RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 RABEP2Q9H5N1 569 aa17.04■□□□□ 0.32
HOXC11-202ENST00000546378 TULP1O00294 542 aaPredicted RBP17.04■□□□□ 0.32
HOXC11-202ENST00000546378 TNNT3P45378 269 aaPredicted RBP17.04■□□□□ 0.32
HOXC11-202ENST00000546378 FKBP15Q5T1M5 1219 aa17.04■□□□□ 0.32
HOXC11-202ENST00000546378 RGPD2P0DJD1 1756 aa17.03■□□□□ 0.32
HOXC11-202ENST00000546378 SLIT3O75094 1523 aa17.03■□□□□ 0.32
HOXC11-202ENST00000546378 ERC1Q8IUD2 1116 aa17.03■□□□□ 0.32
HOXC11-202ENST00000546378 C8orf76Q96K31 380 aa17.03■□□□□ 0.32
HOXC11-202ENST00000546378 KLF18A0A0U1RQI7 1052 aa17.03■□□□□ 0.32
HOXC11-202ENST00000546378 hCG_1642624A0A1W2PR95 340 aa17.03■□□□□ 0.32
HOXC11-202ENST00000546378 CARD10Q9BWT7 1032 aa17.03■□□□□ 0.32
HOXC11-202ENST00000546378 GTPBP4Q9BZE4 634 aaKnown RBP17.03■□□□□ 0.32
HOXC11-202ENST00000546378 ORC3Q9UBD5 711 aaPredicted RBP17.03■□□□□ 0.32
HOXC11-202ENST00000546378 PCDHA7Q9UN72 937 aa17.03■□□□□ 0.32
HOXC11-202ENST00000546378 SLC3A2P08195 630 aaKnown RBP17.02■□□□□ 0.32
HOXC11-202ENST00000546378 STX17P56962 302 aa17.02■□□□□ 0.32
HOXC11-202ENST00000546378 DHX37Q8IY37 1157 aaKnown RBP17.02■□□□□ 0.32
HOXC11-202ENST00000546378 ANO10Q9NW15 660 aa17.02■□□□□ 0.32
HOXC11-202ENST00000546378 TTC41PQ6P2S7 1318 aa17.02■□□□□ 0.32
HOXC11-202ENST00000546378 NRDCO43847 1150 aa17.02■□□□□ 0.32
HOXC11-202ENST00000546378 ACSBG1Q96GR2 724 aa17.02■□□□□ 0.32
HOXC11-202ENST00000546378 NGLY1Q96IV0 654 aa17.02■□□□□ 0.32
HOXC11-202ENST00000546378 NOL10Q9BSC4 688 aaKnown RBP17.02■□□□□ 0.32
HOXC11-202ENST00000546378 PUF60Q9UHX1 559 aaKnown RBP17.02■□□□□ 0.32
HOXC11-202ENST00000546378 MARF1Q9Y4F3 1742 aaKnown RBP17.02■□□□□ 0.31
HOXC11-202ENST00000546378 SLU7O95391 586 aaKnown RBP17.02■□□□□ 0.31
HOXC11-202ENST00000546378 ADKP55263 362 aaKnown RBP17.02■□□□□ 0.31
HOXC11-202ENST00000546378 STAMQ92783 540 aa17.02■□□□□ 0.31
HOXC11-202ENST00000546378 EEF2KMTQ96G04 330 aa17.02■□□□□ 0.31
HOXC11-202ENST00000546378 KAZALD1Q96I82 304 aa17.02■□□□□ 0.31
HOXC11-202ENST00000546378 GDAP1L1Q96MZ0 367 aa17.02■□□□□ 0.31
HOXC11-202ENST00000546378 ZKSCAN3Q9BRR0 538 aa17.02■□□□□ 0.31
HOXC11-202ENST00000546378 LZTFL1Q9NQ48 299 aa17.02■□□□□ 0.31
HOXC11-202ENST00000546378 RGPD1P0DJD0 1748 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 KIF1AQ12756 1690 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 TFRCP02786 760 aaKnown RBP17.01■□□□□ 0.31
HOXC11-202ENST00000546378 ADCY9O60503 1353 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 GNG11P61952 73 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 RESTQ13127 1097 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 PNOCQ13519 176 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 MCM6Q14566 821 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 RALYLQ86SE5 291 aaKnown RBP17.01■□□□□ 0.31
HOXC11-202ENST00000546378 EXOC5O00471 708 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 IGKV5-2P06315 115 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 LRRC24Q50LG9 513 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 GRAMD1CQ8IYS0 662 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 IRX2Q9BZI1 471 aaPredicted RBP17.01■□□□□ 0.31
HOXC11-202ENST00000546378 TMOD3Q9NYL9 352 aa17.01■□□□□ 0.31
HOXC11-202ENST00000546378 TMEM232C9JQI7 657 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 IDH1O75874 414 aaKnown RBP17■□□□□ 0.31
HOXC11-202ENST00000546378 IFIT1P09914 478 aaKnown RBP17■□□□□ 0.31
HOXC11-202ENST00000546378 PLA2G4DQ86XP0 818 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 PUS3Q9BZE2 481 aaKnown RBP17■□□□□ 0.31
HOXC11-202ENST00000546378 PLEKHA4Q9H4M7 779 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 BABAM1Q9NWV8 329 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 PAXBP1Q9Y5B6 917 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 CAMTA1Q9Y6Y1 1673 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 A1BGP04217 495 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 ANKRD7Q92527 254 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 PCDH11XQ9BZA7 1347 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 PCDH11YQ9BZA8 1340 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 CPDO75976 1380 aa17■□□□□ 0.31
HOXC11-202ENST00000546378 SNRPA1P09661 255 aaKnown RBP16.99■□□□□ 0.31
HOXC11-202ENST00000546378 TNNI3KQ59H18 835 aa16.99■□□□□ 0.31
HOXC11-202ENST00000546378 HELBQ8NG08 1087 aaPredicted RBP16.99■□□□□ 0.31
HOXC11-202ENST00000546378 FPGT-TNNI3KV9GXZ4 949 aa16.99■□□□□ 0.31
HOXC11-202ENST00000546378 GPTP24298 496 aa16.99■□□□□ 0.31
HOXC11-202ENST00000546378 ADD1P35611 737 aaKnown RBP16.99■□□□□ 0.31
HOXC11-202ENST00000546378 MCMDC2Q4G0Z9 681 aa16.99■□□□□ 0.31
HOXC11-202ENST00000546378 WWC2Q6AWC2 1192 aa16.99■□□□□ 0.31
HOXC11-202ENST00000546378 ANKRD13DQ6ZTN6 518 aa16.99■□□□□ 0.31
HOXC11-202ENST00000546378 DPF2Q92785 391 aa16.99■□□□□ 0.31
HOXC11-202ENST00000546378 NAT10Q9H0A0 1025 aaKnown RBP16.99■□□□□ 0.31
HOXC11-202ENST00000546378 IQSEC3Q9UPP2 1182 aaPredicted RBP16.99■□□□□ 0.31
HOXC11-202ENST00000546378 UBASH3AP57075 661 aa16.99■□□□□ 0.31
HOXC11-202ENST00000546378 ZNF397Q8NF99 534 aaPredicted RBP16.99■□□□□ 0.31
HOXC11-202ENST00000546378 LINS1Q8NG48 757 aa16.99■□□□□ 0.31
HOXC11-202ENST00000546378 TDRD7Q8NHU6 1098 aaKnown RBP16.99■□□□□ 0.31
HOXC11-202ENST00000546378 MRPS27Q92552 414 aaKnown RBP16.99■□□□□ 0.31
HOXC11-202ENST00000546378 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.99■□□□□ 0.31
HOXC11-202ENST00000546378 NSUN7Q8NE18 718 aaKnown RBP16.98■□□□□ 0.31
HOXC11-202ENST00000546378 ZNF396Q96N95 335 aaPredicted RBP16.98■□□□□ 0.31
HOXC11-202ENST00000546378 ASAP1Q9ULH1 1129 aa16.98■□□□□ 0.31
HOXC11-202ENST00000546378 TRPM3Q9HCF6 1732 aaPredicted RBP16.98■□□□□ 0.31
HOXC11-202ENST00000546378 SNAP23O00161 211 aa16.98■□□□□ 0.31
HOXC11-202ENST00000546378 FOXN1O15353 648 aa16.98■□□□□ 0.31
HOXC11-202ENST00000546378 CASP1P29466 404 aa16.98■□□□□ 0.31
HOXC11-202ENST00000546378 RGPD5Q99666 1765 aa16.98■□□□□ 0.31
HOXC11-202ENST00000546378 NUP133Q8WUM0 1156 aa16.97■□□□□ 0.31
HOXC11-202ENST00000546378 FAM170AA1A519 330 aa16.97■□□□□ 0.31
HOXC11-202ENST00000546378 HIP1O00291 1037 aa16.97■□□□□ 0.31
HOXC11-202ENST00000546378 TPM4P67936 248 aa16.97■□□□□ 0.31
HOXC11-202ENST00000546378 IQCB1Q15051 598 aa16.97■□□□□ 0.31
HOXC11-202ENST00000546378 TMCO3Q6UWJ1 677 aa16.97■□□□□ 0.31
HOXC11-202ENST00000546378 DHX40Q8IX18 779 aaKnown RBP16.97■□□□□ 0.31
HOXC11-202ENST00000546378 TRIM34Q9BYJ4 488 aa16.97■□□□□ 0.31
HOXC11-202ENST00000546378 DDX41Q9UJV9 622 aaKnown RBP16.97■□□□□ 0.31
HOXC11-202ENST00000546378 KDM6AO15550 1401 aaPredicted RBP16.97■□□□□ 0.31
HOXC11-202ENST00000546378 LMAN1P49257 510 aa16.96■□□□□ 0.31
HOXC11-202ENST00000546378 CLCN6P51797 869 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms