RNA–Protein interactions for RNA: ENST00000549400.1

PTPRB-207, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 4

Gene PTPRB, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-207ENST00000549400 ZRANB2O95218 330 aaKnown RBP eCLIP4.68□□□□□ -1.66
PTPRB-207ENST00000549400 ADH1CP00326 375 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 U2AF1L5P0DN76 240 aaPredicted RBP4.68□□□□□ -1.66
PTPRB-207ENST00000549400 U2AF1Q01081 240 aaKnown RBP eCLIP4.68□□□□□ -1.66
PTPRB-207ENST00000549400 MAP2K5Q13163 448 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 SAFB2Q14151 953 aaKnown RBP eCLIP4.68□□□□□ -1.66
PTPRB-207ENST00000549400 NFKBIBQ15653 356 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 ZRSR2Q15696 482 aaKnown RBP4.68□□□□□ -1.66
PTPRB-207ENST00000549400 PTPROQ16827 1216 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 NPAS4Q8IUM7 802 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 SVOPQ8N4V2 548 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 BAP1Q92560 729 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 SCYL1Q96KG9 808 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 NCAPGQ9BPX3 1015 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 BRINP2Q9C0B6 783 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 LNPKQ9C0E8 428 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 ESF1Q9H501 851 aaKnown RBP4.68□□□□□ -1.66
PTPRB-207ENST00000549400 IFT57Q9NWB7 429 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 FBXO9Q9UK97 447 aaPredicted RBP4.68□□□□□ -1.66
PTPRB-207ENST00000549400 COG6Q9Y2V7 657 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 KIF3AQ9Y496 699 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 ADGRL3Q9HAR2 1447 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 DLG5Q8TDM6 1919 aa4.68□□□□□ -1.66
PTPRB-207ENST00000549400 SLIT3O75094 1523 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 SBNO1A3KN83 1393 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 FLT4P35916 1363 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 KIAA0232Q92628 1395 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 SENP3-EIF4A1A0A087X0R7 540 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 MPHOSPH10O00566 681 aaKnown RBP4.67□□□□□ -1.66
PTPRB-207ENST00000549400 UPP2O95045 317 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 FAM200BP0CF97 657 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 BMP2P12643 396 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 VARSP26640 1264 aaKnown RBP4.67□□□□□ -1.66
PTPRB-207ENST00000549400 FOXK2Q01167 660 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 GUCA2AQ02747 115 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 MLECQ14165 292 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 SF3A1Q15459 793 aaKnown RBP4.67□□□□□ -1.66
PTPRB-207ENST00000549400 NFE2L2Q16236 605 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 C8orf34Q49A92 452 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.67□□□□□ -1.66
PTPRB-207ENST00000549400 RETREG3Q86VR2 466 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 NME9Q86XW9 330 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 GPR161Q8N6U8 529 aaKnown RBP4.67□□□□□ -1.66
PTPRB-207ENST00000549400 ATL2Q8NHH9 583 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 SNRNP27Q8WVK2 155 aaKnown RBP4.67□□□□□ -1.66
PTPRB-207ENST00000549400 ARHGAP45Q92619 1136 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 COG3Q96JB2 828 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 TIGD1Q96MW7 591 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 DONSONQ9NYP3 566 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 PPP1R1BQ9UD71 204 aaPredicted RBP4.67□□□□□ -1.66
PTPRB-207ENST00000549400 ANAPC4Q9UJX5 808 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 EID1Q9Y6B2 187 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 N4BP2Q86UW6 1770 aaPredicted RBP4.67□□□□□ -1.66
PTPRB-207ENST00000549400 ACEP12821 1306 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 IGSF1Q8N6C5 1336 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 KIF16BQ96L93 1317 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 MAPK8IP3Q9UPT6 1336 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 LMO7Q8WWI1 1683 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 ADAMTS7Q9UKP4 1686 aa4.67□□□□□ -1.66
PTPRB-207ENST00000549400 RGS12O14924 1447 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 DCCP43146 1447 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 CRB1P82279 1406 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 NCOA3Q9Y6Q9 1424 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 OFD1O75665 1012 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 RLBP1P12271 317 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 TNNT3P45378 269 aaPredicted RBP4.66□□□□□ -1.66
PTPRB-207ENST00000549400 KCNJ4P48050 445 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 KRT76Q01546 638 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 MVPQ14764 893 aaKnown RBP4.66□□□□□ -1.66
PTPRB-207ENST00000549400 ARID5BQ14865 1188 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 UVSSAQ2YD98 709 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 KIAA1211Q6ZU35 1233 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 PCGF5Q86SE9 256 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 RPUSD2Q8IZ73 545 aaKnown RBP4.66□□□□□ -1.66
PTPRB-207ENST00000549400 PMFBP1Q8TBY8 1022 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 BORCS6Q96GS4 357 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 UNC93B1Q9H1C4 597 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 SUDS3Q9H7L9 328 aaPredicted RBP4.66□□□□□ -1.66
PTPRB-207ENST00000549400 BRMS1Q9HCU9 246 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 CGNQ9P2M7 1197 aaKnown RBP4.66□□□□□ -1.66
PTPRB-207ENST00000549400 EMILIN1Q9Y6C2 1016 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 ABCC4O15439 1325 aa4.66□□□□□ -1.66
PTPRB-207ENST00000549400 TRPM3Q9HCF6 1732 aaPredicted RBP4.66□□□□□ -1.66
PTPRB-207ENST00000549400 OVOS2A0A0G2JMS6 1433 aa4.65□□□□□ -1.66
PTPRB-207ENST00000549400 KIF1AQ12756 1690 aa4.65□□□□□ -1.66
PTPRB-207ENST00000549400 TMEM88BA6NKF7 163 aa4.65□□□□□ -1.67
PTPRB-207ENST00000549400 CTAGE5O15320 804 aa4.65□□□□□ -1.67
PTPRB-207ENST00000549400 IPO8O15397 1037 aaKnown RBP4.65□□□□□ -1.67
PTPRB-207ENST00000549400 WDHD1O75717 1129 aaPredicted RBP4.65□□□□□ -1.67
PTPRB-207ENST00000549400 ZIC2O95409 532 aaPredicted RBP4.65□□□□□ -1.67
PTPRB-207ENST00000549400 RECKO95980 971 aa4.65□□□□□ -1.67
PTPRB-207ENST00000549400 CCNYL3P0C7X3 344 aa4.65□□□□□ -1.67
PTPRB-207ENST00000549400 TRIM27P14373 513 aa4.65□□□□□ -1.67
PTPRB-207ENST00000549400 PRKAR2BP31323 418 aa4.65□□□□□ -1.67
PTPRB-207ENST00000549400 GTF2A1P52655 376 aaPredicted RBP4.65□□□□□ -1.67
PTPRB-207ENST00000549400 RIPK4P57078 832 aa4.65□□□□□ -1.67
PTPRB-207ENST00000549400 IGBP1P78318 339 aa4.65□□□□□ -1.67
PTPRB-207ENST00000549400 MDM2Q00987 491 aaPredicted RBP4.65□□□□□ -1.67
PTPRB-207ENST00000549400 EXOSC9Q06265 439 aaKnown RBP4.65□□□□□ -1.67
PTPRB-207ENST00000549400 EIF4A2Q14240 407 aaKnown RBP4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms