RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 NLRP12P59046 1061 aa7.37□□□□□ -1.23
VPS29-205ENST00000548539 FKBP5Q13451 457 aaPredicted RBP7.37□□□□□ -1.23
VPS29-205ENST00000548539 CPSF6Q16630 551 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS29-205ENST00000548539 POP1Q99575 1024 aaKnown RBP7.37□□□□□ -1.23
VPS29-205ENST00000548539 JUNBP17275 347 aaPredicted RBP7.36□□□□□ -1.23
VPS29-205ENST00000548539 SGO2Q562F6 1265 aa7.36□□□□□ -1.23
VPS29-205ENST00000548539 C16orf46Q6P387 395 aa7.36□□□□□ -1.23
VPS29-205ENST00000548539 VSIG10LQ86VR7 867 aa7.36□□□□□ -1.23
VPS29-205ENST00000548539 CEP120Q8N960 986 aa7.36□□□□□ -1.23
VPS29-205ENST00000548539 SAP130Q9H0E3 1048 aa7.36□□□□□ -1.23
VPS29-205ENST00000548539 ABI2Q9NYB9 513 aaPredicted RBP7.36□□□□□ -1.23
VPS29-205ENST00000548539 ELOAQ14241 798 aaKnown RBP7.35□□□□□ -1.23
VPS29-205ENST00000548539 SLC7A3Q8WY07 619 aa7.35□□□□□ -1.23
VPS29-205ENST00000548539 MEGF11A6BM72 1044 aa7.34□□□□□ -1.23
VPS29-205ENST00000548539 BRD1O95696 1058 aa7.34□□□□□ -1.23
VPS29-205ENST00000548539 CYP2E1P05181 493 aaPredicted RBP7.34□□□□□ -1.23
VPS29-205ENST00000548539 ITGB5P18084 799 aa7.34□□□□□ -1.23
VPS29-205ENST00000548539 ARL4DP49703 201 aa7.34□□□□□ -1.23
VPS29-205ENST00000548539 NUTM2GQ5VZR2 741 aa7.34□□□□□ -1.23
VPS29-205ENST00000548539 C12orf50Q8NA57 414 aaPredicted RBP7.34□□□□□ -1.23
VPS29-205ENST00000548539 PRIMPOLQ96LW4 560 aa7.34□□□□□ -1.23
VPS29-205ENST00000548539 METTL22Q9BUU2 404 aaPredicted RBP7.34□□□□□ -1.23
VPS29-205ENST00000548539 GZF1Q9H116 711 aaPredicted RBP7.34□□□□□ -1.23
VPS29-205ENST00000548539 NFKBIBQ15653 356 aa7.33□□□□□ -1.24
VPS29-205ENST00000548539 BSDC1Q9NW68 430 aaPredicted RBP7.33□□□□□ -1.24
VPS29-205ENST00000548539 FAM95CA0A1B0GW59 222 aa7.32□□□□□ -1.24
VPS29-205ENST00000548539 CYP26A1O43174 497 aa7.32□□□□□ -1.24
VPS29-205ENST00000548539 ZAP70P43403 619 aa7.32□□□□□ -1.24
VPS29-205ENST00000548539 FAM26DQ5JW98 314 aa7.32□□□□□ -1.24
VPS29-205ENST00000548539 PAOXQ6QHF9 649 aa7.32□□□□□ -1.24
VPS29-205ENST00000548539 NFXL1Q6ZNB6 911 aa7.32□□□□□ -1.24
VPS29-205ENST00000548539 AGBL5Q8NDL9 886 aa7.32□□□□□ -1.24
VPS29-205ENST00000548539 GPR152Q8TDT2 470 aa7.32□□□□□ -1.24
VPS29-205ENST00000548539 USP11P51784 963 aa7.31□□□□□ -1.24
VPS29-205ENST00000548539 KCNA1Q09470 495 aa7.31□□□□□ -1.24
VPS29-205ENST00000548539 CYP4F12Q9HCS2 524 aa7.31□□□□□ -1.24
VPS29-205ENST00000548539 PRMT3O60678 531 aa7.3□□□□□ -1.24
VPS29-205ENST00000548539 C19orf57Q0VDD7 668 aa7.3□□□□□ -1.24
VPS29-205ENST00000548539 FLCNQ8NFG4 579 aa7.3□□□□□ -1.24
VPS29-205ENST00000548539 SLAIN2Q9P270 581 aa7.3□□□□□ -1.24
VPS29-205ENST00000548539 IVNS1ABPQ9Y6Y0 642 aa7.3□□□□□ -1.24
VPS29-205ENST00000548539 TNFRSF10BO14763 440 aa7.29□□□□□ -1.24
VPS29-205ENST00000548539 FAM69CQ0P6D2 419 aa7.29□□□□□ -1.24
VPS29-205ENST00000548539 COL19A1Q14993 1142 aa7.29□□□□□ -1.24
VPS29-205ENST00000548539 SHISA5Q8N114 240 aa7.29□□□□□ -1.24
VPS29-205ENST00000548539 SMG8Q8ND04 991 aaKnown RBP7.29□□□□□ -1.24
VPS29-205ENST00000548539 TBC1D32Q96NH3 1257 aa7.29□□□□□ -1.24
VPS29-205ENST00000548539 ELP3Q9H9T3 547 aa7.29□□□□□ -1.24
VPS29-205ENST00000548539 CCDC9Q9Y3X0 531 aaKnown RBP7.29□□□□□ -1.24
VPS29-205ENST00000548539 PDE2AO00408 941 aaPredicted RBP7.28□□□□□ -1.24
VPS29-205ENST00000548539 SWI5Q1ZZU3 235 aa7.28□□□□□ -1.24
VPS29-205ENST00000548539 PDE12Q6L8Q7 609 aaKnown RBP7.28□□□□□ -1.24
VPS29-205ENST00000548539 TMPRSS13Q9BYE2 586 aa7.28□□□□□ -1.24
VPS29-205ENST00000548539 SUGCTQ9HAC7 445 aa7.28□□□□□ -1.24
VPS29-205ENST00000548539 KANSL3Q9P2N6 904 aa7.28□□□□□ -1.24
VPS29-205ENST00000548539 PATL2C9JE40 543 aaKnown RBP7.27□□□□□ -1.25
VPS29-205ENST00000548539 TIAF1O95411 115 aa7.27□□□□□ -1.25
VPS29-205ENST00000548539 NAA30Q147X3 362 aaPredicted RBP7.27□□□□□ -1.25
VPS29-205ENST00000548539 TMCO4Q5TGY1 634 aa7.27□□□□□ -1.25
VPS29-205ENST00000548539 HGSNATQ68CP4 663 aa7.27□□□□□ -1.25
VPS29-205ENST00000548539 FBLIM1Q8WUP2 373 aa7.27□□□□□ -1.25
VPS29-205ENST00000548539 PAK6Q9NQU5 681 aaPredicted RBP7.27□□□□□ -1.25
VPS29-205ENST00000548539 TMEM63CQ9P1W3 806 aa7.27□□□□□ -1.25
VPS29-205ENST00000548539 SALL4Q9UJQ4 1053 aa7.27□□□□□ -1.25
VPS29-205ENST00000548539 NFKBIEO00221 500 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 DRD2P14416 443 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 ADMP35318 185 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 OCLNQ16625 522 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 ZNF648Q5T619 568 aaPredicted RBP7.26□□□□□ -1.25
VPS29-205ENST00000548539 LCE4AQ5TA78 99 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 B4GALNT3Q6L9W6 998 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 PHLDB3Q6NSJ2 640 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 CDPF1Q6NVV7 123 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 ZNF438Q7Z4V0 828 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 ZAR1Q86SH2 424 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 CLP1Q92989 425 aaKnown RBP7.26□□□□□ -1.25
VPS29-205ENST00000548539 MKNK1Q9BUB5 465 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 YIPF2Q9BWQ6 316 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 USP26Q9BXU7 913 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 DZANK1Q9NVP4 752 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 STIM2Q9P246 746 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 SOX13Q9UN79 622 aa7.26□□□□□ -1.25
VPS29-205ENST00000548539 ACPPP15309 386 aa7.25□□□□□ -1.25
VPS29-205ENST00000548539 CES1P23141 567 aa7.25□□□□□ -1.25
VPS29-205ENST00000548539 ATP2B4P23634 1241 aa7.25□□□□□ -1.25
VPS29-205ENST00000548539 IKBKEQ14164 716 aa7.25□□□□□ -1.25
VPS29-205ENST00000548539 EXOSC6Q5RKV6 272 aaKnown RBP7.25□□□□□ -1.25
VPS29-205ENST00000548539 DUSP27Q5VZP5 1158 aa7.25□□□□□ -1.25
VPS29-205ENST00000548539 CNTN3Q9P232 1028 aa7.25□□□□□ -1.25
VPS29-205ENST00000548539 PRKAG2Q9UGJ0 569 aa7.25□□□□□ -1.25
VPS29-205ENST00000548539 FAM170BA6NMN3 283 aa7.24□□□□□ -1.25
VPS29-205ENST00000548539 DBX1A6NMT0 343 aa7.24□□□□□ -1.25
VPS29-205ENST00000548539 BIN1O00499 593 aa7.24□□□□□ -1.25
VPS29-205ENST00000548539 SOX1O00570 391 aaPredicted RBP7.24□□□□□ -1.25
VPS29-205ENST00000548539 ZBTB39O15060 712 aa7.24□□□□□ -1.25
VPS29-205ENST00000548539 TRPA1O75762 1119 aa7.24□□□□□ -1.25
VPS29-205ENST00000548539 SSFA2P28290 1259 aa7.24□□□□□ -1.25
VPS29-205ENST00000548539 ZNF124Q15973 351 aa7.24□□□□□ -1.25
VPS29-205ENST00000548539 FBLN7Q53RD9 439 aa7.24□□□□□ -1.25
VPS29-205ENST00000548539 CAPN12Q6ZSI9 719 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms