RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 GGA3Q9NZ52 723 aa14.7□□□□□ -0.06
HDAC4-216ENST00000544989 CEP126Q9P2H0 1117 aa14.7□□□□□ -0.06
HDAC4-216ENST00000544989 MKRN1Q9UHC7 482 aaKnown RBP14.7□□□□□ -0.06
HDAC4-216ENST00000544989 TLL2Q9Y6L7 1015 aa14.7□□□□□ -0.06
HDAC4-216ENST00000544989 FAM205AQ6ZU69 1335 aa14.69□□□□□ -0.06
HDAC4-216ENST00000544989 EGFRP00533 1210 aa14.69□□□□□ -0.06
HDAC4-216ENST00000544989 RGS19P49795 217 aa14.69□□□□□ -0.06
HDAC4-216ENST00000544989 CST9Q5W186 159 aa14.69□□□□□ -0.06
HDAC4-216ENST00000544989 FBXO33Q7Z6M2 555 aa14.69□□□□□ -0.06
HDAC4-216ENST00000544989 DZIP1LQ8IYY4 767 aaKnown RBP14.69□□□□□ -0.06
HDAC4-216ENST00000544989 KLHDC4Q8TBB5 520 aa14.69□□□□□ -0.06
HDAC4-216ENST00000544989 TBC1D22AQ8WUA7 517 aa14.69□□□□□ -0.06
HDAC4-216ENST00000544989 CLUAP1Q96AJ1 413 aa14.69□□□□□ -0.06
HDAC4-216ENST00000544989 COPRSQ9NQ92 184 aa14.69□□□□□ -0.06
HDAC4-216ENST00000544989 WBP1LQ9NX94 342 aa14.69□□□□□ -0.06
HDAC4-216ENST00000544989 SRGAP3O43295 1099 aa14.68□□□□□ -0.06
HDAC4-216ENST00000544989 FRAT2O75474 233 aaPredicted RBP14.68□□□□□ -0.06
HDAC4-216ENST00000544989 GYG1P46976 350 aa14.68□□□□□ -0.06
HDAC4-216ENST00000544989 CTCFP49711 727 aaPredicted RBP14.68□□□□□ -0.06
HDAC4-216ENST00000544989 ANGEL2Q5VTE6 544 aaKnown RBP14.68□□□□□ -0.06
HDAC4-216ENST00000544989 KIAA0825Q8IV33 1275 aa14.68□□□□□ -0.06
HDAC4-216ENST00000544989 MTMR14Q8NCE2 650 aa14.68□□□□□ -0.06
HDAC4-216ENST00000544989 PDE4DIPQ5VU43 2346 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 WNT10BO00744 389 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 MYO1BO43795 1136 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 FGFR2P21802 821 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 VEGFBP49765 207 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 DLGAP5Q15398 846 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 MFSD14BQ5SR56 506 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 ATG9AQ7Z3C6 839 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 APOBEC3FQ8IUX4 373 aaKnown RBP14.67□□□□□ -0.06
HDAC4-216ENST00000544989 TMEM57Q8N5G2 664 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 C2orf69Q8N8R5 385 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 MXD3Q9BW11 206 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 ZNF408Q9H9D4 720 aa14.67□□□□□ -0.06
HDAC4-216ENST00000544989 GNL3LQ9NVN8 582 aaKnown RBP14.67□□□□□ -0.06
HDAC4-216ENST00000544989 FKBP1BP68106 108 aa14.66□□□□□ -0.06
HDAC4-216ENST00000544989 SAPCD2Q86UD0 394 aa14.66□□□□□ -0.06
HDAC4-216ENST00000544989 SIL1Q9H173 461 aa14.66□□□□□ -0.06
HDAC4-216ENST00000544989 AKAP2Q9Y2D5 859 aa14.66□□□□□ -0.06
HDAC4-216ENST00000544989 SUGT1Q9Y2Z0 365 aa14.66□□□□□ -0.06
HDAC4-216ENST00000544989 WDR33Q9C0J8 1336 aaKnown RBP14.66□□□□□ -0.06
HDAC4-216ENST00000544989 NF2P35240 595 aa14.65□□□□□ -0.06
HDAC4-216ENST00000544989 ATP2B3Q16720 1220 aa14.65□□□□□ -0.06
HDAC4-216ENST00000544989 NBPF9Q3BBW0 867 aa14.65□□□□□ -0.06
HDAC4-216ENST00000544989 PAXIP1Q6ZW49 1069 aaPredicted RBP14.65□□□□□ -0.06
HDAC4-216ENST00000544989 ITPRIPQ8IWB1 547 aa14.65□□□□□ -0.06
HDAC4-216ENST00000544989 CERS5Q8N5B7 392 aa14.65□□□□□ -0.06
HDAC4-216ENST00000544989 ZBED3Q96IU2 234 aaPredicted RBP14.65□□□□□ -0.06
HDAC4-216ENST00000544989 CHMP4BQ9H444 224 aaKnown RBP14.65□□□□□ -0.06
HDAC4-216ENST00000544989 GBA2Q9HCG7 927 aaPredicted RBP14.65□□□□□ -0.06
HDAC4-216ENST00000544989 SERPINA10Q9UK55 444 aa14.65□□□□□ -0.06
HDAC4-216ENST00000544989 MAST3O60307 1309 aa14.65□□□□□ -0.06
HDAC4-216ENST00000544989 ZNF646O15015 1829 aaPredicted RBP14.64□□□□□ -0.07
HDAC4-216ENST00000544989 ADM5C9JUS6 153 aa14.64□□□□□ -0.07
HDAC4-216ENST00000544989 ZBTB22O15209 634 aa14.64□□□□□ -0.07
HDAC4-216ENST00000544989 MAP2K1Q02750 393 aaPredicted RBP14.64□□□□□ -0.07
HDAC4-216ENST00000544989 FMR1Q06787 632 aaKnown RBP eCLIP14.64□□□□□ -0.07
HDAC4-216ENST00000544989 AIDAQ96BJ3 306 aa14.64□□□□□ -0.07
HDAC4-216ENST00000544989 CAPNS2Q96L46 248 aa14.64□□□□□ -0.07
HDAC4-216ENST00000544989 COL1A1P02452 1464 aaPredicted RBP14.63□□□□□ -0.07
HDAC4-216ENST00000544989 SEMA3EO15041 775 aa14.63□□□□□ -0.07
HDAC4-216ENST00000544989 MAP2K2P36507 400 aa14.63□□□□□ -0.07
HDAC4-216ENST00000544989 BCAMP50895 628 aa14.63□□□□□ -0.07
HDAC4-216ENST00000544989 HUNKP57058 714 aa14.63□□□□□ -0.07
HDAC4-216ENST00000544989 HDLBPQ00341 1268 aaKnown RBP14.63□□□□□ -0.07
HDAC4-216ENST00000544989 G3BP1Q13283 466 aaKnown RBP eCLIP14.63□□□□□ -0.07
HDAC4-216ENST00000544989 WDR66Q8TBY9 1149 aa14.63□□□□□ -0.07
HDAC4-216ENST00000544989 CDCA5Q96FF9 252 aa14.63□□□□□ -0.07
HDAC4-216ENST00000544989 MRIQ9BWK5 157 aa14.63□□□□□ -0.07
HDAC4-216ENST00000544989 PA2G4Q9UQ80 394 aaKnown RBP14.63□□□□□ -0.07
HDAC4-216ENST00000544989 PPP2R3BQ9Y5P8 575 aa14.63□□□□□ -0.07
HDAC4-216ENST00000544989 POLR2AP24928 1970 aaKnown RBP14.63□□□□□ -0.07
HDAC4-216ENST00000544989 THSD7BQ9C0I4 1608 aa14.63□□□□□ -0.07
HDAC4-216ENST00000544989 SPDYE2BA6NHP3 402 aa14.62□□□□□ -0.07
HDAC4-216ENST00000544989 F8W031 263 aaPredicted RBP14.62□□□□□ -0.07
HDAC4-216ENST00000544989 SPDYE6P0CI01 402 aa14.62□□□□□ -0.07
HDAC4-216ENST00000544989 RBM5P52756 815 aaKnown RBP eCLIP14.62□□□□□ -0.071e-6■■■□□ 17.2
HDAC4-216ENST00000544989 CHAF1AQ13111 956 aaPredicted RBP14.62□□□□□ -0.07
HDAC4-216ENST00000544989 TNFAIP1Q13829 316 aa14.62□□□□□ -0.07
HDAC4-216ENST00000544989 CFAP100Q494V2 611 aa14.62□□□□□ -0.07
HDAC4-216ENST00000544989 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.62□□□□□ -0.07
HDAC4-216ENST00000544989 CCDC102AQ96A19 550 aa14.62□□□□□ -0.07
HDAC4-216ENST00000544989 ABHD8Q96I13 439 aa14.62□□□□□ -0.07
HDAC4-216ENST00000544989 RCAN3Q9UKA8 241 aa14.62□□□□□ -0.07
HDAC4-216ENST00000544989 TTF2Q9UNY4 1162 aaKnown RBP14.62□□□□□ -0.07
HDAC4-216ENST00000544989 TNNQ9UQP3 1299 aa14.62□□□□□ -0.07
HDAC4-216ENST00000544989 ASTN2O75129 1339 aaPredicted RBP14.62□□□□□ -0.07
HDAC4-216ENST00000544989 ZBTB7BO15156 539 aaPredicted RBP14.61□□□□□ -0.07
HDAC4-216ENST00000544989 ZGPATQ8N5A5 531 aaKnown RBP14.61□□□□□ -0.07
HDAC4-216ENST00000544989 BEGAINQ9BUH8 593 aa14.61□□□□□ -0.07
HDAC4-216ENST00000544989 DENND2AQ9ULE3 1009 aa14.61□□□□□ -0.07
HDAC4-216ENST00000544989 JAG2Q9Y219 1238 aa14.61□□□□□ -0.07
HDAC4-216ENST00000544989 HSPA8P11142 646 aaKnown RBP14.6□□□□□ -0.07
HDAC4-216ENST00000544989 RLBP1P12271 317 aa14.6□□□□□ -0.07
HDAC4-216ENST00000544989 LBX1P52954 281 aa14.6□□□□□ -0.07
HDAC4-216ENST00000544989 ATP8B2P98198 1209 aa14.6□□□□□ -0.07
HDAC4-216ENST00000544989 NOGQ13253 232 aa14.6□□□□□ -0.07
HDAC4-216ENST00000544989 MVPQ14764 893 aaKnown RBP14.6□□□□□ -0.07
HDAC4-216ENST00000544989 CYP4F22Q6NT55 531 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms