RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TMEM94Q12767 1356 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 MED14O60244 1454 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 MROH2AA6NES4 1674 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 KIDINS220Q9ULH0 1771 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 ARHGAP5Q13017 1502 aa5.74□□□□□ -1.49
LIMA1-208ENST00000551691 SSFA2P28290 1259 aa5.73□□□□□ -1.49
LIMA1-208ENST00000551691 AFF1P51825 1210 aaKnown RBP5.73□□□□□ -1.49
LIMA1-208ENST00000551691 SEC13P55735 322 aa5.73□□□□□ -1.49
LIMA1-208ENST00000551691 DPYDQ12882 1025 aa5.73□□□□□ -1.49
LIMA1-208ENST00000551691 ADGRE1Q14246 886 aa5.73□□□□□ -1.49
LIMA1-208ENST00000551691 TXNDC2Q86VQ3 553 aa5.73□□□□□ -1.49
LIMA1-208ENST00000551691 C8orf37Q96NL8 207 aa5.73□□□□□ -1.49
LIMA1-208ENST00000551691 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.73□□□□□ -1.49
LIMA1-208ENST00000551691 SPAG9O60271 1321 aaKnown RBP5.73□□□□□ -1.49
LIMA1-208ENST00000551691 C9orf172C9J069 976 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 IGSF3O75054 1194 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 RGS9O75916 674 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-208ENST00000551691 ELNP15502 786 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 RAC1P63000 192 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 NRG1Q02297 640 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-208ENST00000551691 PTK7Q13308 1070 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 SWI5Q1ZZU3 235 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 ZNF326Q5BKZ1 582 aaKnown RBP5.72□□□□□ -1.49
LIMA1-208ENST00000551691 FAM35AQ86V20 835 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 CLP1Q92989 425 aaKnown RBP5.72□□□□□ -1.49
LIMA1-208ENST00000551691 TP53INP1Q96A56 240 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 MRRFQ96E11 262 aaKnown RBP5.72□□□□□ -1.49
LIMA1-208ENST00000551691 ITSN2Q9NZM3 1697 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 CEP350Q5VT06 3117 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 SPATA31A6Q5VVP1 1343 aa5.72□□□□□ -1.49
LIMA1-208ENST00000551691 PHLPP1O60346 1717 aa5.71□□□□□ -1.49
LIMA1-208ENST00000551691 KIF14Q15058 1648 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 RBM47A0AV96 593 aaKnown RBP5.71□□□□□ -1.5
LIMA1-208ENST00000551691 SOWAHDA6NJG2 315 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-208ENST00000551691 SERPINB4P48594 390 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 IDH3AP50213 366 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 CCINQ13939 588 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 RTN1Q16799 776 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 HFE2Q6ZVN8 426 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 TXNRD3Q86VQ6 643 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 FMR1NBQ8N0W7 255 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-208ENST00000551691 SLC26A8Q96RN1 970 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 KRTAP9-2Q9BYQ4 174 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 ZFATQ9P243 1243 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 DMGDHQ9UI17 866 aaKnown RBP5.71□□□□□ -1.5
LIMA1-208ENST00000551691 IQGAP1P46940 1657 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 MIA2Q96PC5 1412 aa5.71□□□□□ -1.5
LIMA1-208ENST00000551691 CDK12Q9NYV4 1490 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-208ENST00000551691 ZBTB42B2RXF5 422 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 TGFBR3LH3BV60 316 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 SASH3O75995 380 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 TARSP26639 723 aaKnown RBP5.7□□□□□ -1.5
LIMA1-208ENST00000551691 DGKZQ13574 1117 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 PERM1Q5SV97 790 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 GLYCTKQ8IVS8 523 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 GIPC2Q8TF65 315 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 ZFP64Q9NPA5 681 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 SAMD9Q5K651 1589 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 MYO5CQ9NQX4 1742 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 PRXQ9BXM0 1461 aa5.7□□□□□ -1.5
LIMA1-208ENST00000551691 UGGT1Q9NYU2 1555 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 KRTAP9-6A0A140TA67 174 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 H3BRB1 525 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 KIF3BO15066 747 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 PRMT3O60678 531 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 KCNA6P17658 529 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 ARTNQ5T4W7 220 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 STAG2Q8N3U4 1231 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 LENG1Q96BZ8 264 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-208ENST00000551691 IFT43Q96FT9 208 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 LPIN3Q9BQK8 851 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 TUT1Q9H6E5 874 aaKnown RBP5.69□□□□□ -1.5
LIMA1-208ENST00000551691 WASHC2CQ9Y4E1 1318 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 FAM135AQ9P2D6 1515 aa5.69□□□□□ -1.5
LIMA1-208ENST00000551691 CDC42BPBQ9Y5S2 1711 aa5.68□□□□□ -1.5
LIMA1-208ENST00000551691 DEPDC5O75140 1603 aa5.68□□□□□ -1.5
LIMA1-208ENST00000551691 MAPK1P28482 360 aa5.68□□□□□ -1.5
LIMA1-208ENST00000551691 INPP5BP32019 993 aa5.68□□□□□ -1.5
LIMA1-208ENST00000551691 IREB2P48200 963 aaKnown RBP5.68□□□□□ -1.5
LIMA1-208ENST00000551691 GRIK5Q16478 980 aa5.68□□□□□ -1.5
LIMA1-208ENST00000551691 HIF1AQ16665 826 aa5.68□□□□□ -1.5
LIMA1-208ENST00000551691 MSL1Q68DK7 614 aa5.68□□□□□ -1.5
LIMA1-208ENST00000551691 PHLDB3Q6NSJ2 640 aa5.68□□□□□ -1.5
LIMA1-208ENST00000551691 DHX32Q7L7V1 743 aaKnown RBP5.68□□□□□ -1.5
LIMA1-208ENST00000551691 NBPF11Q86T75 865 aa5.68□□□□□ -1.5
LIMA1-208ENST00000551691 DDX17Q92841 729 aaKnown RBP5.68□□□□□ -1.5
LIMA1-208ENST00000551691 A2MP01023 1474 aa5.68□□□□□ -1.5
LIMA1-208ENST00000551691 SYNMO15061 1565 aa5.67□□□□□ -1.5
LIMA1-208ENST00000551691 ANKRD33BA6NCL7 494 aa5.67□□□□□ -1.5
LIMA1-208ENST00000551691 HMGB1P09429 215 aaKnown RBP5.67□□□□□ -1.5
LIMA1-208ENST00000551691 RARAP10276 462 aa5.67□□□□□ -1.5
LIMA1-208ENST00000551691 IER5Q5VY09 327 aa5.67□□□□□ -1.5
LIMA1-208ENST00000551691 ELMSAN1Q6PJG2 1045 aa5.67□□□□□ -1.5
LIMA1-208ENST00000551691 ZSCAN29Q8IWY8 852 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-208ENST00000551691 UTRNP46939 3433 aa5.67□□□□□ -1.5
LIMA1-208ENST00000551691 SAMD9LQ8IVG5 1584 aa5.67□□□□□ -1.5
LIMA1-208ENST00000551691 COL16A1Q07092 1604 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-208ENST00000551691 ZC3H13Q5T200 1668 aaKnown RBP5.66□□□□□ -1.5
LIMA1-208ENST00000551691 UNCXA6NJT0 531 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms