RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CDCA5Q96FF9 252 aa13.76□□□□□ -0.21
VPS29-208ENST00000550267 DDX60Q8IY21 1712 aaKnown RBP13.76□□□□□ -0.21
VPS29-208ENST00000550267 RASAL3Q86YV0 1011 aa13.75□□□□□ -0.21
VPS29-208ENST00000550267 SF3B3Q15393 1217 aaKnown RBP13.74□□□□□ -0.21
VPS29-208ENST00000550267 FAM89AQ96GI7 184 aa13.74□□□□□ -0.21
VPS29-208ENST00000550267 EYA3Q99504 573 aa13.74□□□□□ -0.21
VPS29-208ENST00000550267 HPS5Q9UPZ3 1129 aa13.74□□□□□ -0.21
VPS29-208ENST00000550267 PCDHGA10Q9Y5H3 936 aa13.74□□□□□ -0.21
VPS29-208ENST00000550267 PPP1R3GB7ZBB8 358 aa13.73□□□□□ -0.21
VPS29-208ENST00000550267 VIL1P09327 827 aaKnown RBP13.73□□□□□ -0.21
VPS29-208ENST00000550267 RIPK4P57078 832 aa13.73□□□□□ -0.21
VPS29-208ENST00000550267 KRT24Q2M2I5 525 aa13.73□□□□□ -0.21
VPS29-208ENST00000550267 TBC1D16Q8TBP0 767 aa13.73□□□□□ -0.21
VPS29-208ENST00000550267 ATP5J2-PTCD1G3V325 749 aa13.72□□□□□ -0.21
VPS29-208ENST00000550267 RGS20O76081 388 aa13.72□□□□□ -0.21
VPS29-208ENST00000550267 RTL5Q5HYW3 569 aaPredicted RBP13.72□□□□□ -0.21
VPS29-208ENST00000550267 ANGEL2Q5VTE6 544 aaKnown RBP13.72□□□□□ -0.21
VPS29-208ENST00000550267 ISCA1Q9BUE6 129 aa13.72□□□□□ -0.21
VPS29-208ENST00000550267 ZC3H12CQ9C0D7 883 aaKnown RBP13.72□□□□□ -0.21
VPS29-208ENST00000550267 PNNQ9H307 717 aaKnown RBP13.72□□□□□ -0.21
VPS29-208ENST00000550267 BABAM1Q9NWV8 329 aa13.72□□□□□ -0.21
VPS29-208ENST00000550267 CHPF2Q9P2E5 772 aa13.72□□□□□ -0.21
VPS29-208ENST00000550267 AKAP11Q9UKA4 1901 aa13.71□□□□□ -0.21
VPS29-208ENST00000550267 SCARF1Q14162 830 aa13.71□□□□□ -0.21
VPS29-208ENST00000550267 MOB2Q70IA6 237 aa13.71□□□□□ -0.21
VPS29-208ENST00000550267 PLBD2Q8NHP8 589 aa13.71□□□□□ -0.21
VPS29-208ENST00000550267 HDAC9Q9UKV0 1011 aa13.71□□□□□ -0.21
VPS29-208ENST00000550267 TBC1D8O95759 1140 aa13.7□□□□□ -0.22
VPS29-208ENST00000550267 RPS8P62241 208 aaKnown RBP13.7□□□□□ -0.22
VPS29-208ENST00000550267 ZNF296Q8WUU4 475 aaPredicted RBP13.7□□□□□ -0.22
VPS29-208ENST00000550267 FBXW7Q969H0 707 aa13.7□□□□□ -0.22
VPS29-208ENST00000550267 RABGEF1Q9UJ41 708 aa13.7□□□□□ -0.22
VPS29-208ENST00000550267 SCAF8Q9UPN6 1271 aaKnown RBP13.7□□□□□ -0.22
VPS29-208ENST00000550267 POLR2AP24928 1970 aaKnown RBP13.7□□□□□ -0.22
VPS29-208ENST00000550267 PAPPA2Q9BXP8 1791 aa13.69□□□□□ -0.22
VPS29-208ENST00000550267 IRS4O14654 1257 aaPredicted RBP13.69□□□□□ -0.22
VPS29-208ENST00000550267 UFL1O94874 794 aa13.69□□□□□ -0.22
VPS29-208ENST00000550267 ZNF280AP59817 542 aaPredicted RBP13.69□□□□□ -0.22
VPS29-208ENST00000550267 FKBP1BP68106 108 aa13.69□□□□□ -0.22
VPS29-208ENST00000550267 PKN2Q16513 984 aaKnown RBP13.69□□□□□ -0.22
VPS29-208ENST00000550267 RSBN1LQ6PCB5 846 aaPredicted RBP13.69□□□□□ -0.22
VPS29-208ENST00000550267 SCN9AQ15858 1988 aa13.69□□□□□ -0.22
VPS29-208ENST00000550267 UBE2Q2LH0YL09 131 aa13.68□□□□□ -0.22
VPS29-208ENST00000550267 TMPOP42166 694 aaKnown RBP13.68□□□□□ -0.22
VPS29-208ENST00000550267 HDGFL1Q5TGJ6 251 aa13.68□□□□□ -0.22
VPS29-208ENST00000550267 TYW1BQ6NUM6 668 aa13.68□□□□□ -0.22
VPS29-208ENST00000550267 AGBL3Q8NEM8 1001 aa13.68□□□□□ -0.22
VPS29-208ENST00000550267 SEC31BQ9NQW1 1179 aa13.68□□□□□ -0.22
VPS29-208ENST00000550267 PODXL2Q9NZ53 605 aa13.68□□□□□ -0.22
VPS29-208ENST00000550267 ZNF609O15014 1411 aa13.67□□□□□ -0.22
VPS29-208ENST00000550267 LMOD3Q0VAK6 560 aa13.67□□□□□ -0.22
VPS29-208ENST00000550267 PRAMEF18Q5VWM3 479 aa13.67□□□□□ -0.22
VPS29-208ENST00000550267 MYOZ2Q9NPC6 264 aa13.67□□□□□ -0.22
VPS29-208ENST00000550267 ANKIB1Q9P2G1 1089 aa13.67□□□□□ -0.22
VPS29-208ENST00000550267 GGA1Q9UJY5 639 aa13.67□□□□□ -0.22
VPS29-208ENST00000550267 LAS1LQ9Y4W2 734 aaKnown RBP13.67□□□□□ -0.22
VPS29-208ENST00000550267 PITPNM2Q9BZ72 1349 aa13.66□□□□□ -0.22
VPS29-208ENST00000550267 GPR25O00155 361 aa13.66□□□□□ -0.22
VPS29-208ENST00000550267 CHL1O00533 1208 aa13.66□□□□□ -0.22
VPS29-208ENST00000550267 USP17L8P0C7I0 530 aa13.66□□□□□ -0.22
VPS29-208ENST00000550267 GMLQ99445 158 aa13.66□□□□□ -0.22
VPS29-208ENST00000550267 COL9A1P20849 921 aa13.65□□□□□ -0.22
VPS29-208ENST00000550267 TRIM28Q13263 835 aaKnown RBP13.65□□□□□ -0.22
VPS29-208ENST00000550267 NEUROD2Q15784 382 aa13.65□□□□□ -0.22
VPS29-208ENST00000550267 PROX2Q3B8N5 592 aa13.65□□□□□ -0.22
VPS29-208ENST00000550267 FBXO46Q6PJ61 603 aaPredicted RBP13.65□□□□□ -0.22
VPS29-208ENST00000550267 DBF4Q9UBU7 674 aaPredicted RBP13.65□□□□□ -0.22
VPS29-208ENST00000550267 PDE4DIPQ5VU43 2346 aa13.64□□□□□ -0.23
VPS29-208ENST00000550267 TM4SF4P48230 202 aa13.64□□□□□ -0.23
VPS29-208ENST00000550267 TTLL12Q14166 644 aaPredicted RBP13.64□□□□□ -0.23
VPS29-208ENST00000550267 NBPF9Q3BBW0 867 aa13.64□□□□□ -0.23
VPS29-208ENST00000550267 CCDC85AQ96PX6 553 aaPredicted RBP13.64□□□□□ -0.23
VPS29-208ENST00000550267 USP17L3A6NCW0 530 aa13.63□□□□□ -0.23
VPS29-208ENST00000550267 USP17L4A6NCW7 530 aa13.63□□□□□ -0.23
VPS29-208ENST00000550267 HOXB7P09629 217 aa13.63□□□□□ -0.23
VPS29-208ENST00000550267 CAMK2BQ13554 666 aa13.63□□□□□ -0.23
VPS29-208ENST00000550267 USP17L1Q7RTZ2 530 aa13.63□□□□□ -0.23
VPS29-208ENST00000550267 ZBTB38Q8NAP3 1195 aaPredicted RBP13.63□□□□□ -0.23
VPS29-208ENST00000550267 JARID2Q92833 1246 aaPredicted RBP13.63□□□□□ -0.23
VPS29-208ENST00000550267 MXD3Q9BW11 206 aa13.63□□□□□ -0.23
VPS29-208ENST00000550267 R3HDMLQ9H3Y0 253 aa13.63□□□□□ -0.23
VPS29-208ENST00000550267 HYPKQ9NX55 129 aa13.63□□□□□ -0.23
VPS29-208ENST00000550267 WTIPA6NIX2 430 aaPredicted RBP13.62□□□□□ -0.23
VPS29-208ENST00000550267 FKTNO75072 461 aa13.62□□□□□ -0.23
VPS29-208ENST00000550267 CCDC152Q4G0S7 254 aa13.62□□□□□ -0.23
VPS29-208ENST00000550267 NOM1Q5C9Z4 860 aaKnown RBP13.62□□□□□ -0.23
VPS29-208ENST00000550267 RIC3Q7Z5B4 369 aa13.62□□□□□ -0.23
VPS29-208ENST00000550267 LAPTM4BQ86VI4 370 aa13.62□□□□□ -0.23
VPS29-208ENST00000550267 CCDC146Q8IYE0 955 aa13.62□□□□□ -0.23
VPS29-208ENST00000550267 ANKK1Q8NFD2 765 aa13.62□□□□□ -0.23
VPS29-208ENST00000550267 PSME4Q14997 1843 aa13.62□□□□□ -0.23
VPS29-208ENST00000550267 XDHP47989 1333 aa13.62□□□□□ -0.23
VPS29-208ENST00000550267 PDE8AO60658 829 aa13.61□□□□□ -0.23
VPS29-208ENST00000550267 ATP2B4P23634 1241 aa13.61□□□□□ -0.23
VPS29-208ENST00000550267 PTPN12Q05209 780 aaKnown RBP13.61□□□□□ -0.23
VPS29-208ENST00000550267 SREBF2Q12772 1141 aa13.61□□□□□ -0.23
VPS29-208ENST00000550267 PRKG1Q13976 671 aa13.61□□□□□ -0.23
VPS29-208ENST00000550267 PODNQ7Z5L7 613 aa13.61□□□□□ -0.23
VPS29-208ENST00000550267 GCC1Q96CN9 775 aa13.61□□□□□ -0.23
VPS29-208ENST00000550267 MYD88Q99836 296 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms