RNA–Protein interactions for RNA: ENST00000550283.1

RAB5B-208, Transcript of RAB5B, member RAS oncogene family, human

TSL 3

Gene RAB5B, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB5B-208	ENST00000550283	IL15	P40933	162 aa	Predicted RBP	13.95	□□□□□ -0.18
RAB5B-208	ENST00000550283	ZNF280A	P59817	542 aa	Predicted RBP	13.95	□□□□□ -0.18
RAB5B-208	ENST00000550283	PDE3A	Q14432	1141 aa		13.95	□□□□□ -0.18
RAB5B-208	ENST00000550283	PUM3	Q15397	648 aa	Known RBP	13.95	□□□□□ -0.18
RAB5B-208	ENST00000550283	ATP2B3	Q16720	1220 aa		13.95	□□□□□ -0.18
RAB5B-208	ENST00000550283	STRIP1	Q5VSL9	837 aa		13.95	□□□□□ -0.18
RAB5B-208	ENST00000550283	TTLL5	Q6EMB2	1281 aa		13.95	□□□□□ -0.18
RAB5B-208	ENST00000550283	SMC1B	Q8NDV3	1235 aa		13.95	□□□□□ -0.18
RAB5B-208	ENST00000550283	PCDH10	Q9P2E7	1040 aa		13.95	□□□□□ -0.18
RAB5B-208	ENST00000550283	CLEC11A	Q9Y240	323 aa		13.95	□□□□□ -0.18
RAB5B-208	ENST00000550283	PHKA1	P46020	1223 aa		13.94	□□□□□ -0.18
RAB5B-208	ENST00000550283	FSTL1	Q12841	308 aa		13.94	□□□□□ -0.18
RAB5B-208	ENST00000550283	ZNF804A	Q7Z570	1209 aa		13.94	□□□□□ -0.18
RAB5B-208	ENST00000550283	KIAA0825	Q8IV33	1275 aa		13.94	□□□□□ -0.18
RAB5B-208	ENST00000550283	CEP126	Q9P2H0	1117 aa		13.94	□□□□□ -0.18
RAB5B-208	ENST00000550283	FAM205A	Q6ZU69	1335 aa		13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	PASK	Q96RG2	1323 aa		13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	ARAP2	Q8WZ64	1704 aa		13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	RPS12	P25398	132 aa	Known RBP	13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	USP50	Q70EL3	339 aa	Predicted RBP	13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	AGBL3	Q8NEM8	1001 aa		13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	LPIN2	Q92539	896 aa		13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	CRBN	Q96SW2	442 aa		13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	FBXO3	Q9UK99	471 aa		13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	DDX19B	Q9UMR2	479 aa		13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	HDAC5	Q9UQL6	1122 aa		13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283	EXOC6B	Q9Y2D4	811 aa		13.93	□□□□□ -0.18
RAB5B-208	ENST00000550283		F8W031	263 aa	Predicted RBP	13.92	□□□□□ -0.18
RAB5B-208	ENST00000550283	SURF6	O75683	361 aa	Known RBP	13.92	□□□□□ -0.18
RAB5B-208	ENST00000550283	CHAF1A	Q13111	956 aa	Predicted RBP	13.92	□□□□□ -0.18
RAB5B-208	ENST00000550283	KIF4B	Q2VIQ3	1234 aa		13.92	□□□□□ -0.18
RAB5B-208	ENST00000550283	NBPF9	Q3BBW0	867 aa		13.92	□□□□□ -0.18
RAB5B-208	ENST00000550283	PNMA8A	Q86V59	439 aa	Predicted RBP	13.92	□□□□□ -0.18
RAB5B-208	ENST00000550283	CNTROB	Q8N137	903 aa		13.92	□□□□□ -0.18
RAB5B-208	ENST00000550283	TLR7	Q9NYK1	1049 aa	Known RBP	13.92	□□□□□ -0.18
RAB5B-208	ENST00000550283	PGAP2	Q9UHJ9	254 aa		13.92	□□□□□ -0.18
RAB5B-208	ENST00000550283	NOP58	Q9Y2X3	529 aa	Known RBP	13.92	□□□□□ -0.18
RAB5B-208	ENST00000550283		A0A1B0GUL7	405 aa		13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283	ADM5	C9JUS6	153 aa		13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283		H7C1D1	291 aa		13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283	IFIT1	P09914	478 aa	Known RBP	13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283	USP17L8	P0C7I0	530 aa		13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283	MS4A1	P11836	297 aa		13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283	SLC5A1	P13866	664 aa		13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283	SCARF1	Q14162	830 aa		13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283	ZBED3	Q96IU2	234 aa	Predicted RBP	13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283	MYOZ2	Q9NPC6	264 aa		13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283	FOXD4L1	Q9NU39	408 aa		13.91	□□□□□ -0.18
RAB5B-208	ENST00000550283	CCDC102B	Q68D86	513 aa		13.9	□□□□□ -0.18
RAB5B-208	ENST00000550283	PI16	Q6UXB8	463 aa		13.9	□□□□□ -0.18
RAB5B-208	ENST00000550283	XAGE2	Q96GT9	111 aa		13.9	□□□□□ -0.18
RAB5B-208	ENST00000550283	PCDHB15	Q9Y5E8	787 aa		13.9	□□□□□ -0.18
RAB5B-208	ENST00000550283	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
RAB5B-208	ENST00000550283	MFSD14B	Q5SR56	506 aa		13.89	□□□□□ -0.19
RAB5B-208	ENST00000550283	CST9	Q5W186	159 aa		13.89	□□□□□ -0.19
RAB5B-208	ENST00000550283	USP48	Q86UV5	1035 aa		13.89	□□□□□ -0.19
RAB5B-208	ENST00000550283	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.89	□□□□□ -0.19
RAB5B-208	ENST00000550283	DBNDD2	Q9BQY9	259 aa		13.89	□□□□□ -0.19
RAB5B-208	ENST00000550283	GGA3	Q9NZ52	723 aa		13.89	□□□□□ -0.19
RAB5B-208	ENST00000550283	APBB1	O00213	710 aa		13.88	□□□□□ -0.19
RAB5B-208	ENST00000550283	WNT10B	O00744	389 aa		13.88	□□□□□ -0.19
RAB5B-208	ENST00000550283	RASGRF1	Q13972	1273 aa		13.88	□□□□□ -0.19
RAB5B-208	ENST00000550283	TNNI3K	Q59H18	835 aa		13.88	□□□□□ -0.19
RAB5B-208	ENST00000550283	CAVIN4	Q5BKX8	364 aa		13.88	□□□□□ -0.19
RAB5B-208	ENST00000550283	ANGEL2	Q5VTE6	544 aa	Known RBP	13.88	□□□□□ -0.19
RAB5B-208	ENST00000550283	PRAMEF18	Q5VWM3	479 aa		13.88	□□□□□ -0.19
RAB5B-208	ENST00000550283	EAF2	Q96CJ1	260 aa	Predicted RBP	13.88	□□□□□ -0.19
RAB5B-208	ENST00000550283	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.88	□□□□□ -0.19
RAB5B-208	ENST00000550283	FPGT-TNNI3K	V9GXZ4	949 aa		13.88	□□□□□ -0.19
RAB5B-208	ENST00000550283	VPS37D	Q86XT2	251 aa		13.87	□□□□□ -0.19
RAB5B-208	ENST00000550283	PRMT6	Q96LA8	375 aa	Predicted RBP	13.87	□□□□□ -0.19
RAB5B-208	ENST00000550283	NEUROD6	Q96NK8	337 aa		13.87	□□□□□ -0.19
RAB5B-208	ENST00000550283	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.87	□□□□□ -0.19
RAB5B-208	ENST00000550283	IL1RAPL2	Q9NP60	686 aa		13.87	□□□□□ -0.19
RAB5B-208	ENST00000550283	DBNL	Q9UJU6	430 aa	Known RBP	13.87	□□□□□ -0.19
RAB5B-208	ENST00000550283	POLR2A	P24928	1970 aa	Known RBP	13.87	□□□□□ -0.19
RAB5B-208	ENST00000550283	MYO3B	Q8WXR4	1341 aa		13.87	□□□□□ -0.19
RAB5B-208	ENST00000550283	PRDX5	P30044	214 aa		13.86	□□□□□ -0.19
RAB5B-208	ENST00000550283	FKBP1A	P62942	108 aa	Known RBP	13.86	□□□□□ -0.19
RAB5B-208	ENST00000550283	OS9	Q13438	667 aa	Predicted RBP	13.86	□□□□□ -0.19
RAB5B-208	ENST00000550283	CFAP100	Q494V2	611 aa		13.86	□□□□□ -0.19
RAB5B-208	ENST00000550283	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.86	□□□□□ -0.19
RAB5B-208	ENST00000550283	JMY	Q8N9B5	988 aa		13.86	□□□□□ -0.19
RAB5B-208	ENST00000550283	ZNF384	Q8TF68	577 aa		13.86	□□□□□ -0.19
RAB5B-208	ENST00000550283	KLRG1	Q96E93	195 aa		13.86	□□□□□ -0.19
RAB5B-208	ENST00000550283	TTF2	Q9UNY4	1162 aa	Known RBP	13.86	□□□□□ -0.19
RAB5B-208	ENST00000550283	MCAM	P43121	646 aa		13.85	□□□□□ -0.19
RAB5B-208	ENST00000550283	IRX6	P78412	446 aa	Predicted RBP	13.85	□□□□□ -0.19
RAB5B-208	ENST00000550283	ZC3H15	Q8WU90	426 aa	Known RBP	13.85	□□□□□ -0.19
RAB5B-208	ENST00000550283	HMG20B	Q9P0W2	317 aa		13.85	□□□□□ -0.19
RAB5B-208	ENST00000550283	NDUFB9	Q9Y6M9	179 aa		13.85	□□□□□ -0.19
RAB5B-208	ENST00000550283	CLRN2	A0PK11	232 aa		13.84	□□□□□ -0.19
RAB5B-208	ENST00000550283	SPDYE2B	A6NHP3	402 aa		13.84	□□□□□ -0.19
RAB5B-208	ENST00000550283	SMARCA5	O60264	1052 aa	Predicted RBP	13.84	□□□□□ -0.19
RAB5B-208	ENST00000550283	FRAT2	O75474	233 aa	Predicted RBP	13.84	□□□□□ -0.19
RAB5B-208	ENST00000550283	SPDYE6	P0CI01	402 aa		13.84	□□□□□ -0.19
RAB5B-208	ENST00000550283	DIXDC1	Q155Q3	683 aa		13.84	□□□□□ -0.19
RAB5B-208	ENST00000550283	TBC1D9	Q6ZT07	1266 aa		13.84	□□□□□ -0.19
RAB5B-208	ENST00000550283	KRT26	Q7Z3Y9	468 aa		13.84	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms