RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	IRS2	Q9Y4H2	1338 aa		13.69	□□□□□ -0.22
DDB1-222	ENST00000543627	SURF6	O75683	361 aa	Known RBP	13.69	□□□□□ -0.22
DDB1-222	ENST00000543627	SASH1	O94885	1247 aa		13.69	□□□□□ -0.22
DDB1-222	ENST00000543627	MVP	Q14764	893 aa	Known RBP	13.69	□□□□□ -0.22
DDB1-222	ENST00000543627	C20orf194	Q5TEA3	1177 aa		13.69	□□□□□ -0.22
DDB1-222	ENST00000543627	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.69	□□□□□ -0.22
DDB1-222	ENST00000543627	FBXO3	Q9UK99	471 aa		13.69	□□□□□ -0.22
DDB1-222	ENST00000543627	ABT1	Q9ULW3	272 aa	Known RBP	13.69	□□□□□ -0.22
DDB1-222	ENST00000543627	TMEM88B	A6NKF7	163 aa		13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	GRM1	Q13255	1194 aa		13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	MFSD14B	Q5SR56	506 aa		13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	GORAB	Q5T7V8	394 aa		13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	ANGEL2	Q5VTE6	544 aa	Known RBP	13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	CDC37L1	Q7L3B6	337 aa		13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	KRT26	Q7Z3Y9	468 aa		13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	FBXO33	Q7Z6M2	555 aa		13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	TDRD7	Q8NHU6	1098 aa	Known RBP	13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	GML	Q99445	158 aa		13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	GGA3	Q9NZ52	723 aa		13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	MKRN1	Q9UHC7	482 aa	Known RBP	13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	DDX19B	Q9UMR2	479 aa		13.68	□□□□□ -0.22
DDB1-222	ENST00000543627	ADM5	C9JUS6	153 aa		13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	APBB1	O00213	710 aa		13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	CELF2	O95319	508 aa	Known RBP	13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	FGFR2	P21802	821 aa		13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	ADORA1	P30542	326 aa		13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	ZNF280A	P59817	542 aa	Predicted RBP	13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	MTX1	Q13505	466 aa		13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	DLGAP5	Q15398	846 aa		13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	NBPF9	Q3BBW0	867 aa		13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	SULF1	Q8IWU6	871 aa		13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	CERS5	Q8N5B7	392 aa		13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	ZC3H15	Q8WU90	426 aa	Known RBP	13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	GNL3L	Q9NVN8	582 aa	Known RBP	13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	TTF2	Q9UNY4	1162 aa	Known RBP	13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	AKAP2	Q9Y2D5	859 aa		13.67	□□□□□ -0.22
DDB1-222	ENST00000543627	PASK	Q96RG2	1323 aa		13.66	□□□□□ -0.22
DDB1-222	ENST00000543627		A0A1B0GUL6	1792 aa		13.66	□□□□□ -0.22
DDB1-222	ENST00000543627		A0A1B0GUL7	405 aa		13.66	□□□□□ -0.22
DDB1-222	ENST00000543627	CEP350	Q5VT06	3117 aa		13.65	□□□□□ -0.22
DDB1-222	ENST00000543627	CFAP100	Q494V2	611 aa		13.65	□□□□□ -0.22
DDB1-222	ENST00000543627	PRAMEF18	Q5VWM3	479 aa		13.65	□□□□□ -0.22
DDB1-222	ENST00000543627	CEP85	Q6P2H3	762 aa		13.65	□□□□□ -0.22
DDB1-222	ENST00000543627	CHMP4B	Q9H444	224 aa	Known RBP	13.65	□□□□□ -0.22
DDB1-222	ENST00000543627	CREBZF	Q9NS37	354 aa		13.65	□□□□□ -0.22
DDB1-222	ENST00000543627	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.65	□□□□□ -0.22
DDB1-222	ENST00000543627	PGAP2	Q9UHJ9	254 aa		13.65	□□□□□ -0.22
DDB1-222	ENST00000543627	PCDHAC2	Q9Y5I4	1007 aa		13.65	□□□□□ -0.22
DDB1-222	ENST00000543627	CLRN2	A0PK11	232 aa		13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	WNT10B	O00744	389 aa		13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	PHKA1	P46020	1223 aa		13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	POLA2	Q14181	598 aa		13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	PDE3A	Q14432	1141 aa		13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	SSH3	Q8TE77	659 aa		13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	XAGE2	Q96GT9	111 aa		13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	VEZT	Q9HBM0	779 aa		13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	EXOC6B	Q9Y2D4	811 aa		13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	FAM205A	Q6ZU69	1335 aa		13.64	□□□□□ -0.23
DDB1-222	ENST00000543627	MYO1B	O43795	1136 aa		13.63	□□□□□ -0.23
DDB1-222	ENST00000543627	GRIK5	Q16478	980 aa		13.63	□□□□□ -0.23
DDB1-222	ENST00000543627	CST9	Q5W186	159 aa		13.63	□□□□□ -0.23
DDB1-222	ENST00000543627	CCDC102B	Q68D86	513 aa		13.63	□□□□□ -0.23
DDB1-222	ENST00000543627	DNAJC5G	Q8N7S2	189 aa		13.63	□□□□□ -0.23
DDB1-222	ENST00000543627	TBC1D22A	Q8WUA7	517 aa		13.63	□□□□□ -0.23
DDB1-222	ENST00000543627	KLRG1	Q96E93	195 aa		13.63	□□□□□ -0.23
DDB1-222	ENST00000543627	FKBP1A	P62942	108 aa	Known RBP	13.62	□□□□□ -0.23
DDB1-222	ENST00000543627	TTLL12	Q14166	644 aa	Predicted RBP	13.62	□□□□□ -0.23
DDB1-222	ENST00000543627	DEFB115	Q30KQ5	88 aa		13.62	□□□□□ -0.23
DDB1-222	ENST00000543627	PRMT6	Q96LA8	375 aa	Predicted RBP	13.62	□□□□□ -0.23
DDB1-222	ENST00000543627	ZBTB40	Q9NUA8	1239 aa		13.62	□□□□□ -0.23
DDB1-222	ENST00000543627	ADAMTSL1	Q8N6G6	1762 aa		13.62	□□□□□ -0.23
DDB1-222	ENST00000543627	POLR2A	P24928	1970 aa	Known RBP	13.62	□□□□□ -0.23
DDB1-222	ENST00000543627	HMMR	O75330	724 aa		13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	CRK	P46108	304 aa		13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	RRP1	P56182	461 aa	Known RBP	13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	PRKG1	Q13976	671 aa		13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	TTC39A	Q5SRH9	613 aa		13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	WDR66	Q8TBY9	1149 aa		13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	CDCA5	Q96FF9	252 aa		13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	TDRD3	Q9H7E2	651 aa	Known RBP	13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	ABCF2	Q9UG63	623 aa		13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	DENND2A	Q9ULE3	1009 aa		13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	PSME4	Q14997	1843 aa		13.61	□□□□□ -0.23
DDB1-222	ENST00000543627	MMP14	P50281	582 aa		13.6	□□□□□ -0.23
DDB1-222	ENST00000543627	TNNI3K	Q59H18	835 aa		13.6	□□□□□ -0.23
DDB1-222	ENST00000543627	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.6	□□□□□ -0.23
DDB1-222	ENST00000543627	C2orf69	Q8N8R5	385 aa		13.6	□□□□□ -0.23
DDB1-222	ENST00000543627	IL1RAPL2	Q9NP60	686 aa		13.6	□□□□□ -0.23
DDB1-222	ENST00000543627	FPGT-TNNI3K	V9GXZ4	949 aa		13.6	□□□□□ -0.23
DDB1-222	ENST00000543627	LDHB	P07195	334 aa	Known RBP	13.59	□□□□□ -0.23
DDB1-222	ENST00000543627	VEGFB	P49765	207 aa		13.59	□□□□□ -0.23
DDB1-222	ENST00000543627	CCDC158	Q5M9N0	1113 aa		13.59	□□□□□ -0.23
DDB1-222	ENST00000543627	CYP4F22	Q6NT55	531 aa		13.59	□□□□□ -0.23
DDB1-222	ENST00000543627	TEKT1	Q969V4	418 aa		13.59	□□□□□ -0.23
DDB1-222	ENST00000543627	DBNDD2	Q9BQY9	259 aa		13.59	□□□□□ -0.23
DDB1-222	ENST00000543627	GBA2	Q9HCG7	927 aa	Predicted RBP	13.59	□□□□□ -0.23
DDB1-222	ENST00000543627	SNRK	Q9NRH2	765 aa		13.59	□□□□□ -0.23
DDB1-222	ENST00000543627	SPDYE2B	A6NHP3	402 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms