RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 CSRNP1Q96S65 589 aa16.84■□□□□ 0.29
CPSF6-204ENST00000547486 USP44Q9H0E7 712 aa16.84■□□□□ 0.29
CPSF6-204ENST00000547486 HDAC9Q9UKV0 1011 aa16.84■□□□□ 0.29
CPSF6-204ENST00000547486 F8W031 263 aaPredicted RBP16.83■□□□□ 0.28
CPSF6-204ENST00000547486 GYG1P46976 350 aa16.83■□□□□ 0.28
CPSF6-204ENST00000547486 LRRC24Q50LG9 513 aa16.83■□□□□ 0.28
CPSF6-204ENST00000547486 RASAL3Q86YV0 1011 aa16.83■□□□□ 0.28
CPSF6-204ENST00000547486 ABHD8Q96I13 439 aa16.83■□□□□ 0.28
CPSF6-204ENST00000547486 AOX1Q06278 1338 aa16.82■□□□□ 0.28
CPSF6-204ENST00000547486 UBE4AQ14139 1066 aa16.82■□□□□ 0.28
CPSF6-204ENST00000547486 DLGAP5Q15398 846 aa16.82■□□□□ 0.28
CPSF6-204ENST00000547486 TDRD7Q8NHU6 1098 aaKnown RBP16.82■□□□□ 0.28
CPSF6-204ENST00000547486 KLHDC4Q8TBB5 520 aa16.82■□□□□ 0.28
CPSF6-204ENST00000547486 FAM84BQ96KN1 310 aaPredicted RBP16.82■□□□□ 0.28
CPSF6-204ENST00000547486 FKBP1AP62942 108 aaKnown RBP16.81■□□□□ 0.28
CPSF6-204ENST00000547486 ALDH1L2Q3SY69 923 aa16.81■□□□□ 0.28
CPSF6-204ENST00000547486 MTMR14Q8NCE2 650 aa16.81■□□□□ 0.28
CPSF6-204ENST00000547486 PRMT6Q96LA8 375 aaPredicted RBP16.81■□□□□ 0.28
CPSF6-204ENST00000547486 RNF186Q9NXI6 227 aa16.81■□□□□ 0.28
CPSF6-204ENST00000547486 CCER2I3L3R5 266 aa16.8■□□□□ 0.28
CPSF6-204ENST00000547486 TRPA1O75762 1119 aa16.8■□□□□ 0.28
CPSF6-204ENST00000547486 HIBADHP31937 336 aaKnown RBP16.8■□□□□ 0.28
CPSF6-204ENST00000547486 CFAP100Q494V2 611 aa16.8■□□□□ 0.28
CPSF6-204ENST00000547486 APOBEC3FQ8IUX4 373 aaKnown RBP16.8■□□□□ 0.28
CPSF6-204ENST00000547486 FAM205AQ6ZU69 1335 aa16.79■□□□□ 0.28
CPSF6-204ENST00000547486 MROH5Q6ZUA9 1318 aa16.79■□□□□ 0.28
CPSF6-204ENST00000547486 PRKG1Q13976 671 aa16.79■□□□□ 0.28
CPSF6-204ENST00000547486 TTLL12Q14166 644 aaPredicted RBP16.79■□□□□ 0.28
CPSF6-204ENST00000547486 VGLL2Q8N8G2 317 aa16.79■□□□□ 0.28
CPSF6-204ENST00000547486 DEFB129Q9H1M3 183 aa16.79■□□□□ 0.28
CPSF6-204ENST00000547486 SMC4Q9NTJ3 1288 aa16.79■□□□□ 0.28
CPSF6-204ENST00000547486 NOB1Q9ULX3 412 aaKnown RBP16.79■□□□□ 0.28
CPSF6-204ENST00000547486 FZD1Q9UP38 647 aa16.79■□□□□ 0.28
CPSF6-204ENST00000547486 CLRN2A0PK11 232 aa16.78■□□□□ 0.28
CPSF6-204ENST00000547486 SPDYE2BA6NHP3 402 aa16.78■□□□□ 0.28
CPSF6-204ENST00000547486 SPDYE6P0CI01 402 aa16.78■□□□□ 0.28
CPSF6-204ENST00000547486 PTPN12Q05209 780 aaKnown RBP16.78■□□□□ 0.28
CPSF6-204ENST00000547486 FBXO33Q7Z6M2 555 aa16.78■□□□□ 0.28
CPSF6-204ENST00000547486 SAGE1Q9NXZ1 904 aa16.78■□□□□ 0.28
CPSF6-204ENST00000547486 A0A1B0GUL6 1792 aa16.77■□□□□ 0.28
CPSF6-204ENST00000547486 PAPPA2Q9BXP8 1791 aa16.77■□□□□ 0.28
CPSF6-204ENST00000547486 PDE8BO95263 885 aa16.77■□□□□ 0.28
CPSF6-204ENST00000547486 NF2P35240 595 aa16.77■□□□□ 0.28
CPSF6-204ENST00000547486 RFX5P48382 616 aaPredicted RBP16.77■□□□□ 0.28
CPSF6-204ENST00000547486 GRIK5Q16478 980 aa16.77■□□□□ 0.28
CPSF6-204ENST00000547486 METTL24Q5JXM2 366 aa16.77■□□□□ 0.28
CPSF6-204ENST00000547486 MFSD14BQ5SR56 506 aa16.77■□□□□ 0.28
CPSF6-204ENST00000547486 IQSEC3Q9UPP2 1182 aaPredicted RBP16.77■□□□□ 0.28
CPSF6-204ENST00000547486 MKRN3Q13064 507 aaKnown RBP16.76■□□□□ 0.27
CPSF6-204ENST00000547486 LDLRAD1Q5T700 205 aa16.76■□□□□ 0.27
CPSF6-204ENST00000547486 MCOLN1Q9GZU1 580 aa16.76■□□□□ 0.27
CPSF6-204ENST00000547486 BCAMP50895 628 aa16.75■□□□□ 0.27
CPSF6-204ENST00000547486 RBM5P52756 815 aaKnown RBP eCLIP16.75■□□□□ 0.27
CPSF6-204ENST00000547486 ARMC9Q7Z3E5 817 aa16.75■□□□□ 0.27
CPSF6-204ENST00000547486 REM2Q8IYK8 340 aaPredicted RBP16.75■□□□□ 0.27
CPSF6-204ENST00000547486 ANGEL1Q9UNK9 670 aaKnown RBP16.75■□□□□ 0.27
CPSF6-204ENST00000547486 TTF2Q9UNY4 1162 aaKnown RBP16.75■□□□□ 0.27
CPSF6-204ENST00000547486 CT47B1P0C2W7 299 aaPredicted RBP16.74■□□□□ 0.27
CPSF6-204ENST00000547486 FGFR2P21802 821 aa16.74■□□□□ 0.27
CPSF6-204ENST00000547486 TM4SF4P48230 202 aa16.74■□□□□ 0.27
CPSF6-204ENST00000547486 DGKZQ13574 1117 aa16.74■□□□□ 0.27
CPSF6-204ENST00000547486 NBPF12Q5TAG4 269 aaPredicted RBP16.74■□□□□ 0.27
CPSF6-204ENST00000547486 VEZTQ9HBM0 779 aa16.74■□□□□ 0.27
CPSF6-204ENST00000547486 CASP8AP2Q9UKL3 1982 aa16.73■□□□□ 0.27
CPSF6-204ENST00000547486 CCDC85CA6NKD9 419 aa16.73■□□□□ 0.27
CPSF6-204ENST00000547486 EYA2O00167 538 aa16.73■□□□□ 0.27
CPSF6-204ENST00000547486 MYO1BO43795 1136 aa16.73■□□□□ 0.27
CPSF6-204ENST00000547486 RARSP54136 660 aaKnown RBP16.73■□□□□ 0.27
CPSF6-204ENST00000547486 CHAF1AQ13111 956 aaPredicted RBP16.73■□□□□ 0.27
CPSF6-204ENST00000547486 RASA3Q14644 834 aa16.73■□□□□ 0.27
CPSF6-204ENST00000547486 CAVIN4Q5BKX8 364 aa16.73■□□□□ 0.27
CPSF6-204ENST00000547486 ATG9AQ7Z3C6 839 aa16.73■□□□□ 0.27
CPSF6-204ENST00000547486 VPS37DQ86XT2 251 aa16.73■□□□□ 0.27
CPSF6-204ENST00000547486 TDRD3Q9H7E2 651 aaKnown RBP16.73■□□□□ 0.27
CPSF6-204ENST00000547486 SERPINA10Q9UK55 444 aa16.73■□□□□ 0.27
CPSF6-204ENST00000547486 CRKP46108 304 aa16.72■□□□□ 0.27
CPSF6-204ENST00000547486 MAP3K11Q16584 847 aa16.72■□□□□ 0.27
CPSF6-204ENST00000547486 DZIP1LQ8IYY4 767 aaKnown RBP16.72■□□□□ 0.27
CPSF6-204ENST00000547486 ZNF70Q9UC06 446 aaPredicted RBP16.72■□□□□ 0.27
CPSF6-204ENST00000547486 PPP2R3BQ9Y5P8 575 aa16.72■□□□□ 0.27
CPSF6-204ENST00000547486 SSC5DA1L4H1 1573 aa16.72■□□□□ 0.27
CPSF6-204ENST00000547486 TBC1D8O95759 1140 aa16.71■□□□□ 0.27
CPSF6-204ENST00000547486 UBTFL1P0CB47 393 aaPredicted RBP16.71■□□□□ 0.27
CPSF6-204ENST00000547486 PUM3Q15397 648 aaKnown RBP16.71■□□□□ 0.27
CPSF6-204ENST00000547486 SPDYE2Q495Y8 402 aa16.71■□□□□ 0.27
CPSF6-204ENST00000547486 SPRYD7Q5W111 196 aa16.71■□□□□ 0.27
CPSF6-204ENST00000547486 CLMNQ96JQ2 1002 aa16.71■□□□□ 0.27
CPSF6-204ENST00000547486 API5Q9BZZ5 524 aaKnown RBP16.71■□□□□ 0.27
CPSF6-204ENST00000547486 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.71■□□□□ 0.27
CPSF6-204ENST00000547486 COL1A1P02452 1464 aaPredicted RBP16.71■□□□□ 0.27
CPSF6-204ENST00000547486 USP2O75604 605 aaPredicted RBP16.7■□□□□ 0.26
CPSF6-204ENST00000547486 SUPT20HL1Q3ZLR7 823 aa16.7■□□□□ 0.26
CPSF6-204ENST00000547486 CDAN1Q8IWY9 1227 aa16.7■□□□□ 0.26
CPSF6-204ENST00000547486 SLC10A4Q96EP9 437 aa16.7■□□□□ 0.26
CPSF6-204ENST00000547486 PPP1R12BO60237 982 aaPredicted RBP16.69■□□□□ 0.26
CPSF6-204ENST00000547486 FRAT2O75474 233 aaPredicted RBP16.69■□□□□ 0.26
CPSF6-204ENST00000547486 IFIT1P09914 478 aaKnown RBP16.69■□□□□ 0.26
CPSF6-204ENST00000547486 TEPSINQ96N21 525 aa16.69■□□□□ 0.26
CPSF6-204ENST00000547486 MEIS3Q99687 375 aa16.69■□□□□ 0.26
CPSF6-204ENST00000547486 SIL1Q9H173 461 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms