RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 ERC1Q8IUD2 1116 aa17.78■□□□□ 0.44
CCDC88C-207ENST00000554051 TRPM4Q8TD43 1214 aa17.78■□□□□ 0.44
CCDC88C-207ENST00000554051 MAST3O60307 1309 aa17.77■□□□□ 0.44
CCDC88C-207ENST00000554051 PITPNM2Q9BZ72 1349 aa17.77■□□□□ 0.44
CCDC88C-207ENST00000554051 RRP1P56182 461 aaKnown RBP17.77■□□□□ 0.44
CCDC88C-207ENST00000554051 OS9Q13438 667 aaPredicted RBP17.77■□□□□ 0.44
CCDC88C-207ENST00000554051 CNTROBQ8N137 903 aa17.77■□□□□ 0.44
CCDC88C-207ENST00000554051 C1orf115Q9H7X2 142 aa17.77■□□□□ 0.44
CCDC88C-207ENST00000554051 MYOZ2Q9NPC6 264 aa17.77■□□□□ 0.44
CCDC88C-207ENST00000554051 ZBTB40Q9NUA8 1239 aa17.77■□□□□ 0.44
CCDC88C-207ENST00000554051 PDS5AQ29RF7 1337 aaKnown RBP17.76■□□□□ 0.43
CCDC88C-207ENST00000554051 TBC1D10BQ4KMP7 808 aaPredicted RBP17.76■□□□□ 0.43
CCDC88C-207ENST00000554051 MFSD14BQ5SR56 506 aa17.76■□□□□ 0.43
CCDC88C-207ENST00000554051 CDC37L1Q7L3B6 337 aa17.76■□□□□ 0.43
CCDC88C-207ENST00000554051 GPR108Q9NPR9 543 aa17.76■□□□□ 0.43
CCDC88C-207ENST00000554051 NOP58Q9Y2X3 529 aaKnown RBP17.76■□□□□ 0.43
CCDC88C-207ENST00000554051 SUGT1Q9Y2Z0 365 aa17.76■□□□□ 0.43
CCDC88C-207ENST00000554051 COL1A1P02452 1464 aaPredicted RBP17.75■□□□□ 0.43
CCDC88C-207ENST00000554051 MAP1SQ66K74 1059 aaPredicted RBP17.75■□□□□ 0.43
CCDC88C-207ENST00000554051 SAMD7Q7Z3H4 446 aa17.75■□□□□ 0.43
CCDC88C-207ENST00000554051 DCPSQ96C86 337 aaKnown RBP17.75■□□□□ 0.43
CCDC88C-207ENST00000554051 CREBZFQ9NS37 354 aa17.75■□□□□ 0.43
CCDC88C-207ENST00000554051 ECM29Q5VYK3 1845 aa17.75■□□□□ 0.43
CCDC88C-207ENST00000554051 TRPM7Q96QT4 1865 aa17.74■□□□□ 0.43
CCDC88C-207ENST00000554051 A0A1B0GUL7 405 aa17.74■□□□□ 0.43
CCDC88C-207ENST00000554051 SURF6O75683 361 aaKnown RBP17.74■□□□□ 0.43
CCDC88C-207ENST00000554051 ITGBL1O95965 494 aaPredicted RBP17.74■□□□□ 0.43
CCDC88C-207ENST00000554051 KIAA0825Q8IV33 1275 aa17.74■□□□□ 0.43
CCDC88C-207ENST00000554051 WDR66Q8TBY9 1149 aa17.74■□□□□ 0.43
CCDC88C-207ENST00000554051 SHTN1A0MZ66 631 aa17.73■□□□□ 0.43
CCDC88C-207ENST00000554051 MYO1BO43795 1136 aa17.73■□□□□ 0.43
CCDC88C-207ENST00000554051 BCAMP50895 628 aa17.73■□□□□ 0.43
CCDC88C-207ENST00000554051 HIRAP54198 1017 aaPredicted RBP17.73■□□□□ 0.43
CCDC88C-207ENST00000554051 TFCP2Q12800 502 aa17.73■□□□□ 0.43
CCDC88C-207ENST00000554051 SULF1Q8IWU6 871 aa17.73■□□□□ 0.43
CCDC88C-207ENST00000554051 ZGPATQ8N5A5 531 aaKnown RBP17.73■□□□□ 0.43
CCDC88C-207ENST00000554051 MTMR14Q8NCE2 650 aa17.73■□□□□ 0.43
CCDC88C-207ENST00000554051 GGA3Q9NZ52 723 aa17.73■□□□□ 0.43
CCDC88C-207ENST00000554051 DENND2AQ9ULE3 1009 aa17.73■□□□□ 0.43
CCDC88C-207ENST00000554051 TMEM88BA6NKF7 163 aa17.72■□□□□ 0.43
CCDC88C-207ENST00000554051 CERS5Q8N5B7 392 aa17.72■□□□□ 0.43
CCDC88C-207ENST00000554051 SERPINA10Q9UK55 444 aa17.72■□□□□ 0.43
CCDC88C-207ENST00000554051 SALL1Q9NSC2 1324 aa17.72■□□□□ 0.43
CCDC88C-207ENST00000554051 HDLBPQ00341 1268 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-207ENST00000554051 CHAF1AQ13111 956 aaPredicted RBP17.71■□□□□ 0.43
CCDC88C-207ENST00000554051 AAMPQ13685 434 aa17.71■□□□□ 0.43
CCDC88C-207ENST00000554051 DLGAP5Q15398 846 aa17.71■□□□□ 0.43
CCDC88C-207ENST00000554051 GORABQ5T7V8 394 aa17.71■□□□□ 0.43
CCDC88C-207ENST00000554051 RBM26Q5T8P6 1007 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-207ENST00000554051 CCDC102BQ68D86 513 aa17.71■□□□□ 0.43
CCDC88C-207ENST00000554051 KRT26Q7Z3Y9 468 aa17.71■□□□□ 0.43
CCDC88C-207ENST00000554051 APOBEC3FQ8IUX4 373 aaKnown RBP17.71■□□□□ 0.43
CCDC88C-207ENST00000554051 MXD3Q9BW11 206 aa17.71■□□□□ 0.43
CCDC88C-207ENST00000554051 EGFRP00533 1210 aa17.7■□□□□ 0.42
CCDC88C-207ENST00000554051 UQCRFS1P1P0C7P4 283 aa17.7■□□□□ 0.42
CCDC88C-207ENST00000554051 SCARF1Q14162 830 aa17.7■□□□□ 0.42
CCDC88C-207ENST00000554051 C20orf194Q5TEA3 1177 aa17.7■□□□□ 0.42
CCDC88C-207ENST00000554051 XAGE2Q96GT9 111 aa17.7■□□□□ 0.42
CCDC88C-207ENST00000554051 WNT10BO00744 389 aa17.69■□□□□ 0.42
CCDC88C-207ENST00000554051 IGSF3O75054 1194 aa17.69■□□□□ 0.42
CCDC88C-207ENST00000554051 TNNI3KQ59H18 835 aa17.69■□□□□ 0.42
CCDC88C-207ENST00000554051 ANGEL2Q5VTE6 544 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-207ENST00000554051 NEUROD6Q96NK8 337 aa17.69■□□□□ 0.42
CCDC88C-207ENST00000554051 TTF2Q9UNY4 1162 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-207ENST00000554051 IQSEC3Q9UPP2 1182 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-207ENST00000554051 PPP2R3BQ9Y5P8 575 aa17.69■□□□□ 0.42
CCDC88C-207ENST00000554051 FPGT-TNNI3KV9GXZ4 949 aa17.69■□□□□ 0.42
CCDC88C-207ENST00000554051 RAB11FIP3O75154 756 aa17.68■□□□□ 0.42
CCDC88C-207ENST00000554051 PHKA1P46020 1223 aa17.68■□□□□ 0.42
CCDC88C-207ENST00000554051 TEKT1Q969V4 418 aa17.68■□□□□ 0.42
CCDC88C-207ENST00000554051 ZBED3Q96IU2 234 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-207ENST00000554051 MRIQ9BWK5 157 aa17.68■□□□□ 0.42
CCDC88C-207ENST00000554051 GLIS2Q9BZE0 524 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-207ENST00000554051 JAG2Q9Y219 1238 aa17.68■□□□□ 0.42
CCDC88C-207ENST00000554051 SPDYE2BA6NHP3 402 aa17.67■□□□□ 0.42
CCDC88C-207ENST00000554051 F8W031 263 aaPredicted RBP17.67■□□□□ 0.42
CCDC88C-207ENST00000554051 SPDYE6P0CI01 402 aa17.67■□□□□ 0.42
CCDC88C-207ENST00000554051 ADORA1P30542 326 aa17.67■□□□□ 0.42
CCDC88C-207ENST00000554051 TNFAIP1Q13829 316 aa17.67■□□□□ 0.42
CCDC88C-207ENST00000554051 CFAP100Q494V2 611 aa17.67■□□□□ 0.42
CCDC88C-207ENST00000554051 CCDC158Q5M9N0 1113 aa17.67■□□□□ 0.42
CCDC88C-207ENST00000554051 KIF1BPQ96EK5 621 aa17.67■□□□□ 0.42
CCDC88C-207ENST00000554051 ARID4AP29374 1257 aaPredicted RBP17.66■□□□□ 0.42
CCDC88C-207ENST00000554051 TIMM10P62072 90 aa17.66■□□□□ 0.42
CCDC88C-207ENST00000554051 RASGRF1Q13972 1273 aa17.66■□□□□ 0.42
CCDC88C-207ENST00000554051 SPTY2D1Q68D10 685 aaPredicted RBP17.66■□□□□ 0.42
CCDC88C-207ENST00000554051 ZNF512BQ96KM6 892 aaPredicted RBP17.66■□□□□ 0.42
CCDC88C-207ENST00000554051 MAST2Q6P0Q8 1798 aa17.66■□□□□ 0.42
CCDC88C-207ENST00000554051 PAPPA2Q9BXP8 1791 aa17.66■□□□□ 0.42
CCDC88C-207ENST00000554051 LDHBP07195 334 aaKnown RBP17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 NF2P35240 595 aa17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 CRKP46108 304 aa17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 RBM5P52756 815 aaKnown RBP eCLIP17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 FKBP1BP68106 108 aa17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 NBPF9Q3BBW0 867 aa17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 USP48Q86UV5 1035 aa17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 SLF2Q8IX21 1173 aa17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 CLASRPQ8N2M8 674 aaKnown RBP17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 ABT1Q9ULW3 272 aaKnown RBP17.65■□□□□ 0.42
CCDC88C-207ENST00000554051 EXOC6BQ9Y2D4 811 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms