RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 PPP1R42Q7Z4L9 355 aa17.94■□□□□ 0.46
SHMT2-208ENST00000553868 CFHR5Q9BXR6 569 aa17.94■□□□□ 0.46
SHMT2-208ENST00000553868 ATP5J2-PTCD1G3V325 749 aa17.93■□□□□ 0.46
SHMT2-208ENST00000553868 GRAPQ13588 217 aa17.93■□□□□ 0.46
SHMT2-208ENST00000553868 GRAPLQ8TC17 118 aaPredicted RBP17.93■□□□□ 0.46
SHMT2-208ENST00000553868 ISCA1Q9BUE6 129 aa17.93■□□□□ 0.46
SHMT2-208ENST00000553868 UTP14AQ9BVJ6 771 aaKnown RBP17.93■□□□□ 0.46
SHMT2-208ENST00000553868 PTPN22Q9Y2R2 807 aa17.93■□□□□ 0.46
SHMT2-208ENST00000553868 LRRFIP2Q9Y608 721 aaKnown RBP17.93■□□□□ 0.46
SHMT2-208ENST00000553868 ANKRD36CQ5JPF3 1778 aa17.92■□□□□ 0.46
SHMT2-208ENST00000553868 NBPF7P0C2Y1 421 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-208ENST00000553868 SREBF2Q12772 1141 aa17.92■□□□□ 0.46
SHMT2-208ENST00000553868 DDX46Q7L014 1031 aaKnown RBP17.92■□□□□ 0.46
SHMT2-208ENST00000553868 ARMC5Q96C12 935 aa17.92■□□□□ 0.46
SHMT2-208ENST00000553868 POLLQ9UGP5 575 aa17.92■□□□□ 0.46
SHMT2-208ENST00000553868 NSFL1CQ9UNZ2 370 aaKnown RBP17.92■□□□□ 0.46
SHMT2-208ENST00000553868 LRRC37AA6NMS7 1700 aa17.92■□□□□ 0.46
SHMT2-208ENST00000553868 C6orf229H3BNL8 230 aa17.91■□□□□ 0.46
SHMT2-208ENST00000553868 ATP8B2P98198 1209 aa17.91■□□□□ 0.46
SHMT2-208ENST00000553868 CAP1Q01518 475 aa17.91■□□□□ 0.46
SHMT2-208ENST00000553868 SMC5Q8IY18 1101 aa17.91■□□□□ 0.46
SHMT2-208ENST00000553868 CD99L2Q8TCZ2 262 aa17.91■□□□□ 0.46
SHMT2-208ENST00000553868 LAMA3Q16787 3333 aa17.91■□□□□ 0.46
SHMT2-208ENST00000553868 VIL1P09327 827 aaKnown RBP17.9■□□□□ 0.46
SHMT2-208ENST00000553868 SIRT2Q8IXJ6 389 aa17.9■□□□□ 0.46
SHMT2-208ENST00000553868 COL4A1P02462 1669 aa17.9■□□□□ 0.46
SHMT2-208ENST00000553868 H7C1W4 665 aa17.89■□□□□ 0.45
SHMT2-208ENST00000553868 MYCP01106 439 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-208ENST00000553868 GPSM2P81274 684 aa17.89■□□□□ 0.45
SHMT2-208ENST00000553868 PTPN12Q05209 780 aaKnown RBP17.89■□□□□ 0.45
SHMT2-208ENST00000553868 PRKG1Q13976 671 aa17.89■□□□□ 0.45
SHMT2-208ENST00000553868 PARP10Q53GL7 1025 aa17.89■□□□□ 0.45
SHMT2-208ENST00000553868 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-208ENST00000553868 ZBTB47Q9UFB7 747 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-208ENST00000553868 ZNF280AP59817 542 aaPredicted RBP17.88■□□□□ 0.45
SHMT2-208ENST00000553868 MTX1Q13505 466 aa17.88■□□□□ 0.45
SHMT2-208ENST00000553868 UBE3BQ7Z3V4 1068 aa17.88■□□□□ 0.45
SHMT2-208ENST00000553868 TMEM106CQ9BVX2 250 aa17.88■□□□□ 0.45
SHMT2-208ENST00000553868 DDX60Q8IY21 1712 aaKnown RBP17.87■□□□□ 0.45
SHMT2-208ENST00000553868 PCCAP05165 728 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-208ENST00000553868 SUCLG2Q96I99 432 aa17.87■□□□□ 0.45
SHMT2-208ENST00000553868 DCTPP1Q9H773 170 aa17.87■□□□□ 0.45
SHMT2-208ENST00000553868 ZNF609O15014 1411 aa17.87■□□□□ 0.45
SHMT2-208ENST00000553868 HSP90B1P14625 803 aaKnown RBP17.86■□□□□ 0.45
SHMT2-208ENST00000553868 NLRP10Q86W26 655 aa17.86■□□□□ 0.45
SHMT2-208ENST00000553868 ZBTB38Q8NAP3 1195 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-208ENST00000553868 SSH3Q8TE77 659 aa17.86■□□□□ 0.45
SHMT2-208ENST00000553868 CELF1Q92879 486 aaKnown RBP17.86■□□□□ 0.45
SHMT2-208ENST00000553868 ZNF333Q96JL9 665 aa17.86■□□□□ 0.45
SHMT2-208ENST00000553868 MYOZ2Q9NPC6 264 aa17.86■□□□□ 0.45
SHMT2-208ENST00000553868 FZD1Q9UP38 647 aa17.86■□□□□ 0.45
SHMT2-208ENST00000553868 UNC80Q8N2C7 3258 aa17.85■□□□□ 0.45
SHMT2-208ENST00000553868 IGF2BP3O00425 579 aaKnown RBP eCLIP17.85■□□□□ 0.45
SHMT2-208ENST00000553868 SRGAP3O43295 1099 aa17.85■□□□□ 0.45
SHMT2-208ENST00000553868 HSP90AB4PQ58FF6 505 aa17.85■□□□□ 0.45
SHMT2-208ENST00000553868 SPRYD7Q5W111 196 aa17.85■□□□□ 0.45
SHMT2-208ENST00000553868 IFNL1Q8IU54 200 aa17.85■□□□□ 0.45
SHMT2-208ENST00000553868 EFCC1Q9HA90 598 aa17.85■□□□□ 0.45
SHMT2-208ENST00000553868 PITPNM2Q9BZ72 1349 aa17.84■□□□□ 0.45
SHMT2-208ENST00000553868 ALDH1A1P00352 501 aa17.84■□□□□ 0.45
SHMT2-208ENST00000553868 MNX1P50219 401 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-208ENST00000553868 CASP7P55210 303 aa17.84■□□□□ 0.45
SHMT2-208ENST00000553868 POLA2Q14181 598 aa17.84■□□□□ 0.45
SHMT2-208ENST00000553868 NBPF9Q3BBW0 867 aa17.84■□□□□ 0.45
SHMT2-208ENST00000553868 RSBN1LQ6PCB5 846 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-208ENST00000553868 TBC1D16Q8TBP0 767 aa17.84■□□□□ 0.45
SHMT2-208ENST00000553868 ERO1AQ96HE7 468 aa17.84■□□□□ 0.45
SHMT2-208ENST00000553868 BICC1Q9H694 974 aaKnown RBP17.84■□□□□ 0.45
SHMT2-208ENST00000553868 PNMA6EA0A0J9YXQ4 647 aa17.83■□□□□ 0.44
SHMT2-208ENST00000553868 SOX1O00570 391 aaPredicted RBP17.83■□□□□ 0.44
SHMT2-208ENST00000553868 NUCB1Q02818 461 aa17.83■□□□□ 0.44
SHMT2-208ENST00000553868 SLC4A8Q2Y0W8 1093 aa17.83■□□□□ 0.44
SHMT2-208ENST00000553868 TRMT112Q9UI30 125 aaKnown RBP17.83■□□□□ 0.44
SHMT2-208ENST00000553868 WTIPA6NIX2 430 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-208ENST00000553868 RABL6Q3YEC7 729 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-208ENST00000553868 TMC4Q7Z404 712 aa17.82■□□□□ 0.44
SHMT2-208ENST00000553868 KAZALD1Q96I82 304 aa17.82■□□□□ 0.44
SHMT2-208ENST00000553868 LRCH3Q96II8 777 aa17.82■□□□□ 0.44
SHMT2-208ENST00000553868 EYA3Q99504 573 aa17.82■□□□□ 0.44
SHMT2-208ENST00000553868 RAB11FIP3O75154 756 aa17.81■□□□□ 0.44
SHMT2-208ENST00000553868 USP17L8P0C7I0 530 aa17.81■□□□□ 0.44
SHMT2-208ENST00000553868 CRHR2Q13324 411 aa17.81■□□□□ 0.44
SHMT2-208ENST00000553868 ANKRD45Q5TZF3 282 aa17.81■□□□□ 0.44
SHMT2-208ENST00000553868 CHD1LQ86WJ1 897 aa17.81■□□□□ 0.44
SHMT2-208ENST00000553868 AGBL3Q8NEM8 1001 aa17.81■□□□□ 0.44
SHMT2-208ENST00000553868 DPF3Q92784 378 aa17.81■□□□□ 0.44
SHMT2-208ENST00000553868 GMLQ99445 158 aa17.81■□□□□ 0.44
SHMT2-208ENST00000553868 PLA2G12BQ9BX93 195 aa17.81■□□□□ 0.44
SHMT2-208ENST00000553868 PTCH2Q9Y6C5 1203 aa17.81■□□□□ 0.44
SHMT2-208ENST00000553868 SH3TC1Q8TE82 1336 aa17.8■□□□□ 0.44
SHMT2-208ENST00000553868 ERC1Q8IUD2 1116 aa17.8■□□□□ 0.44
SHMT2-208ENST00000553868 JARID2Q92833 1246 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-208ENST00000553868 ZC3H12CQ9C0D7 883 aaKnown RBP17.8■□□□□ 0.44
SHMT2-208ENST00000553868 PRO3102Q9H379 93 aa17.8■□□□□ 0.44
SHMT2-208ENST00000553868 MANSC4A6NHS7 340 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-208ENST00000553868 G3V3G9 751 aa17.79■□□□□ 0.44
SHMT2-208ENST00000553868 SURF6O75683 361 aaKnown RBP17.79■□□□□ 0.44
SHMT2-208ENST00000553868 NF2P35240 595 aa17.79■□□□□ 0.44
SHMT2-208ENST00000553868 FOXO4P98177 505 aa17.79■□□□□ 0.44
SHMT2-208ENST00000553868 SLC9C1Q4G0N8 1177 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms