RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	WDR66	Q8TBY9	1149 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	ZNF512B	Q96KM6	892 aa	Predicted RBP	12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	HMG20B	Q9P0W2	317 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	TTC41P	Q6P2S7	1318 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	PSMD14	O00487	310 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	MCAM	P43121	646 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	ZAP70	P43403	619 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	SCARF1	Q14162	830 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	PI16	Q6UXB8	463 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	SKAP1	Q86WV1	359 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	TBC1D22A	Q8WUA7	517 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	ABCF2	Q9UG63	623 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	STAP2	Q9UGK3	403 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	NDUFB9	Q9Y6M9	179 aa		12.37	□□□□□ -0.43
CPSF7-221	ENST00000543545	DUOX1	Q9NRD9	1551 aa		12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	GOLIM4	O00461	696 aa		12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	MAP4K4	O95819	1239 aa	Predicted RBP	12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	MFSD14B	Q5SR56	506 aa		12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	TBC1D9	Q6ZT07	1266 aa		12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	HAUS7	Q99871	368 aa		12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	MXD3	Q9BW11	206 aa		12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	LRP2BP	Q9P2M1	347 aa		12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	FAM205A	Q6ZU69	1335 aa		12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	ZNF541	Q9H0D2	1346 aa		12.36	□□□□□ -0.43
CPSF7-221	ENST00000543545	LRRC37A	A6NMS7	1700 aa		12.35	□□□□□ -0.43
CPSF7-221	ENST00000543545	TRIM6-TRIM34	B2RNG4	842 aa		12.35	□□□□□ -0.43
CPSF7-221	ENST00000543545		F8W031	263 aa	Predicted RBP	12.35	□□□□□ -0.43
CPSF7-221	ENST00000543545	VIL1	P09327	827 aa	Known RBP	12.35	□□□□□ -0.43
CPSF7-221	ENST00000543545	DACT2	Q5SW24	774 aa		12.35	□□□□□ -0.43
CPSF7-221	ENST00000543545	SPTY2D1	Q68D10	685 aa	Predicted RBP	12.35	□□□□□ -0.43
CPSF7-221	ENST00000543545	RSBN1L	Q6PCB5	846 aa	Predicted RBP	12.35	□□□□□ -0.43
CPSF7-221	ENST00000543545	ZGPAT	Q8N5A5	531 aa	Known RBP	12.35	□□□□□ -0.43
CPSF7-221	ENST00000543545	RAI14	Q9P0K7	980 aa		12.35	□□□□□ -0.43
CPSF7-221	ENST00000543545	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.35	□□□□□ -0.43
CPSF7-221	ENST00000543545	SPEF2	Q9C093	1822 aa		12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	BRCA1	P38398	1863 aa	Known RBP	12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	CACNA1S	Q13698	1873 aa		12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	IDH1	O75874	414 aa	Known RBP	12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	DDN	O94850	711 aa	Predicted RBP	12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	LDHB	P07195	334 aa	Known RBP	12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	TTF1	Q15361	905 aa	Predicted RBP	12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	ERICH6	Q7L0X2	663 aa		12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	KIAA0825	Q8IV33	1275 aa		12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	GPC2	Q8N158	579 aa		12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	PI4K2B	Q8TCG2	481 aa		12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	EDC3	Q96F86	508 aa	Known RBP	12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	PAG1	Q9NWQ8	432 aa		12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	AOX1	Q06278	1338 aa		12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	SALL3	Q9BXA9	1300 aa		12.34	□□□□□ -0.43
CPSF7-221	ENST00000543545	GOLGB1	Q14789	3259 aa	Known RBP	12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	CYP2E1	P05181	493 aa	Predicted RBP	12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	GMPS	P49915	693 aa	Predicted RBP	12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	DZIP1	Q86YF9	867 aa	Known RBP	12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	OGFOD1	Q8N543	542 aa		12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	AGBL3	Q8NEM8	1001 aa		12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	RILPL2	Q969X0	211 aa		12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	OSBPL3	Q9H4L5	887 aa		12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	ANTXR1	Q9H6X2	564 aa		12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	PIH1D3	Q9NQM4	214 aa	Known RBP	12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	PDS5A	Q29RF7	1337 aa	Known RBP	12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	MYO3B	Q8WXR4	1341 aa		12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.33	□□□□□ -0.44
CPSF7-221	ENST00000543545	GLTPD2	A6NH11	291 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	ZBTB22	O15209	634 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	USP17L8	P0C7I0	530 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	RPS12	P25398	132 aa	Known RBP	12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	LMOD1	P29536	600 aa	Predicted RBP	12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	RBM5	P52756	815 aa	Known RBP eCLIP	12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	FKBP1A	P62942	108 aa	Known RBP	12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	MAP3K12	Q12852	859 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	TTC22	Q5TAA0	569 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	CNTROB	Q8N137	903 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	CERS5	Q8N5B7	392 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	HDAC9	Q9UKV0	1011 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	TTF2	Q9UNY4	1162 aa	Known RBP	12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	SALL1	Q9NSC2	1324 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	ARFGEF1	Q9Y6D6	1849 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545	COL4A5	P29400	1685 aa		12.32	□□□□□ -0.44
CPSF7-221	ENST00000543545		H7C1D1	291 aa		12.31	□□□□□ -0.44
CPSF7-221	ENST00000543545	PRDX5	P30044	214 aa		12.31	□□□□□ -0.44
CPSF7-221	ENST00000543545	SCNN1D	P51172	638 aa		12.31	□□□□□ -0.44
CPSF7-221	ENST00000543545	GRIK5	Q16478	980 aa		12.31	□□□□□ -0.44
CPSF7-221	ENST00000543545	RBM26	Q5T8P6	1007 aa	Known RBP	12.31	□□□□□ -0.44
CPSF7-221	ENST00000543545	ZNF526	Q8TF50	670 aa	Predicted RBP	12.31	□□□□□ -0.44
CPSF7-221	ENST00000543545	EVI5L	Q96CN4	794 aa		12.31	□□□□□ -0.44
CPSF7-221	ENST00000543545	FSD1	Q9BTV5	496 aa		12.31	□□□□□ -0.44
CPSF7-221	ENST00000543545	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	12.31	□□□□□ -0.44	4e-7	■■■□□ 16.7
CPSF7-221	ENST00000543545	CNOT7	Q9UIV1	285 aa	Known RBP	12.31	□□□□□ -0.44
CPSF7-221	ENST00000543545	SUGT1	Q9Y2Z0	365 aa		12.31	□□□□□ -0.44
CPSF7-221	ENST00000543545	GSTO1	P78417	241 aa		12.3	□□□□□ -0.44
CPSF7-221	ENST00000543545	LRRFIP1	Q32MZ4	808 aa	Known RBP	12.3	□□□□□ -0.44
CPSF7-221	ENST00000543545	NAA16	Q6N069	864 aa	Predicted RBP	12.3	□□□□□ -0.44
CPSF7-221	ENST00000543545	ZSCAN25	Q6NSZ9	544 aa		12.3	□□□□□ -0.44
CPSF7-221	ENST00000543545	SLF2	Q8IX21	1173 aa		12.3	□□□□□ -0.44
CPSF7-221	ENST00000543545	MICALL2	Q8IY33	904 aa		12.3	□□□□□ -0.44
CPSF7-221	ENST00000543545	MAGEB6	Q8N7X4	407 aa		12.3	□□□□□ -0.44
CPSF7-221	ENST00000543545	DPF2	Q92785	391 aa		12.3	□□□□□ -0.44
CPSF7-221	ENST00000543545	LTBP1	Q14766	1721 aa		12.3	□□□□□ -0.44
CPSF7-221	ENST00000543545	MAST3	O60307	1309 aa		12.3	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms