RNA–Protein interactions for RNA: ENST00000554270.5

PTPN21-205, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

TSL 1 (best)

Gene PTPN21, Length 4,008 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-205ENST00000554270 ANKARQ7Z5J8 1434 aa13.28□□□□□ -0.28
PTPN21-205ENST00000554270 HMGB1P09429 215 aaKnown RBP13.28□□□□□ -0.28
PTPN21-205ENST00000554270 SKIDA1Q1XH10 827 aa13.28□□□□□ -0.28
PTPN21-205ENST00000554270 FUCA2Q9BTY2 467 aa13.28□□□□□ -0.28
PTPN21-205ENST00000554270 ABCF2Q9UG63 623 aa13.28□□□□□ -0.28
PTPN21-205ENST00000554270 USP42Q9H9J4 1324 aaKnown RBP13.27□□□□□ -0.28
PTPN21-205ENST00000554270 SPTLC2O15270 562 aa13.27□□□□□ -0.28
PTPN21-205ENST00000554270 FGAP02671 866 aa13.27□□□□□ -0.28
PTPN21-205ENST00000554270 PDIA3P30101 505 aaKnown RBP13.27□□□□□ -0.28
PTPN21-205ENST00000554270 NDUFA8P51970 172 aa13.27□□□□□ -0.28
PTPN21-205ENST00000554270 OLFM4Q6UX06 510 aa13.27□□□□□ -0.28
PTPN21-205ENST00000554270 PCDHA7Q9UN72 937 aa13.27□□□□□ -0.28
PTPN21-205ENST00000554270 SMTNL1A8MU46 457 aa13.27□□□□□ -0.29
PTPN21-205ENST00000554270 DHX16O60231 1041 aaKnown RBP13.27□□□□□ -0.29
PTPN21-205ENST00000554270 FAM160A1Q05DH4 1040 aa13.27□□□□□ -0.29
PTPN21-205ENST00000554270 DPCR1Q3MIW9 517 aa13.27□□□□□ -0.29
PTPN21-205ENST00000554270 LRRC8AQ8IWT6 810 aa13.27□□□□□ -0.29
PTPN21-205ENST00000554270 SMAP1Q8IYB5 467 aaPredicted RBP13.27□□□□□ -0.29
PTPN21-205ENST00000554270 PUS7LQ9H0K6 701 aaKnown RBP13.27□□□□□ -0.29
PTPN21-205ENST00000554270 ASAP1Q9ULH1 1129 aa13.27□□□□□ -0.29
PTPN21-205ENST00000554270 B4E1Z4 1266 aa13.27□□□□□ -0.29
PTPN21-205ENST00000554270 AIDAQ96BJ3 306 aa13.27□□□□□ -0.29
PTPN21-205ENST00000554270 XPO4Q9C0E2 1151 aaKnown RBP13.27□□□□□ -0.29
PTPN21-205ENST00000554270 RFX5P48382 616 aaPredicted RBP13.26□□□□□ -0.29
PTPN21-205ENST00000554270 LRRFIP1Q32MZ4 808 aaKnown RBP13.26□□□□□ -0.29
PTPN21-205ENST00000554270 GPAA1O43292 621 aa13.26□□□□□ -0.29
PTPN21-205ENST00000554270 ZFP91Q96JP5 570 aaPredicted RBP13.26□□□□□ -0.29
PTPN21-205ENST00000554270 CTNNA3Q9UI47 895 aa13.26□□□□□ -0.29
PTPN21-205ENST00000554270 UBR1Q8IWV7 1749 aa13.26□□□□□ -0.29
PTPN21-205ENST00000554270 AKAP12Q02952 1782 aa13.26□□□□□ -0.29
PTPN21-205ENST00000554270 MINDY4BA8MYZ0 360 aa13.26□□□□□ -0.29
PTPN21-205ENST00000554270 CTAGE5O15320 804 aa13.26□□□□□ -0.29
PTPN21-205ENST00000554270 PAXIP1Q6ZW49 1069 aaPredicted RBP13.26□□□□□ -0.29
PTPN21-205ENST00000554270 ALG1Q9BT22 464 aa13.26□□□□□ -0.29
PTPN21-205ENST00000554270 COL15A1P39059 1388 aa13.26□□□□□ -0.29
PTPN21-205ENST00000554270 PIK3C2AO00443 1686 aa13.25□□□□□ -0.29
PTPN21-205ENST00000554270 RASSF8Q8NHQ8 419 aa13.25□□□□□ -0.29
PTPN21-205ENST00000554270 NCBP1Q09161 790 aaKnown RBP13.25□□□□□ -0.29
PTPN21-205ENST00000554270 MIGA1Q8NAN2 632 aa13.25□□□□□ -0.29
PTPN21-205ENST00000554270 SLC26A6Q9BXS9 759 aa13.25□□□□□ -0.29
PTPN21-205ENST00000554270 SETD1AO15047 1707 aaKnown RBP13.25□□□□□ -0.29
PTPN21-205ENST00000554270 TULP1O00294 542 aaPredicted RBP13.25□□□□□ -0.29
PTPN21-205ENST00000554270 GTF2E1P29083 439 aaPredicted RBP13.25□□□□□ -0.29
PTPN21-205ENST00000554270 SYKP43405 635 aa13.25□□□□□ -0.29
PTPN21-205ENST00000554270 ERCC6LQ2NKX8 1250 aa13.25□□□□□ -0.29
PTPN21-205ENST00000554270 ATG9AQ7Z3C6 839 aa13.25□□□□□ -0.29
PTPN21-205ENST00000554270 NCOA7Q8NI08 942 aa13.25□□□□□ -0.29
PTPN21-205ENST00000554270 UBXN4Q92575 508 aa13.25□□□□□ -0.29
PTPN21-205ENST00000554270 PAXBP1Q9Y5B6 917 aa13.25□□□□□ -0.29
PTPN21-205ENST00000554270 hCG_1642624A0A1W2PR95 340 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 PFKFB2O60825 505 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 UBASH3AP57075 661 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 BICDL1Q6ZP65 573 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 CNNM3Q8NE01 707 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 CLIC6Q96NY7 704 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 UTP14AQ9BVJ6 771 aaKnown RBP13.24□□□□□ -0.29
PTPN21-205ENST00000554270 SPTLC3Q9NUV7 552 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 TDO2P48775 406 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 METAP2P50579 478 aaKnown RBP eCLIP13.24□□□□□ -0.29
PTPN21-205ENST00000554270 FOXO4P98177 505 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 TEX35Q5T0J7 233 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 TDRD7Q8NHU6 1098 aaKnown RBP13.24□□□□□ -0.29
PTPN21-205ENST00000554270 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.24□□□□□ -0.29
PTPN21-205ENST00000554270 MED23Q9ULK4 1368 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 CTDNEP1O95476 244 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 ITGA6P23229 1130 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 MPHOSPH8Q99549 860 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 AKAP2Q9Y2D5 859 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 PXDNLA1KZ92 1463 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 TMEM94Q12767 1356 aa13.24□□□□□ -0.29
PTPN21-205ENST00000554270 IFIT3O14879 490 aaKnown RBP13.23□□□□□ -0.29
PTPN21-205ENST00000554270 ZNF202O95125 648 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 HELLSQ9NRZ9 838 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 ELP1O95163 1332 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 TOP1P11387 765 aaKnown RBP13.23□□□□□ -0.29
PTPN21-205ENST00000554270 ATP1A3P13637 1013 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 AKAP17AQ02040 695 aaKnown RBP13.23□□□□□ -0.29
PTPN21-205ENST00000554270 SAFBQ15424 915 aaKnown RBP eCLIP13.23□□□□□ -0.29
PTPN21-205ENST00000554270 ZMYM1Q5SVZ6 1142 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 GREM2Q9H772 168 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 CTDSPL2Q05D32 466 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 ZNF827Q17R98 1081 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 ACSBG1Q96GR2 724 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 NAPBQ9H115 298 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 TMEM67Q5HYA8 995 aa13.23□□□□□ -0.29
PTPN21-205ENST00000554270 UBE2Q2LH0YL09 131 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 IL2RBP14784 551 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 STX17P56962 302 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 PNOCQ13519 176 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 CADPS2Q86UW7 1296 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 GOLGA8AA7E2F4 631 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 STARD3NLO95772 234 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 ARHGAP29Q52LW3 1261 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 TRMT44Q8IYL2 757 aaKnown RBP13.22□□□□□ -0.29
PTPN21-205ENST00000554270 CCDC191Q8NCU4 936 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 LRP2BPQ9P2M1 347 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 ANKRD18BA2A2Z9 1011 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 KARSQ15046 597 aaKnown RBP13.22□□□□□ -0.29
PTPN21-205ENST00000554270 HLFQ16534 295 aa13.22□□□□□ -0.29
PTPN21-205ENST00000554270 JAG2Q9Y219 1238 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms