RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 LSG1Q9H089 658 aaKnown RBP18.73■□□□□ 0.59
CUX1-213ENST00000549414 IDEP14735 1019 aa18.73■□□□□ 0.59
CUX1-213ENST00000549414 ERVV-2B6SEH9 535 aa18.72■□□□□ 0.59
CUX1-213ENST00000549414 PUM3Q15397 648 aaKnown RBP18.72■□□□□ 0.59
CUX1-213ENST00000549414 UBXN4Q92575 508 aa18.72■□□□□ 0.59
CUX1-213ENST00000549414 ERCC4Q92889 916 aaPredicted RBP18.72■□□□□ 0.59
CUX1-213ENST00000549414 NPHP4O75161 1426 aaPredicted RBP18.72■□□□□ 0.59
CUX1-213ENST00000549414 TMEM132AQ24JP5 1023 aa18.72■□□□□ 0.59
CUX1-213ENST00000549414 SPTY2D1Q68D10 685 aaPredicted RBP18.72■□□□□ 0.59
CUX1-213ENST00000549414 TMTC2Q8N394 836 aa18.72■□□□□ 0.59
CUX1-213ENST00000549414 PHKBQ93100 1093 aa18.72■□□□□ 0.59
CUX1-213ENST00000549414 CT47A1Q5JQC4 288 aaPredicted RBP18.72■□□□□ 0.59
CUX1-213ENST00000549414 RTCBQ9Y3I0 505 aaKnown RBP18.72■□□□□ 0.59
CUX1-213ENST00000549414 TSPY3P0CV98 308 aa18.71■□□□□ 0.59
CUX1-213ENST00000549414 TSPY8P0CW00 308 aa18.71■□□□□ 0.59
CUX1-213ENST00000549414 WDR78Q5VTH9 848 aa18.71■□□□□ 0.59
CUX1-213ENST00000549414 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.71■□□□□ 0.59
CUX1-213ENST00000549414 E7EWF7 191 aa18.71■□□□□ 0.59
CUX1-213ENST00000549414 SKILP12757 684 aa18.71■□□□□ 0.59
CUX1-213ENST00000549414 PICALMQ13492 652 aa18.71■□□□□ 0.59
CUX1-213ENST00000549414 LEO1Q8WVC0 666 aaPredicted RBP18.71■□□□□ 0.59
CUX1-213ENST00000549414 RUFY1Q96T51 708 aa18.71■□□□□ 0.59
CUX1-213ENST00000549414 TM6SF1Q9BZW5 370 aa18.71■□□□□ 0.59
CUX1-213ENST00000549414 CAVIN2O95810 425 aa18.71■□□□□ 0.59
CUX1-213ENST00000549414 ZNF445P59923 1031 aa18.71■□□□□ 0.59
CUX1-213ENST00000549414 ENOX2Q16206 610 aaKnown RBP18.71■□□□□ 0.59
CUX1-213ENST00000549414 ZNF589Q86UQ0 364 aaPredicted RBP18.71■□□□□ 0.59
CUX1-213ENST00000549414 ZNF532Q9HCE3 1301 aa18.7■□□□□ 0.58
CUX1-213ENST00000549414 UBASH3AP57075 661 aa18.7■□□□□ 0.58
CUX1-213ENST00000549414 CTDSPL2Q05D32 466 aa18.7■□□□□ 0.58
CUX1-213ENST00000549414 TRMT1LQ7Z2T5 733 aaKnown RBP18.7■□□□□ 0.58
CUX1-213ENST00000549414 DHX58Q96C10 678 aa18.7■□□□□ 0.58
CUX1-213ENST00000549414 COPRSQ9NQ92 184 aa18.7■□□□□ 0.58
CUX1-213ENST00000549414 GPT2Q8TD30 523 aa18.7■□□□□ 0.58
CUX1-213ENST00000549414 SKIDA1Q1XH10 827 aa18.7■□□□□ 0.58
CUX1-213ENST00000549414 HEATR3Q7Z4Q2 680 aa18.7■□□□□ 0.58
CUX1-213ENST00000549414 C17orf53Q8N3J3 647 aaPredicted RBP18.7■□□□□ 0.58
CUX1-213ENST00000549414 CNKSR2Q8WXI2 1034 aa18.7■□□□□ 0.58
CUX1-213ENST00000549414 RRP9O43818 475 aaKnown RBP18.69■□□□□ 0.58
CUX1-213ENST00000549414 ADORA1P30542 326 aa18.69■□□□□ 0.58
CUX1-213ENST00000549414 ANGEL1Q9UNK9 670 aaKnown RBP18.69■□□□□ 0.58
CUX1-213ENST00000549414 TTLL12Q14166 644 aaPredicted RBP18.69■□□□□ 0.58
CUX1-213ENST00000549414 ZSWIM6Q9HCJ5 1215 aa18.69■□□□□ 0.58
CUX1-213ENST00000549414 CCDC87Q9NVE4 849 aa18.69■□□□□ 0.58
CUX1-213ENST00000549414 SASH1O94885 1247 aa18.69■□□□□ 0.58
CUX1-213ENST00000549414 KIAA1328Q86T90 577 aa18.69■□□□□ 0.58
CUX1-213ENST00000549414 IBSPP21815 317 aaPredicted RBP18.68■□□□□ 0.58
CUX1-213ENST00000549414 CHMP4BP1P59074 171 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 MTMR6Q9Y217 621 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 INO80Q9ULG1 1556 aaPredicted RBP18.68■□□□□ 0.58
CUX1-213ENST00000549414 SETBP1Q9Y6X0 1596 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 TRIM75PA6NK02 468 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 GSDMDP57764 484 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 NUP88Q99567 741 aaPredicted RBP18.68■□□□□ 0.58
CUX1-213ENST00000549414 UBA5Q9GZZ9 404 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 PTPRMP28827 1452 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 LMTK2Q8IWU2 1503 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 ARHGEF40Q8TER5 1519 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 hCG_1642624A0A1W2PR95 340 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 SPECC1Q5M775 1068 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 ZFYVE27Q5T4F4 411 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 TCP11L1Q9NUJ3 509 aa18.68■□□□□ 0.58
CUX1-213ENST00000549414 STX17P56962 302 aa18.67■□□□□ 0.58
CUX1-213ENST00000549414 CBX1P83916 185 aa18.67■□□□□ 0.58
CUX1-213ENST00000549414 LPIN2Q92539 896 aa18.67■□□□□ 0.58
CUX1-213ENST00000549414 CPSF1Q10570 1443 aaKnown RBP18.67■□□□□ 0.58
CUX1-213ENST00000549414 HSPD1P10809 573 aaKnown RBP18.67■□□□□ 0.58
CUX1-213ENST00000549414 GNAT2P19087 354 aa18.67■□□□□ 0.58
CUX1-213ENST00000549414 HAUS7Q99871 368 aa18.67■□□□□ 0.58
CUX1-213ENST00000549414 CYP27B1O15528 508 aa18.67■□□□□ 0.58
CUX1-213ENST00000549414 ZSCAN12O43309 604 aa18.67■□□□□ 0.58
CUX1-213ENST00000549414 HMGB2P26583 209 aaKnown RBP18.67■□□□□ 0.58
CUX1-213ENST00000549414 SLF2Q8IX21 1173 aa18.67■□□□□ 0.58
CUX1-213ENST00000549414 GREM2Q9H772 168 aa18.67■□□□□ 0.58
CUX1-213ENST00000549414 SSH2Q76I76 1423 aa18.67■□□□□ 0.58
CUX1-213ENST00000549414 EPHA10Q5JZY3 1008 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 PI16Q6UXB8 463 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 PAXIP1Q6ZW49 1069 aaPredicted RBP18.66■□□□□ 0.58
CUX1-213ENST00000549414 KIF4BQ2VIQ3 1234 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 CABP5Q9NP86 173 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 PRDM10Q9NQV6 1147 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 ZBTB1Q9Y2K1 713 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 RIMBP2O15034 1052 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 LIG1P18858 919 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 ST5P78524 1137 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 BRAPQ7Z569 592 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 PI4K2BQ8TCG2 481 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 MAP4K1Q92918 833 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 GTF3C6Q969F1 213 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 ACBD3Q9H3P7 528 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 NEMFO60524 1076 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 SNW1Q13573 536 aaKnown RBP18.66■□□□□ 0.58
CUX1-213ENST00000549414 ZSWIM4Q9H7M6 989 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.66■□□□□ 0.585e-7■■□□□ 11.9
CUX1-213ENST00000549414 IFNKQ9P0W0 207 aa18.66■□□□□ 0.58
CUX1-213ENST00000549414 CTSWP56202 376 aa18.65■□□□□ 0.58
CUX1-213ENST00000549414 FAM160A1Q05DH4 1040 aa18.65■□□□□ 0.58
CUX1-213ENST00000549414 PARP10Q53GL7 1025 aa18.65■□□□□ 0.58
CUX1-213ENST00000549414 SPATA5Q8NB90 893 aa18.65■□□□□ 0.58
CUX1-213ENST00000549414 N4BP3O15049 544 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms