RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 CCDC171Q6TFL3 1326 aa21.33■■□□□ 1.01
CLIP1-215ENST00000541108 IDH1O75874 414 aaKnown RBP21.33■■□□□ 1
CLIP1-215ENST00000541108 ANAPC15P60006 121 aa21.33■■□□□ 1
CLIP1-215ENST00000541108 GRIPAP1Q4V328 841 aa21.33■■□□□ 1
CLIP1-215ENST00000541108 SLC9C2Q5TAH2 1124 aa21.33■■□□□ 1
CLIP1-215ENST00000541108 DPP8Q6V1X1 898 aaPredicted RBP21.33■■□□□ 1
CLIP1-215ENST00000541108 APPBP2Q92624 585 aa21.33■■□□□ 1
CLIP1-215ENST00000541108 MAP4K1Q92918 833 aa21.33■■□□□ 1
CLIP1-215ENST00000541108 KIF2CQ99661 725 aa21.33■■□□□ 1
CLIP1-215ENST00000541108 C6orf229H3BNL8 230 aa21.32■■□□□ 1
CLIP1-215ENST00000541108 HSPA4P34932 840 aa21.32■■□□□ 1
CLIP1-215ENST00000541108 C7orf43Q8WVR3 580 aa21.32■■□□□ 1
CLIP1-215ENST00000541108 IQSEC3Q9UPP2 1182 aaPredicted RBP21.32■■□□□ 1
CLIP1-215ENST00000541108 SLX4Q8IY92 1834 aa21.32■■□□□ 1
CLIP1-215ENST00000541108 CHGBP05060 677 aa21.31■■□□□ 1
CLIP1-215ENST00000541108 IL1R1P14778 569 aa21.31■■□□□ 1
CLIP1-215ENST00000541108 TMED8Q6PL24 325 aaPredicted RBP21.31■■□□□ 1
CLIP1-215ENST00000541108 ZNF589Q86UQ0 364 aaPredicted RBP21.31■■□□□ 1
CLIP1-215ENST00000541108 TTLL6Q8N841 843 aa21.31■■□□□ 1
CLIP1-215ENST00000541108 IL17RAQ96F46 866 aa21.31■■□□□ 1
CLIP1-215ENST00000541108 IPO9Q96P70 1041 aaKnown RBP21.31■■□□□ 1
CLIP1-215ENST00000541108 SEC62Q99442 399 aaKnown RBP21.31■■□□□ 1
CLIP1-215ENST00000541108 SGIP1Q9BQI5 828 aa21.31■■□□□ 1
CLIP1-215ENST00000541108 LRP2BPQ9P2M1 347 aa21.31■■□□□ 1
CLIP1-215ENST00000541108 MYH13Q9UKX3 1938 aa21.31■■□□□ 1
CLIP1-215ENST00000541108 CD209Q9NNX6 404 aa21.31■■□□□ 1
CLIP1-215ENST00000541108 CACNA1SQ13698 1873 aa21.3■■□□□ 1
CLIP1-215ENST00000541108 MYO5AQ9Y4I1 1855 aaKnown RBP21.3■■□□□ 1
CLIP1-215ENST00000541108 COL1A1P02452 1464 aaPredicted RBP21.3■■□□□ 1
CLIP1-215ENST00000541108 PDE6AP16499 860 aa21.3■■□□□ 1
CLIP1-215ENST00000541108 KCNA3P22001 575 aa21.3■■□□□ 1
CLIP1-215ENST00000541108 PTH1RQ03431 593 aa21.3■■□□□ 1
CLIP1-215ENST00000541108 IL27Q8NEV9 243 aa21.3■■□□□ 1
CLIP1-215ENST00000541108 OSBP2Q969R2 916 aa21.3■■□□□ 1
CLIP1-215ENST00000541108 EYA3Q99504 573 aa21.3■■□□□ 1
CLIP1-215ENST00000541108 ZC3H12CQ9C0D7 883 aaKnown RBP21.3■■□□□ 1
CLIP1-215ENST00000541108 MAST3O60307 1309 aa21.29■■□□□ 1
CLIP1-215ENST00000541108 SALL1Q9NSC2 1324 aa21.29■■□□□ 1
CLIP1-215ENST00000541108 ZGPATQ8N5A5 531 aaKnown RBP21.29■■□□□ 1
CLIP1-215ENST00000541108 WDR66Q8TBY9 1149 aa21.29■■□□□ 1
CLIP1-215ENST00000541108 RTFDC1Q9BY42 306 aaPredicted RBP21.29■■□□□ 1
CLIP1-215ENST00000541108 DUOX1Q9NRD9 1551 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 TCRBV5S4A2TA0A5A2 114 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 DPEP1P16444 411 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 NECTIN1Q15223 517 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 COA1Q9GZY4 146 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 ABCF2Q9UG63 623 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 ZNF532Q9HCE3 1301 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 A0A0G2JLW4 131 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 PSDA5PKW4 1024 aaPredicted RBP21.28■■□□□ 1
CLIP1-215ENST00000541108 SLFNL1Q499Z3 407 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 OLFM4Q6UX06 510 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 DSCC1Q9BVC3 393 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 WWC3Q9ULE0 1092 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 CD2APQ9Y5K6 639 aa21.28■■□□□ 1
CLIP1-215ENST00000541108 RABEP1Q15276 862 aa21.27■■□□□ 1
CLIP1-215ENST00000541108 SPTY2D1Q68D10 685 aaPredicted RBP21.27■■□□□ 1
CLIP1-215ENST00000541108 MAGEB6Q8N7X4 407 aa21.27■■□□□ 1
CLIP1-215ENST00000541108 KCNB2Q92953 911 aa21.27■■□□□ 1
CLIP1-215ENST00000541108 GPR101Q96P66 508 aaPredicted RBP21.27■■□□□ 1
CLIP1-215ENST00000541108 PUS7LQ9H0K6 701 aaKnown RBP21.27■■□□□ 1
CLIP1-215ENST00000541108 PTGER2P43116 358 aa21.26■□□□□ 0.99
CLIP1-215ENST00000541108 CCDC129Q6ZRS4 1044 aa21.26■□□□□ 0.99
CLIP1-215ENST00000541108 ERICH6Q7L0X2 663 aa21.26■□□□□ 0.99
CLIP1-215ENST00000541108 PIM2Q9P1W9 311 aa21.26■□□□□ 0.99
CLIP1-215ENST00000541108 M0R2C6 588 aa21.25■□□□□ 0.99
CLIP1-215ENST00000541108 RNF20Q5VTR2 975 aa21.25■□□□□ 0.99
CLIP1-215ENST00000541108 SUPT20HQ8NEM7 779 aa21.25■□□□□ 0.99
CLIP1-215ENST00000541108 RBM8AQ9Y5S9 174 aaKnown RBP21.25■□□□□ 0.99
CLIP1-215ENST00000541108 U3KPZ7 1027 aaPredicted RBP21.25■□□□□ 0.99
CLIP1-215ENST00000541108 SNED1Q8TER0 1413 aa21.25■□□□□ 0.99
CLIP1-215ENST00000541108 RTKN2Q8IZC4 609 aa21.24■□□□□ 0.99
CLIP1-215ENST00000541108 RAI14Q9P0K7 980 aa21.24■□□□□ 0.99
CLIP1-215ENST00000541108 GPAA1O43292 621 aa21.24■□□□□ 0.99
CLIP1-215ENST00000541108 HSPD1P10809 573 aaKnown RBP21.24■□□□□ 0.99
CLIP1-215ENST00000541108 ZKSCAN1P17029 563 aaPredicted RBP21.24■□□□□ 0.99
CLIP1-215ENST00000541108 CHAF1AQ13111 956 aaPredicted RBP21.24■□□□□ 0.99
CLIP1-215ENST00000541108 BECN1Q14457 450 aa21.24■□□□□ 0.99
CLIP1-215ENST00000541108 SOGA3Q5TF21 947 aa21.24■□□□□ 0.99
CLIP1-215ENST00000541108 PALD1Q9ULE6 856 aa21.24■□□□□ 0.99
CLIP1-215ENST00000541108 RIMBP2O15034 1052 aa21.23■□□□□ 0.99
CLIP1-215ENST00000541108 TBC1D22AQ8WUA7 517 aa21.23■□□□□ 0.99
CLIP1-215ENST00000541108 SNX21Q969T3 373 aa21.23■□□□□ 0.99
CLIP1-215ENST00000541108 KIAA1551Q9HCM1 1747 aa21.23■□□□□ 0.99
CLIP1-215ENST00000541108 FAM205AQ6ZU69 1335 aa21.23■□□□□ 0.99
CLIP1-215ENST00000541108 C21orf2O43822 256 aa21.22■□□□□ 0.99
CLIP1-215ENST00000541108 TSGA10IPQ3SY00 556 aa21.22■□□□□ 0.99
CLIP1-215ENST00000541108 CCDC93Q567U6 631 aa21.22■□□□□ 0.99
CLIP1-215ENST00000541108 PODNQ7Z5L7 613 aa21.22■□□□□ 0.99
CLIP1-215ENST00000541108 AIDAQ96BJ3 306 aa21.22■□□□□ 0.99
CLIP1-215ENST00000541108 NSUN4Q96CB9 384 aaKnown RBP21.22■□□□□ 0.99
CLIP1-215ENST00000541108 CREB3L3Q68CJ9 461 aa21.21■□□□□ 0.99
CLIP1-215ENST00000541108 NAA16Q6N069 864 aaPredicted RBP21.21■□□□□ 0.99
CLIP1-215ENST00000541108 ILDR2Q71H61 639 aa21.21■□□□□ 0.99
CLIP1-215ENST00000541108 SNX14Q9Y5W7 946 aa21.21■□□□□ 0.99
CLIP1-215ENST00000541108 CYP7A1P22680 504 aa21.21■□□□□ 0.99
CLIP1-215ENST00000541108 VPS53Q5VIR6 699 aa21.21■□□□□ 0.99
CLIP1-215ENST00000541108 STRBPQ96SI9 672 aaKnown RBP21.21■□□□□ 0.99
CLIP1-215ENST00000541108 PSMD1Q99460 953 aa21.21■□□□□ 0.99
CLIP1-215ENST00000541108 ZNF219Q9P2Y4 722 aaPredicted RBP21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms