RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 ZBTB22O15209 634 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 PDE6AP16499 860 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 HSPA4P34932 840 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 ADD2P35612 726 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 CHAF1AQ13111 956 aaPredicted RBP8.86□□□□□ -0.99
VPS53-205ENST00000541903 SLC9C2Q5TAH2 1124 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 RNF20Q5VTR2 975 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 ZNF589Q86UQ0 364 aaPredicted RBP8.86□□□□□ -0.99
VPS53-205ENST00000541903 SLC51AQ86UW1 340 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 HSCBQ8IWL3 235 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 ABCF2Q9UG63 623 aa8.86□□□□□ -0.99
VPS53-205ENST00000541903 ZNF532Q9HCE3 1301 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 M0R2C6 588 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 CHGBP05060 677 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 ZKSCAN1P17029 563 aaPredicted RBP8.85□□□□□ -0.99
VPS53-205ENST00000541903 PTH1RQ03431 593 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 CC2D2BQ6DHV5 1058 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 CCDC129Q6ZRS4 1044 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 TXNRD3Q86VQ6 643 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 ZGPATQ8N5A5 531 aaKnown RBP8.85□□□□□ -0.99
VPS53-205ENST00000541903 MAGEB6Q8N7X4 407 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 GPR101Q96P66 508 aaPredicted RBP8.85□□□□□ -0.99
VPS53-205ENST00000541903 SEC62Q99442 399 aaKnown RBP8.85□□□□□ -0.99
VPS53-205ENST00000541903 EYA3Q99504 573 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 KIF2CQ99661 725 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 RAI14Q9P0K7 980 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 POLLQ9UGP5 575 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 WWC3Q9ULE0 1092 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 ATF5Q9Y2D1 282 aaPredicted RBP8.85□□□□□ -0.99
VPS53-205ENST00000541903 RBM8AQ9Y5S9 174 aaKnown RBP8.85□□□□□ -0.99
VPS53-205ENST00000541903 U3KPZ7 1027 aaPredicted RBP8.85□□□□□ -0.99
VPS53-205ENST00000541903 DUOX1Q9NRD9 1551 aa8.85□□□□□ -0.99
VPS53-205ENST00000541903 PSDA5PKW4 1024 aaPredicted RBP8.84□□□□□ -0.99
VPS53-205ENST00000541903 G3V3G9 751 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 IGSF3O75054 1194 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 DPEP1P16444 411 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 SLFNL1Q499Z3 407 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 GRIPAP1Q4V328 841 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 DCAF8Q5TAQ9 597 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 SPTY2D1Q68D10 685 aaPredicted RBP8.84□□□□□ -0.99
VPS53-205ENST00000541903 TMED8Q6PL24 325 aaPredicted RBP8.84□□□□□ -0.99
VPS53-205ENST00000541903 ERICH6Q7L0X2 663 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 TTLL6Q8N841 843 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 TDRD7Q8NHU6 1098 aaKnown RBP8.84□□□□□ -0.99
VPS53-205ENST00000541903 WDR66Q8TBY9 1149 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 MAP4K1Q92918 833 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 OSBP2Q969R2 916 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 AIDAQ96BJ3 306 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 DSCC1Q9BVC3 393 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 ZC3H12CQ9C0D7 883 aaKnown RBP8.84□□□□□ -0.99
VPS53-205ENST00000541903 COA1Q9GZY4 146 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 CD209Q9NNX6 404 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 PALD1Q9ULE6 856 aa8.84□□□□□ -0.99
VPS53-205ENST00000541903 SALL1Q9NSC2 1324 aa8.83□□□□□ -1
VPS53-205ENST00000541903 LTBP1Q14766 1721 aa8.83□□□□□ -1
VPS53-205ENST00000541903 TCRBV5S4A2TA0A5A2 114 aa8.83□□□□□ -1
VPS53-205ENST00000541903 RIMBP2O15034 1052 aa8.83□□□□□ -1
VPS53-205ENST00000541903 GPAA1O43292 621 aa8.83□□□□□ -1
VPS53-205ENST00000541903 ST18O60284 1047 aa8.83□□□□□ -1
VPS53-205ENST00000541903 IL1R1P14778 569 aa8.83□□□□□ -1
VPS53-205ENST00000541903 CYP7A1P22680 504 aa8.83□□□□□ -1
VPS53-205ENST00000541903 TGFB2P61812 414 aa8.83□□□□□ -1
VPS53-205ENST00000541903 CCDC93Q567U6 631 aa8.83□□□□□ -1
VPS53-205ENST00000541903 CREB3L3Q68CJ9 461 aa8.83□□□□□ -1
VPS53-205ENST00000541903 OLFM4Q6UX06 510 aa8.83□□□□□ -1
VPS53-205ENST00000541903 DZIP1Q86YF9 867 aaKnown RBP8.83□□□□□ -1
VPS53-205ENST00000541903 SUPT20HQ8NEM7 779 aa8.83□□□□□ -1
VPS53-205ENST00000541903 IL27Q8NEV9 243 aa8.83□□□□□ -1
VPS53-205ENST00000541903 SNX21Q969T3 373 aa8.83□□□□□ -1
VPS53-205ENST00000541903 IL17RAQ96F46 866 aa8.83□□□□□ -1
VPS53-205ENST00000541903 PUS7LQ9H0K6 701 aaKnown RBP8.83□□□□□ -1
VPS53-205ENST00000541903 ZNF219Q9P2Y4 722 aaPredicted RBP8.83□□□□□ -1
VPS53-205ENST00000541903 CTNNA3Q9UI47 895 aa8.83□□□□□ -1
VPS53-205ENST00000541903 SNX14Q9Y5W7 946 aa8.83□□□□□ -1
VPS53-205ENST00000541903 AKAP11Q9UKA4 1901 aa8.83□□□□□ -1
VPS53-205ENST00000541903 A0A0G2JLW4 131 aa8.82□□□□□ -1
VPS53-205ENST00000541903 SLC27A2O14975 620 aa8.82□□□□□ -1
VPS53-205ENST00000541903 MBD4O95243 580 aa8.82□□□□□ -1
VPS53-205ENST00000541903 HSPD1P10809 573 aaKnown RBP8.82□□□□□ -1
VPS53-205ENST00000541903 KRT32Q14532 448 aa8.82□□□□□ -1
VPS53-205ENST00000541903 NECTIN1Q15223 517 aa8.82□□□□□ -1
VPS53-205ENST00000541903 SOGA3Q5TF21 947 aa8.82□□□□□ -1
VPS53-205ENST00000541903 VPS53Q5VIR6 699 aa8.82□□□□□ -1
VPS53-205ENST00000541903 NAA16Q6N069 864 aaPredicted RBP8.82□□□□□ -1
VPS53-205ENST00000541903 KLHL34Q8N239 644 aa8.82□□□□□ -1
VPS53-205ENST00000541903 TBC1D22AQ8WUA7 517 aa8.82□□□□□ -1
VPS53-205ENST00000541903 KCNB2Q92953 911 aa8.82□□□□□ -1
VPS53-205ENST00000541903 TBC1D2Q9BYX2 928 aa8.82□□□□□ -1
VPS53-205ENST00000541903 PPP1R1BQ9UD71 204 aaPredicted RBP8.82□□□□□ -1
VPS53-205ENST00000541903 JAG2Q9Y219 1238 aa8.82□□□□□ -1
VPS53-205ENST00000541903 MAGEB6P1A0A0J9YX57 407 aa8.81□□□□□ -1
VPS53-205ENST00000541903 C21orf2O43822 256 aa8.81□□□□□ -1
VPS53-205ENST00000541903 LDHBP07195 334 aaKnown RBP8.81□□□□□ -1
VPS53-205ENST00000541903 GNAT2P19087 354 aa8.81□□□□□ -1
VPS53-205ENST00000541903 PSMA5P28066 241 aa8.81□□□□□ -1
VPS53-205ENST00000541903 PRDX5P30044 214 aa8.81□□□□□ -1
VPS53-205ENST00000541903 GSTO1P78417 241 aa8.81□□□□□ -1
VPS53-205ENST00000541903 MECOMQ03112 1051 aa8.81□□□□□ -1
VPS53-205ENST00000541903 RASEFQ8IZ41 740 aa8.81□□□□□ -1
VPS53-205ENST00000541903 RTKN2Q8IZC4 609 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms