RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 GTF3C6Q969F1 213 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 UTP14AQ9BVJ6 771 aaKnown RBP6.57□□□□□ -1.36
LIMA1-215ENST00000552823 TRIM5Q9C035 493 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 NAPBQ9H115 298 aa6.57□□□□□ -1.36
LIMA1-215ENST00000552823 IFIT3O14879 490 aaKnown RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 PDIA3P30101 505 aaKnown RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 ANO6Q4KMQ2 910 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 ZSCAN30Q86W11 494 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 CCAR1Q8IX12 1150 aaKnown RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 CCDC87Q9NVE4 849 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 HMG20BQ9P0W2 317 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 PDE8AO60658 829 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 PDE8BO95263 885 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 CYP7A1P22680 504 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 MAP3K11Q16584 847 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 ERFEQ4G0M1 354 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 MEX3CQ5U5Q3 659 aaKnown RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 SASS6Q6UVJ0 657 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 POTEDQ86YR6 584 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 CREBRFQ8IUR6 639 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 FSIP1Q8NA03 581 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 NSUN7Q8NE18 718 aaKnown RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 PGBD1Q96JS3 809 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 C8orf76Q96K31 380 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 TEX13AQ9BXU3 409 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 FAM13BQ9NYF5 915 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 ZNF219Q9P2Y4 722 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 RIPOR2Q9Y4F9 1068 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 SLC4A4Q9Y6R1 1079 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 SH3TC1Q8TE82 1336 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 OVOS2A0A0G2JMS6 1433 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 PXDNLA1KZ92 1463 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 FAM208AQ9UK61 1670 aaKnown RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 GNPATO15228 680 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 RANBP6O60518 1105 aaKnown RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 CTDNEP1O95476 244 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 PDE6AP16499 860 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 DYNLL1P63167 89 aaKnown RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 EVX2Q03828 476 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 RASGRF1Q13972 1273 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 ZRSR1Q15695 479 aaKnown RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 ISY1Q9ULR0 285 aaKnown RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 MED23Q9ULK4 1368 aa6.56□□□□□ -1.36
LIMA1-215ENST00000552823 COL5A2P05997 1499 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-215ENST00000552823 TMEM67Q5HYA8 995 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 USPL1Q5W0Q7 1092 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 SYNE3Q6ZMZ3 975 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 CLEC17AQ6ZS10 378 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 FILIP1Q7Z7B0 1213 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 TBC1D10CQ8IV04 446 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 PDILTQ8N807 584 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 APPBP2Q92624 585 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 SLC26A6Q9BXS9 759 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 HELLSQ9NRZ9 838 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 KCNJ14Q9UNX9 436 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 MARF1Q9Y4F3 1742 aaKnown RBP6.55□□□□□ -1.36
LIMA1-215ENST00000552823 BECN2A8MW95 431 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 SLC5A1P13866 664 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 KLRK1P26718 216 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 MCM5P33992 734 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 CSPP1Q1MSJ5 1256 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 CCDC73Q6ZRK6 1079 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 CYB5R4Q7L1T6 521 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 NCOA7Q8NI08 942 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 NRBP1Q9UHY1 535 aa6.55□□□□□ -1.36
LIMA1-215ENST00000552823 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.55□□□□□ -1.36
LIMA1-215ENST00000552823 AP5Z1O43299 807 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 CCDC192P0DO97 292 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 CLCN1P35523 988 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 TYRO3Q06418 890 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 CHRNDQ07001 517 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 KIAA2012Q0VF49 1180 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 NKX1-1Q15270 411 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-215ENST00000552823 LCORLQ8N3X6 602 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 SPATA5Q8NB90 893 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 ZNF592Q92610 1267 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 CELF1Q92879 486 aaKnown RBP6.54□□□□□ -1.36
LIMA1-215ENST00000552823 CTNNA3Q9UI47 895 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 CLIC4Q9Y696 253 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 SLIT3O75094 1523 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 MAP3K12Q12852 859 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 GOLGA8AA7E2F4 631 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 RAD21O60216 631 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 KINO60870 393 aaKnown RBP6.54□□□□□ -1.36
LIMA1-215ENST00000552823 METAP2P50579 478 aaKnown RBP eCLIP6.54□□□□□ -1.36
LIMA1-215ENST00000552823 ANTXR2P58335 489 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 LRMPQ12912 555 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 INTS5Q6P9B9 1019 aaKnown RBP6.54□□□□□ -1.36
LIMA1-215ENST00000552823 NBPF5PQ86XG9 351 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-215ENST00000552823 CLIC6Q96NY7 704 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 ALG1Q9BT22 464 aa6.54□□□□□ -1.36
LIMA1-215ENST00000552823 CPDO75976 1380 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 CCDC69A6NI79 296 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 PTGS1P23219 599 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 ZNF165P49910 485 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 LRRFIP1Q32MZ4 808 aaKnown RBP6.53□□□□□ -1.36
LIMA1-215ENST00000552823 CCDC152Q4G0S7 254 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 DSCC1Q9BVC3 393 aa6.53□□□□□ -1.36
LIMA1-215ENST00000552823 SCAND2PQ9GZW5 306 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms