RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 DLGAP5Q15398 846 aa22.8■■□□□ 1.24
CLSTN3-214ENST00000542663 AOX1Q06278 1338 aa22.8■■□□□ 1.24
CLSTN3-214ENST00000542663 MANSC4A6NHS7 340 aaPredicted RBP22.79■■□□□ 1.24
CLSTN3-214ENST00000542663 IGF2BP3O00425 579 aaKnown RBP eCLIP22.79■■□□□ 1.24
CLSTN3-214ENST00000542663 TAF5LO75529 589 aa22.79■■□□□ 1.24
CLSTN3-214ENST00000542663 ZBTB48P10074 688 aaPredicted RBP22.79■■□□□ 1.24
CLSTN3-214ENST00000542663 KCNJ4P48050 445 aa22.79■■□□□ 1.24
CLSTN3-214ENST00000542663 FLIIQ13045 1269 aa22.79■■□□□ 1.24
CLSTN3-214ENST00000542663 C15orf52Q6ZUT6 534 aaKnown RBP22.79■■□□□ 1.24
CLSTN3-214ENST00000542663 SLC10A4Q96EP9 437 aa22.79■■□□□ 1.24
CLSTN3-214ENST00000542663 WNK4Q96J92 1243 aa22.79■■□□□ 1.24
CLSTN3-214ENST00000542663 INHBEP58166 350 aa22.78■■□□□ 1.24
CLSTN3-214ENST00000542663 HELBQ8NG08 1087 aaPredicted RBP22.78■■□□□ 1.24
CLSTN3-214ENST00000542663 DNAAF4Q8WXU2 420 aa22.78■■□□□ 1.24
CLSTN3-214ENST00000542663 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.78■■□□□ 1.24
CLSTN3-214ENST00000542663 IL1R1P14778 569 aa22.77■■□□□ 1.24
CLSTN3-214ENST00000542663 CCDC27Q2M243 656 aa22.77■■□□□ 1.24
CLSTN3-214ENST00000542663 OTOP1Q7RTM1 612 aa22.77■■□□□ 1.24
CLSTN3-214ENST00000542663 WWC1Q8IX03 1113 aa22.77■■□□□ 1.24
CLSTN3-214ENST00000542663 LINS1Q8NG48 757 aa22.77■■□□□ 1.24
CLSTN3-214ENST00000542663 MYH16Q9H6N6 1097 aa22.77■■□□□ 1.24
CLSTN3-214ENST00000542663 TRIM17Q9Y577 477 aa22.77■■□□□ 1.24
CLSTN3-214ENST00000542663 PPP2R3BQ9Y5P8 575 aa22.77■■□□□ 1.24
CLSTN3-214ENST00000542663 CLRN2A0PK11 232 aa22.76■■□□□ 1.23
CLSTN3-214ENST00000542663 ANKRD18BA2A2Z9 1011 aa22.76■■□□□ 1.23
CLSTN3-214ENST00000542663 SPDYE2BA6NHP3 402 aa22.76■■□□□ 1.23
CLSTN3-214ENST00000542663 F8W031 263 aaPredicted RBP22.76■■□□□ 1.23
CLSTN3-214ENST00000542663 SPDYE6P0CI01 402 aa22.76■■□□□ 1.23
CLSTN3-214ENST00000542663 FOXO4P98177 505 aa22.76■■□□□ 1.23
CLSTN3-214ENST00000542663 CFAP100Q494V2 611 aa22.76■■□□□ 1.23
CLSTN3-214ENST00000542663 PRMT6Q96LA8 375 aaPredicted RBP22.76■■□□□ 1.23
CLSTN3-214ENST00000542663 KIAA0100Q14667 2235 aaKnown RBP22.76■■□□□ 1.23
CLSTN3-214ENST00000542663 PPP1R12BO60237 982 aaPredicted RBP22.75■■□□□ 1.23
CLSTN3-214ENST00000542663 GJA5P36382 358 aa22.75■■□□□ 1.23
CLSTN3-214ENST00000542663 FKBP5Q13451 457 aaPredicted RBP22.75■■□□□ 1.23
CLSTN3-214ENST00000542663 CCDC184Q52MB2 194 aa22.75■■□□□ 1.23
CLSTN3-214ENST00000542663 NBPF12Q5TAG4 269 aaPredicted RBP22.75■■□□□ 1.23
CLSTN3-214ENST00000542663 POTEFA5A3E0 1075 aa22.74■■□□□ 1.23
CLSTN3-214ENST00000542663 UNCXA6NJT0 531 aa22.73■■□□□ 1.23
CLSTN3-214ENST00000542663 USP2O75604 605 aaPredicted RBP22.73■■□□□ 1.23
CLSTN3-214ENST00000542663 FKBP1AP62942 108 aaKnown RBP22.73■■□□□ 1.23
CLSTN3-214ENST00000542663 ZNF804AQ7Z570 1209 aa22.73■■□□□ 1.23
CLSTN3-214ENST00000542663 JAG2Q9Y219 1238 aa22.73■■□□□ 1.23
CLSTN3-214ENST00000542663 ZSWIM8A7E2V4 1837 aa22.73■■□□□ 1.23
CLSTN3-214ENST00000542663 MYO1BO43795 1136 aa22.72■■□□□ 1.23
CLSTN3-214ENST00000542663 CAP1Q01518 475 aa22.72■■□□□ 1.23
CLSTN3-214ENST00000542663 CRHR2Q13324 411 aa22.72■■□□□ 1.23
CLSTN3-214ENST00000542663 IFIT5Q13325 482 aaKnown RBP22.72■■□□□ 1.23
CLSTN3-214ENST00000542663 SUPT20HL1Q3ZLR7 823 aa22.72■■□□□ 1.23
CLSTN3-214ENST00000542663 VEZTQ9HBM0 779 aa22.72■■□□□ 1.23
CLSTN3-214ENST00000542663 IL16Q14005 1332 aa22.72■■□□□ 1.23
CLSTN3-214ENST00000542663 CD99L2Q8TCZ2 262 aa22.71■■□□□ 1.23
CLSTN3-214ENST00000542663 PTPN18Q99952 460 aa22.71■■□□□ 1.23
CLSTN3-214ENST00000542663 PTPN22Q9Y2R2 807 aa22.71■■□□□ 1.23
CLSTN3-214ENST00000542663 RASA3Q14644 834 aa22.7■■□□□ 1.22
CLSTN3-214ENST00000542663 INTS3Q68E01 1043 aaKnown RBP22.7■■□□□ 1.22
CLSTN3-214ENST00000542663 ZNF594Q96JF6 807 aaPredicted RBP22.7■■□□□ 1.22
CLSTN3-214ENST00000542663 FANCIQ9NVI1 1328 aa22.7■■□□□ 1.22
CLSTN3-214ENST00000542663 TESPA1A2RU30 521 aaPredicted RBP22.69■■□□□ 1.22
CLSTN3-214ENST00000542663 F6X3S4 739 aa22.69■■□□□ 1.22
CLSTN3-214ENST00000542663 IREB2P48200 963 aaKnown RBP22.69■■□□□ 1.22
CLSTN3-214ENST00000542663 EPHA10Q5JZY3 1008 aa22.69■■□□□ 1.22
CLSTN3-214ENST00000542663 ERO1AQ96HE7 468 aa22.69■■□□□ 1.22
CLSTN3-214ENST00000542663 CHMP3Q9Y3E7 222 aa22.69■■□□□ 1.22
CLSTN3-214ENST00000542663 VAMP4O75379 141 aa22.68■■□□□ 1.22
CLSTN3-214ENST00000542663 BEND3Q5T5X7 828 aa22.68■■□□□ 1.22
CLSTN3-214ENST00000542663 LMBR1LQ6UX01 489 aa22.68■■□□□ 1.22
CLSTN3-214ENST00000542663 ANKRD13AQ8IZ07 590 aa22.68■■□□□ 1.22
CLSTN3-214ENST00000542663 FAM205AQ6ZU69 1335 aa22.67■■□□□ 1.22
CLSTN3-214ENST00000542663 RBM5P52756 815 aaKnown RBP eCLIP22.67■■□□□ 1.22
CLSTN3-214ENST00000542663 CDAN1Q8IWY9 1227 aa22.67■■□□□ 1.22
CLSTN3-214ENST00000542663 GCC1Q96CN9 775 aa22.67■■□□□ 1.22
CLSTN3-214ENST00000542663 PLIN1O60240 522 aa22.66■■□□□ 1.22
CLSTN3-214ENST00000542663 SPDYE2Q495Y8 402 aa22.66■■□□□ 1.22
CLSTN3-214ENST00000542663 OTUD7BQ6GQQ9 843 aa22.66■■□□□ 1.22
CLSTN3-214ENST00000542663 ARMC5Q96C12 935 aa22.66■■□□□ 1.22
CLSTN3-214ENST00000542663 MS4A4AQ96JQ5 239 aa22.66■■□□□ 1.22
CLSTN3-214ENST00000542663 TEPSINQ96N21 525 aa22.66■■□□□ 1.22
CLSTN3-214ENST00000542663 ELP3Q9H9T3 547 aa22.66■■□□□ 1.22
CLSTN3-214ENST00000542663 ZNF70Q9UC06 446 aaPredicted RBP22.66■■□□□ 1.22
CLSTN3-214ENST00000542663 MYH13Q9UKX3 1938 aa22.66■■□□□ 1.22
CLSTN3-214ENST00000542663 SP3Q02447 781 aa22.65■■□□□ 1.22
CLSTN3-214ENST00000542663 LDHAL6AQ6ZMR3 332 aa22.65■■□□□ 1.22
CLSTN3-214ENST00000542663 TDRD7Q8NHU6 1098 aaKnown RBP22.65■■□□□ 1.22
CLSTN3-214ENST00000542663 OPTNQ96CV9 577 aa22.65■■□□□ 1.22
CLSTN3-214ENST00000542663 EFCC1Q9HA90 598 aa22.65■■□□□ 1.22
CLSTN3-214ENST00000542663 NCBP3Q53F19 620 aaKnown RBP22.64■■□□□ 1.21
CLSTN3-214ENST00000542663 HABP4Q5JVS0 413 aaKnown RBP22.64■■□□□ 1.21
CLSTN3-214ENST00000542663 MFSD14BQ5SR56 506 aa22.64■■□□□ 1.21
CLSTN3-214ENST00000542663 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.64■■□□□ 1.21
CLSTN3-214ENST00000542663 CNKSR2Q8WXI2 1034 aa22.64■■□□□ 1.21
CLSTN3-214ENST00000542663 TDRD3Q9H7E2 651 aaKnown RBP22.64■■□□□ 1.21
CLSTN3-214ENST00000542663 EN2P19622 333 aaPredicted RBP22.63■■□□□ 1.21
CLSTN3-214ENST00000542663 EXOSC9Q06265 439 aaKnown RBP22.63■■□□□ 1.21
CLSTN3-214ENST00000542663 TNFAIP1Q13829 316 aa22.63■■□□□ 1.21
CLSTN3-214ENST00000542663 CCDC57Q2TAC2 916 aa22.63■■□□□ 1.21
CLSTN3-214ENST00000542663 CNNM1Q9NRU3 951 aa22.63■■□□□ 1.21
CLSTN3-214ENST00000542663 SERPINA10Q9UK55 444 aa22.63■■□□□ 1.21
CLSTN3-214ENST00000542663 TTF2Q9UNY4 1162 aaKnown RBP22.63■■□□□ 1.21
CLSTN3-214ENST00000542663 GRM8O00222 908 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms