□□□□ -1.17
SCFD1-218ENST00000556256 A6NHS1 94 aa7.76□□□□□ -1.17
SCFD1-218ENST00000556256 DNM1Q05193 864 aaKnown RBP7.76□□□□□ -1.17
SCFD1-218ENST00000556256 C2CD4AQ8NCU7 369 aaPredicted RBP7.76□□□□□ -1.17
SCFD1-218ENST00000556256 TBC1D32Q96NH3 1257 aa7.76□□□□□ -1.17
SCFD1-218ENST00000556256 ZKSCAN3Q9BRR0 538 aa7.76□□□□□ -1.17
SCFD1-218ENST00000556256 SLAIN2Q9P270 581 aa7.76□□□□□ -1.17
SCFD1-218ENST00000556256 ATG7O95352 703 aa7.75□□□□□ -1.17
SCFD1-218ENST00000556256 JUNBP17275 347 aaPredicted RBP7.75□□□□□ -1.17
SCFD1-218ENST00000556256 C8orf34Q49A92 452 aa7.75□□□□□ -1.17
SCFD1-218ENST00000556256 ZAR1Q86SH2 424 aa7.75□□□□□ -1.17
SCFD1-218ENST00000556256 PRKAG2Q9UGJ0 569 aa7.75□□□□□ -1.17
SCFD1-218ENST00000556256 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.74□□□□□ -1.17
SCFD1-218ENST00000556256 FAM170BA6NMN3 283 aa7.74□□□□□ -1.17
SCFD1-218ENST00000556256 PDGFAP04085 211 aa7.74□□□□□ -1.17
SCFD1-218ENST00000556256 PCSK2P16519 638 aa7.74□□□□□ -1.17
SCFD1-218ENST00000556256 SOX4Q06945 474 aaPredicted RBP7.74□□□□□ -1.17
SCFD1-218ENST00000556256 EZH1Q92800 747 aaPredicted RBP7.74□□□□□ -1.17
SCFD1-218ENST00000556256 GATA6Q92908 595 aa7.74□□□□□ -1.17
SCFD1-218ENST00000556256 KRTAP4-9Q9BYQ8 210 aa7.74□□□□□ -1.17
SCFD1-218ENST00000556256 SOX17Q9H6I2 414 aaPredicted RBP7.74□□□□□ -1.17
SCFD1-218ENST00000556256 PAK6Q9NQU5 681 aaPredicted RBP7.73□□□□□ -1.17
SCFD1-218ENST00000556256 EREGO14944 169 aa7.72□□□□□ -1.17
SCFD1-218ENST00000556256 ESRRAP11474 423 aaPredicted RBP7.72□□□□□ -1.17
SCFD1-218ENST00000556256 AGBL5Q8NDL9 886 aa7.72□□□□□ -1.17
SCFD1-218ENST00000556256 TTC16Q8NEE8 873 aa7.72□□□□□ -1.17
SCFD1-218ENST00000556256 FLCNQ8NFG4 579 aa7.72□□□□□ -1.17
SCFD1-218ENST00000556256 MZF1P28698 734 aaPredicted RBP7.71□□□□□ -1.18
SCFD1-218ENST00000556256 GSTM4Q03013 218 aa7.71□□□□□ -1.18
SCFD1-218ENST00000556256 NOM1Q5C9Z4 860 aaKnown RBP7.71□□□□□ -1.18
SCFD1-218ENST00000556256 ASAP3Q8TDY4 903 aa7.71□□□□□ -1.18
SCFD1-218ENST00000556256 ZC3H7BQ9UGR2 993 aaKnown RBP7.71□□□□□ -1.18
SCFD1-218ENST00000556256 ATP2B4P23634 1241 aa7.7□□□□□ -1.18
SCFD1-218ENST00000556256 TMEM132AQ24JP5 1023 aa7.7□□□□□ -1.18
SCFD1-218ENST00000556256 DUSP27Q5VZP5 1158 aa7.7□□□□□ -1.18
SCFD1-218ENST00000556256 HELQQ8TDG4 1101 aa7.7□□□□□ -1.18
SCFD1-218ENST00000556256 YIPF2Q9BWQ6 316 aa7.7□□□□□ -1.18
SCFD1-218ENST00000556256 BHLHE41Q9C0J9 482 aaPredicted RBP7.7□□□□□ -1.18
SCFD1-218ENST00000556256 LRRC4CQ9HCJ2 640 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms