RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 ZNF853P0CG23 659 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 CTGFP29279 349 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 EXOSC9Q06265 439 aaKnown RBP10.53□□□□□ -0.72
CHD4-208ENST00000540960 TEFQ10587 303 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 TJAP1Q5JTD0 557 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 OTUD7BQ6GQQ9 843 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 B4GALNT3Q6L9W6 998 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 FTSJ3Q8IY81 847 aaKnown RBP10.53□□□□□ -0.72
CHD4-208ENST00000540960 EXOC6Q8TAG9 804 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 UBE2OQ9C0C9 1292 aaKnown RBP10.53□□□□□ -0.72
CHD4-208ENST00000540960 SMC4Q9NTJ3 1288 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 NSFL1CQ9UNZ2 370 aaKnown RBP10.53□□□□□ -0.72
CHD4-208ENST00000540960 CDH23Q9H251 3354 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 NCOR1O75376 2440 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 BDP1A6H8Y1 2624 aa10.53□□□□□ -0.72
CHD4-208ENST00000540960 PSME4Q14997 1843 aa10.52□□□□□ -0.73
CHD4-208ENST00000540960 TESPA1A2RU30 521 aaPredicted RBP10.52□□□□□ -0.73
CHD4-208ENST00000540960 GNAT3A8MTJ3 354 aa10.52□□□□□ -0.73
CHD4-208ENST00000540960 C6orf229H3BNL8 230 aa10.52□□□□□ -0.73
CHD4-208ENST00000540960 USP17L8P0C7I0 530 aa10.52□□□□□ -0.73
CHD4-208ENST00000540960 ARHGEF6Q15052 776 aa10.52□□□□□ -0.73
CHD4-208ENST00000540960 RSBN1LQ6PCB5 846 aaPredicted RBP10.52□□□□□ -0.73
CHD4-208ENST00000540960 TTLL7Q6ZT98 887 aa10.52□□□□□ -0.73
CHD4-208ENST00000540960 ZNF34Q8IZ26 560 aa10.52□□□□□ -0.73
CHD4-208ENST00000540960 CRBNQ96SW2 442 aa10.52□□□□□ -0.73
CHD4-208ENST00000540960 UNC93B1Q9H1C4 597 aa10.52□□□□□ -0.73
CHD4-208ENST00000540960 IBTKQ9P2D0 1353 aaPredicted RBP10.52□□□□□ -0.73
CHD4-208ENST00000540960 CHL1O00533 1208 aa10.51□□□□□ -0.73
CHD4-208ENST00000540960 SGPL1O95470 568 aa10.51□□□□□ -0.73
CHD4-208ENST00000540960 GPSM2P81274 684 aa10.51□□□□□ -0.73
CHD4-208ENST00000540960 LACTBP83111 547 aaPredicted RBP10.51□□□□□ -0.73
CHD4-208ENST00000540960 SLC10A5Q5PT55 438 aa10.51□□□□□ -0.73
CHD4-208ENST00000540960 DZIP1LQ8IYY4 767 aaKnown RBP10.51□□□□□ -0.73
CHD4-208ENST00000540960 AGBL3Q8NEM8 1001 aa10.51□□□□□ -0.73
CHD4-208ENST00000540960 DIS3LQ8TF46 1054 aaKnown RBP10.51□□□□□ -0.73
CHD4-208ENST00000540960 MYLIPQ8WY64 445 aa10.51□□□□□ -0.73
CHD4-208ENST00000540960 FRAT1Q92837 279 aaPredicted RBP10.51□□□□□ -0.73
CHD4-208ENST00000540960 PAWRQ96IZ0 340 aaKnown RBP10.51□□□□□ -0.73
CHD4-208ENST00000540960 API5Q9BZZ5 524 aaKnown RBP10.51□□□□□ -0.73
CHD4-208ENST00000540960 DDX19BQ9UMR2 479 aa10.51□□□□□ -0.73
CHD4-208ENST00000540960 BTBD11A6QL63 1104 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 ERVV-1B6SEH8 477 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 WNT10BO00744 389 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 BCAR3O75815 825 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 HCLS1P14317 486 aaPredicted RBP10.5□□□□□ -0.73
CHD4-208ENST00000540960 GRK4P32298 578 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 GRAPQ13588 217 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 TAF1CQ15572 869 aaPredicted RBP10.5□□□□□ -0.73
CHD4-208ENST00000540960 ATF7IPQ6VMQ6 1270 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 GRAPLQ8TC17 118 aaPredicted RBP10.5□□□□□ -0.73
CHD4-208ENST00000540960 MS4A4AQ96JQ5 239 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 MXD3Q9BW11 206 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 ZBTB3Q9H5J0 574 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 RIPOR2Q9Y4F9 1068 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 LAS1LQ9Y4W2 734 aaKnown RBP10.5□□□□□ -0.73
CHD4-208ENST00000540960 MAP3K15Q6ZN16 1313 aa10.5□□□□□ -0.73
CHD4-208ENST00000540960 PLIN1O60240 522 aa10.49□□□□□ -0.73
CHD4-208ENST00000540960 SNRPA1P09661 255 aaKnown RBP10.49□□□□□ -0.73
CHD4-208ENST00000540960 MAPK8IP2Q13387 824 aaPredicted RBP10.49□□□□□ -0.73
CHD4-208ENST00000540960 MAP3K11Q16584 847 aa10.49□□□□□ -0.73
CHD4-208ENST00000540960 TWISTNBQ3B726 338 aaPredicted RBP10.49□□□□□ -0.73
CHD4-208ENST00000540960 FAM43AQ8N2R8 423 aa10.49□□□□□ -0.73
CHD4-208ENST00000540960 USP38Q8NB14 1042 aa10.49□□□□□ -0.73
CHD4-208ENST00000540960 BRI3BPQ8WY22 251 aa10.49□□□□□ -0.73
CHD4-208ENST00000540960 TSR2Q969E8 191 aaKnown RBP10.49□□□□□ -0.73
CHD4-208ENST00000540960 SEMA6BQ9H3T3 888 aa10.49□□□□□ -0.73
CHD4-208ENST00000540960 ZFYVE28Q9HCC9 887 aa10.49□□□□□ -0.73
CHD4-208ENST00000540960 COL2A1P02458 1487 aaPredicted RBP10.49□□□□□ -0.73
CHD4-208ENST00000540960 MUC6Q6W4X9 2439 aa10.48□□□□□ -0.73
CHD4-208ENST00000540960 SASH1O94885 1247 aa10.48□□□□□ -0.73
CHD4-208ENST00000540960 TFRCP02786 760 aaKnown RBP10.48□□□□□ -0.73
CHD4-208ENST00000540960 ZNF697Q5TEC3 545 aa10.48□□□□□ -0.73
CHD4-208ENST00000540960 DDX46Q7L014 1031 aaKnown RBP10.48□□□□□ -0.73
CHD4-208ENST00000540960 CNKSR2Q8WXI2 1034 aa10.48□□□□□ -0.73
CHD4-208ENST00000540960 CLUAP1Q96AJ1 413 aa10.48□□□□□ -0.73
CHD4-208ENST00000540960 RWDD1Q9H446 243 aaPredicted RBP10.48□□□□□ -0.73
CHD4-208ENST00000540960 MBIPQ9NS73 344 aa10.48□□□□□ -0.73
CHD4-208ENST00000540960 BIN2Q9UBW5 565 aaPredicted RBP10.48□□□□□ -0.73
CHD4-208ENST00000540960 VAMP4O75379 141 aa10.47□□□□□ -0.73
CHD4-208ENST00000540960 MVPQ14764 893 aaKnown RBP10.47□□□□□ -0.73
CHD4-208ENST00000540960 TAF7Q15545 349 aaPredicted RBP10.47□□□□□ -0.73
CHD4-208ENST00000540960 TBC1D16Q8TBP0 767 aa10.47□□□□□ -0.73
CHD4-208ENST00000540960 SSH1Q8WYL5 1049 aa10.47□□□□□ -0.73
CHD4-208ENST00000540960 CELF1Q92879 486 aaKnown RBP10.47□□□□□ -0.73
CHD4-208ENST00000540960 TRIM47Q96LD4 638 aa10.47□□□□□ -0.73
CHD4-208ENST00000540960 SRRDQ9UH36 339 aa10.47□□□□□ -0.73
CHD4-208ENST00000540960 ARIH1Q9Y4X5 557 aaPredicted RBP10.47□□□□□ -0.73
CHD4-208ENST00000540960 OTOFQ9HC10 1997 aa10.46□□□□□ -0.73
CHD4-208ENST00000540960 HOXB7P09629 217 aa10.46□□□□□ -0.73
CHD4-208ENST00000540960 OSBPP22059 807 aa10.46□□□□□ -0.73
CHD4-208ENST00000540960 KIF22Q14807 665 aa10.46□□□□□ -0.73
CHD4-208ENST00000540960 PPP1R42Q7Z4L9 355 aa10.46□□□□□ -0.73
CHD4-208ENST00000540960 RAET1EQ8TD07 263 aa10.46□□□□□ -0.73
CHD4-208ENST00000540960 NECTIN2Q92692 538 aa10.46□□□□□ -0.73
CHD4-208ENST00000540960 DEFB118Q96PH6 123 aa10.46□□□□□ -0.73
CHD4-208ENST00000540960 TSPYL4Q9UJ04 414 aa10.46□□□□□ -0.73
CHD4-208ENST00000540960 PTPRCP08575 1304 aa10.46□□□□□ -0.73
CHD4-208ENST00000540960 TLR2O60603 784 aa10.45□□□□□ -0.74
CHD4-208ENST00000540960 GNRH1P01148 92 aa10.45□□□□□ -0.74
CHD4-208ENST00000540960 PRMT2P55345 433 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms