RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 PTPRAP18433 802 aa9.32□□□□□ -0.92
LINC00643-204ENST00000555934 RASSF7Q02833 373 aa9.32□□□□□ -0.92
LINC00643-204ENST00000555934 TMEM151AQ8N4L1 468 aa9.32□□□□□ -0.92
LINC00643-204ENST00000555934 FRRS1LQ9P0K9 344 aa9.32□□□□□ -0.92
LINC00643-204ENST00000555934 ADAMTS8Q9UP79 889 aa9.32□□□□□ -0.92
LINC00643-204ENST00000555934 M0R082 166 aa9.31□□□□□ -0.92
LINC00643-204ENST00000555934 ERCC5P28715 1186 aaPredicted RBP9.31□□□□□ -0.92
LINC00643-204ENST00000555934 KANK3Q6NY19 840 aa9.31□□□□□ -0.92
LINC00643-204ENST00000555934 TXNDC11Q6PKC3 985 aa9.31□□□□□ -0.92
LINC00643-204ENST00000555934 NT5DC4Q86YG4 428 aa9.31□□□□□ -0.92
LINC00643-204ENST00000555934 ZNF417Q8TAU3 575 aa9.31□□□□□ -0.92
LINC00643-204ENST00000555934 BSNDQ8WZ55 320 aa9.31□□□□□ -0.92
LINC00643-204ENST00000555934 ZNF587Q96SQ5 575 aaPredicted RBP9.31□□□□□ -0.92
LINC00643-204ENST00000555934 TRIM56Q9BRZ2 755 aaKnown RBP9.31□□□□□ -0.92
LINC00643-204ENST00000555934 ZNF576Q9H609 170 aa9.31□□□□□ -0.92
LINC00643-204ENST00000555934 FAM177BA6PVY3 158 aa9.3□□□□□ -0.92
LINC00643-204ENST00000555934 XRCC5P13010 732 aaKnown RBP9.3□□□□□ -0.92
LINC00643-204ENST00000555934 ITPKAP23677 461 aa9.3□□□□□ -0.92
LINC00643-204ENST00000555934 FAAP100Q0VG06 881 aa9.3□□□□□ -0.92
LINC00643-204ENST00000555934 CCDC85BQ15834 202 aaPredicted RBP9.3□□□□□ -0.92
LINC00643-204ENST00000555934 MAP3K11Q16584 847 aa9.3□□□□□ -0.92
LINC00643-204ENST00000555934 METTL16Q86W50 562 aaKnown RBP9.3□□□□□ -0.92
LINC00643-204ENST00000555934 GPN3Q9UHW5 284 aaPredicted RBP9.3□□□□□ -0.92
LINC00643-204ENST00000555934 GGT7Q9UJ14 662 aa9.3□□□□□ -0.92
LINC00643-204ENST00000555934 GDF11O95390 407 aa9.29□□□□□ -0.92
LINC00643-204ENST00000555934 HOXB4P17483 251 aaPredicted RBP9.29□□□□□ -0.92
LINC00643-204ENST00000555934 EPHA1P21709 976 aa9.29□□□□□ -0.92
LINC00643-204ENST00000555934 CDC27P30260 824 aa9.29□□□□□ -0.92
LINC00643-204ENST00000555934 C20orf204Q6ZNR8 217 aa9.29□□□□□ -0.92
LINC00643-204ENST00000555934 IL22RA1Q8N6P7 574 aa9.29□□□□□ -0.92
LINC00643-204ENST00000555934 METTL5Q9NRN9 209 aaKnown RBP9.29□□□□□ -0.92
LINC00643-204ENST00000555934 SOX13Q9UN79 622 aa9.29□□□□□ -0.92
LINC00643-204ENST00000555934 PCDHGB7Q9Y5F8 929 aa9.29□□□□□ -0.92
LINC00643-204ENST00000555934 RNF225M0QZC1 329 aaPredicted RBP9.28□□□□□ -0.92
LINC00643-204ENST00000555934 LILRB5O75023 590 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 CELA3AP09093 270 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 DGKGP49619 791 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 ST13P50502 369 aaKnown RBP9.28□□□□□ -0.92
LINC00643-204ENST00000555934 AFF1P51825 1210 aaKnown RBP9.28□□□□□ -0.92
LINC00643-204ENST00000555934 PCDH1Q08174 1060 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 GRIK5Q16478 980 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 ZNF394Q53GI3 561 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 HS2ST1Q7LGA3 356 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 VN1R5Q7Z5H4 357 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 ADAM19Q9H013 955 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 RRAGCQ9HB90 399 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 COPRSQ9NQ92 184 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 SEC31BQ9NQW1 1179 aa9.28□□□□□ -0.92
LINC00643-204ENST00000555934 CLEC4MQ9H2X3 399 aaPredicted RBP9.27□□□□□ -0.93
LINC00643-204ENST00000555934 PPM1HQ9ULR3 514 aa9.27□□□□□ -0.93
LINC00643-204ENST00000555934 LINC01387J3KSC0 135 aa9.26□□□□□ -0.93
LINC00643-204ENST00000555934 PTPN12Q05209 780 aaKnown RBP9.26□□□□□ -0.93
LINC00643-204ENST00000555934 ZNF423Q2M1K9 1284 aa9.26□□□□□ -0.93
LINC00643-204ENST00000555934 HGSNATQ68CP4 663 aa9.26□□□□□ -0.93
LINC00643-204ENST00000555934 SLC7A3Q8WY07 619 aa9.26□□□□□ -0.93
LINC00643-204ENST00000555934 TTC9Q92623 222 aa9.26□□□□□ -0.93
LINC00643-204ENST00000555934 BAG6P46379 1132 aa9.25□□□□□ -0.93
LINC00643-204ENST00000555934 CABP4P57796 275 aa9.25□□□□□ -0.93
LINC00643-204ENST00000555934 SNRPNP63162 240 aaKnown RBP9.25□□□□□ -0.93
LINC00643-204ENST00000555934 RAD51AP2Q09MP3 1159 aa9.25□□□□□ -0.93
LINC00643-204ENST00000555934 IKBKEQ14164 716 aa9.25□□□□□ -0.93
LINC00643-204ENST00000555934 USP48Q86UV5 1035 aa9.25□□□□□ -0.93
LINC00643-204ENST00000555934 ZFYVE1Q9HBF4 777 aa9.25□□□□□ -0.93
LINC00643-204ENST00000555934 PRDM6Q9NQX0 595 aa9.25□□□□□ -0.93
LINC00643-204ENST00000555934 ENC1O14682 589 aa9.24□□□□□ -0.93
LINC00643-204ENST00000555934 PAGE1O75459 146 aa9.24□□□□□ -0.93
LINC00643-204ENST00000555934 ESRRAP11474 423 aaPredicted RBP9.24□□□□□ -0.93
LINC00643-204ENST00000555934 WFDC8Q8IUA0 241 aa9.24□□□□□ -0.93
LINC00643-204ENST00000555934 NECAB3Q96P71 396 aaPredicted RBP9.24□□□□□ -0.93
LINC00643-204ENST00000555934 CEP44Q9C0F1 390 aa9.24□□□□□ -0.93
LINC00643-204ENST00000555934 KBTBD4Q9NVX7 518 aa9.24□□□□□ -0.93
LINC00643-204ENST00000555934 MINDY4BA8MYZ0 360 aa9.23□□□□□ -0.93
LINC00643-204ENST00000555934 SOX1O00570 391 aaPredicted RBP9.23□□□□□ -0.93
LINC00643-204ENST00000555934 RPS26P11Q5JNZ5 115 aaPredicted RBP9.23□□□□□ -0.93
LINC00643-204ENST00000555934 SV2BQ7L1I2 683 aa9.23□□□□□ -0.93
LINC00643-204ENST00000555934 PODNQ7Z5L7 613 aa9.23□□□□□ -0.93
LINC00643-204ENST00000555934 DMRTC2Q8IXT2 367 aaPredicted RBP9.23□□□□□ -0.93
LINC00643-204ENST00000555934 CARD10Q9BWT7 1032 aa9.23□□□□□ -0.93
LINC00643-204ENST00000555934 ACBD3Q9H3P7 528 aa9.23□□□□□ -0.93
LINC00643-204ENST00000555934 TMEM39AQ9NV64 488 aa9.23□□□□□ -0.93
LINC00643-204ENST00000555934 PPME1Q9Y570 386 aa9.23□□□□□ -0.93
LINC00643-204ENST00000555934 H3BRJ5 948 aa9.22□□□□□ -0.93
LINC00643-204ENST00000555934 GBP2P32456 591 aaPredicted RBP9.22□□□□□ -0.93
LINC00643-204ENST00000555934 RACK1P63244 317 aaKnown RBP9.22□□□□□ -0.93
LINC00643-204ENST00000555934 MSL1Q68DK7 614 aa9.22□□□□□ -0.93
LINC00643-204ENST00000555934 LINC00114Q6XXX2 140 aa9.22□□□□□ -0.93
LINC00643-204ENST00000555934 NOC4LQ9BVI4 516 aaKnown RBP9.22□□□□□ -0.93
LINC00643-204ENST00000555934 CCSER2Q9H7U1 834 aa9.22□□□□□ -0.93
LINC00643-204ENST00000555934 MKL2Q9ULH7 1088 aa9.22□□□□□ -0.93
LINC00643-204ENST00000555934 TLR6Q9Y2C9 796 aa9.22□□□□□ -0.93
LINC00643-204ENST00000555934 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.22□□□□□ -0.93
LINC00643-204ENST00000555934 B3GALT4O96024 378 aa9.21□□□□□ -0.94
LINC00643-204ENST00000555934 TNNI2P48788 182 aa9.21□□□□□ -0.94
LINC00643-204ENST00000555934 GSTM4Q03013 218 aa9.21□□□□□ -0.94
LINC00643-204ENST00000555934 PPP2R3AQ06190 1150 aa9.21□□□□□ -0.94
LINC00643-204ENST00000555934 COL9A3Q14050 684 aaPredicted RBP9.21□□□□□ -0.94
LINC00643-204ENST00000555934 ERMP1Q7Z2K6 904 aa9.21□□□□□ -0.94
LINC00643-204ENST00000555934 RELL1Q8IUW5 271 aa9.21□□□□□ -0.94
LINC00643-204ENST00000555934 DDX41Q9UJV9 622 aaKnown RBP9.21□□□□□ -0.94
LINC00643-204ENST00000555934 GNB5O14775 395 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms