RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CLIP2Q9UDT6 1046 aa16.14■□□□□ 0.17
USP3-204ENST00000540797 GNA11P29992 359 aa16.14■□□□□ 0.17
USP3-204ENST00000540797 PDE6BP35913 854 aa16.14■□□□□ 0.17
USP3-204ENST00000540797 AFMP43652 599 aa16.14■□□□□ 0.17
USP3-204ENST00000540797 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.14■□□□□ 0.17
USP3-204ENST00000540797 ERLIN1O75477 346 aa16.14■□□□□ 0.17
USP3-204ENST00000540797 KRT2P35908 639 aa16.14■□□□□ 0.17
USP3-204ENST00000540797 CARD10Q9BWT7 1032 aa16.14■□□□□ 0.17
USP3-204ENST00000540797 AK2P54819 239 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 NIM1KQ8IY84 436 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 FAM135BQ49AJ0 1406 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 RXRAP19793 462 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 TRIM47Q96LD4 638 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 ZNF408Q9H9D4 720 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 RBM28Q9NW13 759 aaKnown RBP16.13■□□□□ 0.17
USP3-204ENST00000540797 RPS8P62241 208 aaKnown RBP16.13■□□□□ 0.17
USP3-204ENST00000540797 APPBP2Q92624 585 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 HECW2Q9P2P5 1572 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 NEURL1BA8MQ27 555 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 CCDC129Q6ZRS4 1044 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 RUFY3Q7L099 469 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 ROBO2Q9HCK4 1378 aa16.13■□□□□ 0.17
USP3-204ENST00000540797 MARCKSP29966 332 aaPredicted RBP16.12■□□□□ 0.17
USP3-204ENST00000540797 CERS3Q8IU89 383 aa16.12■□□□□ 0.17
USP3-204ENST00000540797 ERVK-7P63135 1459 aa16.12■□□□□ 0.17
USP3-204ENST00000540797 RRAGBQ5VZM2 374 aa16.12■□□□□ 0.17
USP3-204ENST00000540797 ARHGEF25Q86VW2 580 aa16.12■□□□□ 0.17
USP3-204ENST00000540797 ZNF772Q68DY9 489 aaPredicted RBP16.12■□□□□ 0.17
USP3-204ENST00000540797 AATFQ9NY61 560 aaKnown RBP eCLIP16.12■□□□□ 0.17
USP3-204ENST00000540797 GCC2Q8IWJ2 1684 aa16.12■□□□□ 0.17
USP3-204ENST00000540797 USO1O60763 962 aaKnown RBP16.12■□□□□ 0.17
USP3-204ENST00000540797 TMOD4Q9NZQ9 345 aa16.12■□□□□ 0.17
USP3-204ENST00000540797 ZNF165P49910 485 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 SPATA5Q8NB90 893 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 FERMT2Q96AC1 680 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 ARHGEF10LQ9HCE6 1279 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 ZNF335Q9H4Z2 1342 aaPredicted RBP16.11■□□□□ 0.17
USP3-204ENST00000540797 B4E1Z4 1266 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 PPIP5K2O43314 1243 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 CTSWP56202 376 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 KRT79Q5XKE5 535 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 MRPS27Q92552 414 aaKnown RBP16.11■□□□□ 0.17
USP3-204ENST00000540797 LOC102724428A0A0B4J2F2 783 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 PNMA6EA0A0J9YXQ4 647 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 PTPDC1A2A3K4 754 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 KIF5CO60282 957 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 SIK1P57059 783 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 KDM5AP29375 1690 aaKnown RBP16.11■□□□□ 0.17
USP3-204ENST00000540797 DRC1Q96MC2 740 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 GPCPD1Q9NPB8 672 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 CNPY2Q9Y2B0 182 aa16.11■□□□□ 0.17
USP3-204ENST00000540797 GPAA1O43292 621 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.1■□□□□ 0.171e-7■□□□□ 10.9
USP3-204ENST00000540797 MMRN2Q9H8L6 949 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 USP25Q9UHP3 1055 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 PUF60Q9UHX1 559 aaKnown RBP16.1■□□□□ 0.17
USP3-204ENST00000540797 RXRBP28702 533 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 ASIC1P78348 528 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 TTLL7Q6ZT98 887 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 HOOK2Q96ED9 719 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 USP37Q86T82 979 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 OTUD7AQ8TE49 926 aaPredicted RBP16.1■□□□□ 0.17
USP3-204ENST00000540797 TBC1D22AQ8WUA7 517 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 CENPHQ9H3R5 247 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 BCS1LQ9Y276 419 aa16.1■□□□□ 0.17
USP3-204ENST00000540797 F13A1P00488 732 aa16.09■□□□□ 0.17
USP3-204ENST00000540797 ANKRD62A6NC57 917 aa16.09■□□□□ 0.17
USP3-204ENST00000540797 TMC6Q7Z403 805 aa16.09■□□□□ 0.17
USP3-204ENST00000540797 SPTLC2O15270 562 aa16.08■□□□□ 0.17
USP3-204ENST00000540797 FAM196AQ6ZSG2 479 aa16.08■□□□□ 0.17
USP3-204ENST00000540797 KBTBD3Q8NAB2 608 aa16.08■□□□□ 0.17
USP3-204ENST00000540797 KIF2AO00139 706 aaPredicted RBP16.08■□□□□ 0.17
USP3-204ENST00000540797 MCM7P33993 719 aa16.08■□□□□ 0.17
USP3-204ENST00000540797 AOX1Q06278 1338 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 N4BP3O15049 544 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 CAVIN2O95810 425 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 PTPN14Q15678 1187 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 TMEM87BQ96K49 555 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 ERBB4Q15303 1308 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 PRDM1O75626 825 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 ZAP70P43403 619 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 DLGAP5Q15398 846 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 SNX21Q969T3 373 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 DHX58Q96C10 678 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 TCHPQ9BT92 498 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 ZMYM4Q5VZL5 1548 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 TRIM37O94972 964 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 KRT13P13646 458 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 C2CD5Q86YS7 1000 aa16.08■□□□□ 0.16
USP3-204ENST00000540797 DNA2P51530 1060 aa16.07■□□□□ 0.16
USP3-204ENST00000540797 MTERF4Q7Z6M4 381 aaKnown RBP16.07■□□□□ 0.16
USP3-204ENST00000540797 AATKQ6ZMQ8 1374 aa16.07■□□□□ 0.16
USP3-204ENST00000540797 WDR17Q8IZU2 1322 aa16.07■□□□□ 0.16
USP3-204ENST00000540797 DNM1Q05193 864 aaKnown RBP16.07■□□□□ 0.16
USP3-204ENST00000540797 TCP10Q12799 353 aa16.07■□□□□ 0.16
USP3-204ENST00000540797 KIF4BQ2VIQ3 1234 aa16.07■□□□□ 0.16
USP3-204ENST00000540797 USPL1Q5W0Q7 1092 aa16.07■□□□□ 0.16
USP3-204ENST00000540797 USP26Q9BXU7 913 aa16.07■□□□□ 0.16
USP3-204ENST00000540797 ZYXQ15942 572 aaKnown RBP16.07■□□□□ 0.16
USP3-204ENST00000540797 NLGN1Q8N2Q7 840 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms