RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 GTF2IP78347 998 aa13.35□□□□□ -0.27
SHMT2-218ENST00000555213 CCDC102BQ68D86 513 aa13.35□□□□□ -0.27
SHMT2-218ENST00000555213 TTLL5Q6EMB2 1281 aa13.35□□□□□ -0.27
SHMT2-218ENST00000555213 TDRD7Q8NHU6 1098 aaKnown RBP13.35□□□□□ -0.27
SHMT2-218ENST00000555213 LNPKQ9C0E8 428 aa13.35□□□□□ -0.27
SHMT2-218ENST00000555213 BCL11AQ9H165 835 aa13.35□□□□□ -0.27
SHMT2-218ENST00000555213 VIL1P09327 827 aaKnown RBP13.34□□□□□ -0.27
SHMT2-218ENST00000555213 UQCRFS1P1P0C7P4 283 aa13.34□□□□□ -0.27
SHMT2-218ENST00000555213 PHKA1P46020 1223 aa13.34□□□□□ -0.27
SHMT2-218ENST00000555213 GMPSP49915 693 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-218ENST00000555213 CHAF1AQ13111 956 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-218ENST00000555213 TTC39AQ5SRH9 613 aa13.34□□□□□ -0.27
SHMT2-218ENST00000555213 RSBN1LQ6PCB5 846 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-218ENST00000555213 AGBL3Q8NEM8 1001 aa13.34□□□□□ -0.27
SHMT2-218ENST00000555213 TBC1D22AQ8WUA7 517 aa13.34□□□□□ -0.27
SHMT2-218ENST00000555213 EAF2Q96CJ1 260 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-218ENST00000555213 GPATCH3Q96I76 525 aa13.34□□□□□ -0.27
SHMT2-218ENST00000555213 DBNDD2Q9BQY9 259 aa13.34□□□□□ -0.27
SHMT2-218ENST00000555213 DENND2AQ9ULE3 1009 aa13.34□□□□□ -0.27
SHMT2-218ENST00000555213 IQSEC3Q9UPP2 1182 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-218ENST00000555213 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-218ENST00000555213 FAM205AQ6ZU69 1335 aa13.34□□□□□ -0.27
SHMT2-218ENST00000555213 WDR90Q96KV7 1748 aa13.33□□□□□ -0.27
SHMT2-218ENST00000555213 FKBP1AP62942 108 aaKnown RBP13.33□□□□□ -0.28
SHMT2-218ENST00000555213 MFSD14BQ5SR56 506 aa13.33□□□□□ -0.28
SHMT2-218ENST00000555213 DACT2Q5SW24 774 aa13.33□□□□□ -0.28
SHMT2-218ENST00000555213 OGFOD1Q8N543 542 aa13.33□□□□□ -0.28
SHMT2-218ENST00000555213 WDR66Q8TBY9 1149 aa13.33□□□□□ -0.28
SHMT2-218ENST00000555213 OTUD7AQ8TE49 926 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-218ENST00000555213 CCDC8Q9H0W5 538 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-218ENST00000555213 KCNQ5Q9NR82 932 aa13.33□□□□□ -0.28
SHMT2-218ENST00000555213 HACL1Q9UJ83 578 aa13.33□□□□□ -0.28
SHMT2-218ENST00000555213 DBNLQ9UJU6 430 aaKnown RBP13.33□□□□□ -0.28
SHMT2-218ENST00000555213 PDS5AQ29RF7 1337 aaKnown RBP13.33□□□□□ -0.28
SHMT2-218ENST00000555213 ZBTB22O15209 634 aa13.32□□□□□ -0.28
SHMT2-218ENST00000555213 VEGFAP15692 232 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-218ENST00000555213 ARID4AP29374 1257 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-218ENST00000555213 PLEKHM2Q8IWE5 1019 aa13.32□□□□□ -0.28
SHMT2-218ENST00000555213 ZGPATQ8N5A5 531 aaKnown RBP13.32□□□□□ -0.28
SHMT2-218ENST00000555213 DPF2Q92785 391 aa13.32□□□□□ -0.28
SHMT2-218ENST00000555213 TSHZ2Q9NRE2 1034 aa13.32□□□□□ -0.28
SHMT2-218ENST00000555213 GPRC5DQ9NZD1 345 aa13.32□□□□□ -0.28
SHMT2-218ENST00000555213 HDAC9Q9UKV0 1011 aa13.32□□□□□ -0.28
SHMT2-218ENST00000555213 JAG2Q9Y219 1238 aa13.32□□□□□ -0.28
SHMT2-218ENST00000555213 SALL3Q9BXA9 1300 aa13.32□□□□□ -0.28
SHMT2-218ENST00000555213 PSME4Q14997 1843 aa13.32□□□□□ -0.28
SHMT2-218ENST00000555213 SCN9AQ15858 1988 aa13.31□□□□□ -0.28
SHMT2-218ENST00000555213 H7C1D1 291 aa13.31□□□□□ -0.28
SHMT2-218ENST00000555213 USP17L8P0C7I0 530 aa13.31□□□□□ -0.28
SHMT2-218ENST00000555213 MMP14P50281 582 aa13.31□□□□□ -0.28
SHMT2-218ENST00000555213 SCNN1DP51172 638 aa13.31□□□□□ -0.28
SHMT2-218ENST00000555213 RASGRF1Q13972 1273 aa13.31□□□□□ -0.28
SHMT2-218ENST00000555213 MICALL2Q8IY33 904 aa13.31□□□□□ -0.28
SHMT2-218ENST00000555213 ZNF512BQ96KM6 892 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-218ENST00000555213 NMRK2Q9NPI5 230 aa13.31□□□□□ -0.28
SHMT2-218ENST00000555213 TLR7Q9NYK1 1049 aaKnown RBP13.31□□□□□ -0.28
SHMT2-218ENST00000555213 ZBTB12Q9Y330 459 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-218ENST00000555213 MAST3O60307 1309 aa13.31□□□□□ -0.28
SHMT2-218ENST00000555213 EPHX2P34913 555 aa13.3□□□□□ -0.28
SHMT2-218ENST00000555213 PNMA8AQ86V59 439 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-218ENST00000555213 SPATA5Q8NB90 893 aa13.3□□□□□ -0.28
SHMT2-218ENST00000555213 RRAGCQ9HB90 399 aa13.3□□□□□ -0.28
SHMT2-218ENST00000555213 ADARB2Q9NS39 739 aaKnown RBP13.3□□□□□ -0.28
SHMT2-218ENST00000555213 SUGT1Q9Y2Z0 365 aa13.3□□□□□ -0.28
SHMT2-218ENST00000555213 SCN4AP35499 1836 aa13.29□□□□□ -0.28
SHMT2-218ENST00000555213 COL1A1P02452 1464 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-218ENST00000555213 SPTY2D1Q68D10 685 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-218ENST00000555213 KIAA0825Q8IV33 1275 aa13.29□□□□□ -0.28
SHMT2-218ENST00000555213 CNOT7Q9UIV1 285 aaKnown RBP13.29□□□□□ -0.28
SHMT2-218ENST00000555213 SALL1Q9NSC2 1324 aa13.29□□□□□ -0.28
SHMT2-218ENST00000555213 MYH13Q9UKX3 1938 aa13.29□□□□□ -0.28
SHMT2-218ENST00000555213 MCAMP43121 646 aa13.28□□□□□ -0.28
SHMT2-218ENST00000555213 ZNF280AP59817 542 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-218ENST00000555213 C8orf34Q49A92 452 aa13.28□□□□□ -0.28
SHMT2-218ENST00000555213 USP50Q70EL3 339 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-218ENST00000555213 CERS5Q8N5B7 392 aa13.28□□□□□ -0.28
SHMT2-218ENST00000555213 GMLQ99445 158 aa13.28□□□□□ -0.28
SHMT2-218ENST00000555213 MXD3Q9BW11 206 aa13.28□□□□□ -0.28
SHMT2-218ENST00000555213 BACH2Q9BYV9 841 aa13.28□□□□□ -0.28
SHMT2-218ENST00000555213 TAF1DQ9H5J8 278 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-218ENST00000555213 ECHDC1Q9NTX5 307 aa13.28□□□□□ -0.28
SHMT2-218ENST00000555213 HMG20BQ9P0W2 317 aa13.28□□□□□ -0.28
SHMT2-218ENST00000555213 F8W031 263 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-218ENST00000555213 ERC2O15083 957 aa13.27□□□□□ -0.29
SHMT2-218ENST00000555213 LDHBP07195 334 aaKnown RBP13.27□□□□□ -0.29
SHMT2-218ENST00000555213 EPS15P42566 896 aa13.27□□□□□ -0.29
SHMT2-218ENST00000555213 KIF4BQ2VIQ3 1234 aa13.27□□□□□ -0.29
SHMT2-218ENST00000555213 EAPPQ56P03 285 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-218ENST00000555213 DZIP1Q86YF9 867 aaKnown RBP13.27□□□□□ -0.29
SHMT2-218ENST00000555213 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.27□□□□□ -0.29
SHMT2-218ENST00000555213 OSBPL3Q9H4L5 887 aa13.27□□□□□ -0.29
SHMT2-218ENST00000555213 ABCF2Q9UG63 623 aa13.27□□□□□ -0.29
SHMT2-218ENST00000555213 STAP2Q9UGK3 403 aa13.27□□□□□ -0.29
SHMT2-218ENST00000555213 TTF2Q9UNY4 1162 aaKnown RBP13.27□□□□□ -0.29
SHMT2-218ENST00000555213 TTC41PQ6P2S7 1318 aa13.27□□□□□ -0.29
SHMT2-218ENST00000555213 ZNF646O15015 1829 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-218ENST00000555213 IGSF3O75054 1194 aa13.26□□□□□ -0.29
SHMT2-218ENST00000555213 ATP5JP18859 108 aa13.26□□□□□ -0.29
SHMT2-218ENST00000555213 MX1P20591 662 aa13.26□□□□□ -0.29
SHMT2-218ENST00000555213 SCARF1Q14162 830 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms