RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 PNMA6EA0A0J9YXQ4 647 aa23.39■■□□□ 1.33
HDAC4-217ENST00000553145 FKBP1AP62942 108 aaKnown RBP23.39■■□□□ 1.33
HDAC4-217ENST00000553145 NBPF9Q3BBW0 867 aa23.39■■□□□ 1.33
HDAC4-217ENST00000553145 ANGEL2Q5VTE6 544 aaKnown RBP23.39■■□□□ 1.33
HDAC4-217ENST00000553145 OGFOD1Q8N543 542 aa23.39■■□□□ 1.33
HDAC4-217ENST00000553145 PANK1Q8TE04 598 aa23.39■■□□□ 1.33
HDAC4-217ENST00000553145 CELF2O95319 508 aaKnown RBP23.38■■□□□ 1.33
HDAC4-217ENST00000553145 IL15P40933 162 aaPredicted RBP23.38■■□□□ 1.33
HDAC4-217ENST00000553145 BCAMP50895 628 aa23.38■■□□□ 1.33
HDAC4-217ENST00000553145 ZNF408Q9H9D4 720 aa23.38■■□□□ 1.33
HDAC4-217ENST00000553145 RCAN3Q9UKA8 241 aa23.38■■□□□ 1.33
HDAC4-217ENST00000553145 ARAP2Q8WZ64 1704 aa23.37■■□□□ 1.33
HDAC4-217ENST00000553145 WNT10BO00744 389 aa23.37■■□□□ 1.33
HDAC4-217ENST00000553145 ZBTB7BO15156 539 aaPredicted RBP23.37■■□□□ 1.33
HDAC4-217ENST00000553145 IFIT1P09914 478 aaKnown RBP23.37■■□□□ 1.33
HDAC4-217ENST00000553145 CAVIN4Q5BKX8 364 aa23.37■■□□□ 1.33
HDAC4-217ENST00000553145 C1orf115Q9H7X2 142 aa23.37■■□□□ 1.33
HDAC4-217ENST00000553145 CEP126Q9P2H0 1117 aa23.37■■□□□ 1.33
HDAC4-217ENST00000553145 ABT1Q9ULW3 272 aaKnown RBP23.37■■□□□ 1.33
HDAC4-217ENST00000553145 RASSF10A6NK89 507 aa23.36■■□□□ 1.33
HDAC4-217ENST00000553145 F8W031 263 aaPredicted RBP23.36■■□□□ 1.33
HDAC4-217ENST00000553145 SLC5A1P13866 664 aa23.36■■□□□ 1.33
HDAC4-217ENST00000553145 ATP2B3Q16720 1220 aa23.36■■□□□ 1.33
HDAC4-217ENST00000553145 VPS37DQ86XT2 251 aa23.36■■□□□ 1.33
HDAC4-217ENST00000553145 LPIN2Q92539 896 aa23.36■■□□□ 1.33
HDAC4-217ENST00000553145 ZBED3Q96IU2 234 aaPredicted RBP23.36■■□□□ 1.33
HDAC4-217ENST00000553145 HDAC9Q9UKV0 1011 aa23.36■■□□□ 1.33
HDAC4-217ENST00000553145 SCAF8Q9UPN6 1271 aaKnown RBP23.36■■□□□ 1.33
HDAC4-217ENST00000553145 MFSD14BQ5SR56 506 aa23.35■■□□□ 1.33
HDAC4-217ENST00000553145 SULF1Q8IWU6 871 aa23.35■■□□□ 1.33
HDAC4-217ENST00000553145 PCDHAC2Q9Y5I4 1007 aa23.35■■□□□ 1.33
HDAC4-217ENST00000553145 TLL2Q9Y6L7 1015 aa23.35■■□□□ 1.33
HDAC4-217ENST00000553145 PITPNM2Q9BZ72 1349 aa23.34■■□□□ 1.33
HDAC4-217ENST00000553145 MMP14P50281 582 aa23.34■■□□□ 1.33
HDAC4-217ENST00000553145 CHAF1AQ13111 956 aaPredicted RBP23.34■■□□□ 1.33
HDAC4-217ENST00000553145 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.34■■□□□ 1.33
HDAC4-217ENST00000553145 COL1A1P02452 1464 aaPredicted RBP23.33■■□□□ 1.33
HDAC4-217ENST00000553145 VEGFBP49765 207 aa23.33■■□□□ 1.33
HDAC4-217ENST00000553145 GRIK5Q16478 980 aa23.33■■□□□ 1.33
HDAC4-217ENST00000553145 DEFB115Q30KQ5 88 aa23.33■■□□□ 1.33
HDAC4-217ENST00000553145 TFCP2Q12800 502 aa23.32■■□□□ 1.32
HDAC4-217ENST00000553145 POLA2Q14181 598 aa23.32■■□□□ 1.32
HDAC4-217ENST00000553145 CDCA5Q96FF9 252 aa23.32■■□□□ 1.32
HDAC4-217ENST00000553145 FRAT2O75474 233 aaPredicted RBP23.31■■□□□ 1.32
HDAC4-217ENST00000553145 ATP8B2P98198 1209 aa23.31■■□□□ 1.32
HDAC4-217ENST00000553145 CFAP100Q494V2 611 aa23.31■■□□□ 1.32
HDAC4-217ENST00000553145 SAPCD2Q86UD0 394 aa23.31■■□□□ 1.32
HDAC4-217ENST00000553145 MTMR14Q8NCE2 650 aa23.31■■□□□ 1.32
HDAC4-217ENST00000553145 AOX1Q06278 1338 aa23.31■■□□□ 1.32
HDAC4-217ENST00000553145 ADORA1P30542 326 aa23.3■■□□□ 1.32
HDAC4-217ENST00000553145 DLGAP5Q15398 846 aa23.3■■□□□ 1.32
HDAC4-217ENST00000553145 SSH3Q8TE77 659 aa23.3■■□□□ 1.32
HDAC4-217ENST00000553145 MYH13Q9UKX3 1938 aa23.29■■□□□ 1.32
HDAC4-217ENST00000553145 TTF2Q9UNY4 1162 aaKnown RBP23.29■■□□□ 1.32
HDAC4-217ENST00000553145 ECM29Q5VYK3 1845 aa23.29■■□□□ 1.32
HDAC4-217ENST00000553145 SPDYE2BA6NHP3 402 aa23.28■■□□□ 1.32
HDAC4-217ENST00000553145 SPDYE6P0CI01 402 aa23.28■■□□□ 1.32
HDAC4-217ENST00000553145 MS4A1P11836 297 aa23.28■■□□□ 1.32
HDAC4-217ENST00000553145 PHKA1P46020 1223 aa23.28■■□□□ 1.32
HDAC4-217ENST00000553145 TIMM10P62072 90 aa23.28■■□□□ 1.32
HDAC4-217ENST00000553145 MVPQ14764 893 aaKnown RBP23.28■■□□□ 1.32
HDAC4-217ENST00000553145 PRAMEF18Q5VWM3 479 aa23.28■■□□□ 1.32
HDAC4-217ENST00000553145 CYP4F22Q6NT55 531 aa23.28■■□□□ 1.32
HDAC4-217ENST00000553145 PRMT6Q96LA8 375 aaPredicted RBP23.28■■□□□ 1.32
HDAC4-217ENST00000553145 COG6Q9Y2V7 657 aa23.28■■□□□ 1.32
HDAC4-217ENST00000553145 A0A1B0GUL7 405 aa23.27■■□□□ 1.32
HDAC4-217ENST00000553145 TBC1D22AQ8WUA7 517 aa23.27■■□□□ 1.32
HDAC4-217ENST00000553145 GBA2Q9HCG7 927 aaPredicted RBP23.27■■□□□ 1.32
HDAC4-217ENST00000553145 WDR33Q9C0J8 1336 aaKnown RBP23.27■■□□□ 1.32
HDAC4-217ENST00000553145 THSD7BQ9C0I4 1608 aa23.26■■□□□ 1.31
HDAC4-217ENST00000553145 G3BP1Q13283 466 aaKnown RBP eCLIP23.26■■□□□ 1.31
HDAC4-217ENST00000553145 C20orf194Q5TEA3 1177 aa23.26■■□□□ 1.31
HDAC4-217ENST00000553145 CEP85Q6P2H3 762 aa23.26■■□□□ 1.31
HDAC4-217ENST00000553145 PAXIP1Q6ZW49 1069 aaPredicted RBP23.26■■□□□ 1.31
HDAC4-217ENST00000553145 CAPNS2Q96L46 248 aa23.26■■□□□ 1.31
HDAC4-217ENST00000553145 YTHDC1Q96MU7 727 aaKnown RBP23.26■■□□□ 1.31
HDAC4-217ENST00000553145 CLRN2A0PK11 232 aa23.25■■□□□ 1.31
HDAC4-217ENST00000553145 RBM5P52756 815 aaKnown RBP eCLIP23.25■■□□□ 1.31
HDAC4-217ENST00000553145 CCDC102BQ68D86 513 aa23.25■■□□□ 1.31
HDAC4-217ENST00000553145 APOBEC3FQ8IUX4 373 aaKnown RBP23.25■■□□□ 1.31
HDAC4-217ENST00000553145 SERPINA10Q9UK55 444 aa23.25■■□□□ 1.31
HDAC4-217ENST00000553145 AKAP2Q9Y2D5 859 aa23.25■■□□□ 1.31
HDAC4-217ENST00000553145 HSPA1AP0DMV8 641 aaKnown RBP23.24■■□□□ 1.31
HDAC4-217ENST00000553145 HSPA1BP0DMV9 641 aaKnown RBP23.24■■□□□ 1.31
HDAC4-217ENST00000553145 CRKP46108 304 aa23.24■■□□□ 1.31
HDAC4-217ENST00000553145 HUNKP57058 714 aa23.24■■□□□ 1.31
HDAC4-217ENST00000553145 GRM1Q13255 1194 aa23.24■■□□□ 1.31
HDAC4-217ENST00000553145 C2orf69Q8N8R5 385 aa23.24■■□□□ 1.31
HDAC4-217ENST00000553145 XAGE2Q96GT9 111 aa23.24■■□□□ 1.31
HDAC4-217ENST00000553145 HHIPL1Q96JK4 782 aa23.24■■□□□ 1.31
HDAC4-217ENST00000553145 GNL3LQ9NVN8 582 aaKnown RBP23.23■■□□□ 1.31
HDAC4-217ENST00000553145 DDX19BQ9UMR2 479 aa23.23■■□□□ 1.31
HDAC4-217ENST00000553145 PAPPA2Q9BXP8 1791 aa23.22■■□□□ 1.31
HDAC4-217ENST00000553145 SURF6O75683 361 aaKnown RBP23.22■■□□□ 1.31
HDAC4-217ENST00000553145 WDR66Q8TBY9 1149 aa23.22■■□□□ 1.31
HDAC4-217ENST00000553145 NOP58Q9Y2X3 529 aaKnown RBP23.22■■□□□ 1.31
HDAC4-217ENST00000553145 SEMA3EO15041 775 aa23.21■■□□□ 1.31
HDAC4-217ENST00000553145 MYO1BO43795 1136 aa23.21■■□□□ 1.31
HDAC4-217ENST00000553145 ECE1P42892 770 aa23.21■■□□□ 1.31
HDAC4-217ENST00000553145 RASGRF1Q13972 1273 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms