RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 TAOK3Q9H2K8 898 aa12.91□□□□□ -0.34
VPS33A-204ENST00000540669 ZBTB12Q9Y330 459 aaPredicted RBP12.91□□□□□ -0.34
VPS33A-204ENST00000540669 ADAMTSL1Q8N6G6 1762 aa12.9□□□□□ -0.34
VPS33A-204ENST00000540669 UQCRFS1P1P0C7P4 283 aa12.9□□□□□ -0.34
VPS33A-204ENST00000540669 TICAM2Q86XR7 235 aa12.9□□□□□ -0.34
VPS33A-204ENST00000540669 EYA3Q99504 573 aa12.9□□□□□ -0.34
VPS33A-204ENST00000540669 COA1Q9GZY4 146 aa12.9□□□□□ -0.34
VPS33A-204ENST00000540669 CD209Q9NNX6 404 aa12.9□□□□□ -0.34
VPS33A-204ENST00000540669 HMG20BQ9P0W2 317 aa12.9□□□□□ -0.34
VPS33A-204ENST00000540669 DDX60LQ5H9U9 1706 aaKnown RBP12.89□□□□□ -0.35
VPS33A-204ENST00000540669 IGSF3O75054 1194 aa12.89□□□□□ -0.35
VPS33A-204ENST00000540669 HIBADHP31937 336 aaKnown RBP12.89□□□□□ -0.35
VPS33A-204ENST00000540669 KCNJ4P48050 445 aa12.89□□□□□ -0.35
VPS33A-204ENST00000540669 PI16Q6UXB8 463 aa12.89□□□□□ -0.35
VPS33A-204ENST00000540669 ARHGAP27Q6ZUM4 889 aa12.89□□□□□ -0.35
VPS33A-204ENST00000540669 ZNF804AQ7Z570 1209 aa12.89□□□□□ -0.35
VPS33A-204ENST00000540669 GPATCH3Q96I76 525 aa12.89□□□□□ -0.35
VPS33A-204ENST00000540669 NEUROD6Q96NK8 337 aa12.89□□□□□ -0.35
VPS33A-204ENST00000540669 YDJCA8MPS7 323 aa12.88□□□□□ -0.35
VPS33A-204ENST00000540669 C6orf229H3BNL8 230 aa12.88□□□□□ -0.35
VPS33A-204ENST00000540669 ERC2O15083 957 aa12.88□□□□□ -0.35
VPS33A-204ENST00000540669 IARSP41252 1262 aaKnown RBP12.88□□□□□ -0.35
VPS33A-204ENST00000540669 RASSF7Q02833 373 aa12.88□□□□□ -0.35
VPS33A-204ENST00000540669 AOC3Q16853 763 aa12.88□□□□□ -0.35
VPS33A-204ENST00000540669 WASHC4Q2M389 1173 aa12.88□□□□□ -0.35
VPS33A-204ENST00000540669 CCDC158Q5M9N0 1113 aa12.88□□□□□ -0.35
VPS33A-204ENST00000540669 PODNQ7Z5L7 613 aa12.88□□□□□ -0.35
VPS33A-204ENST00000540669 CDK5RAP2Q96SN8 1893 aa12.88□□□□□ -0.35
VPS33A-204ENST00000540669 FOCADQ5VW36 1801 aa12.88□□□□□ -0.35
VPS33A-204ENST00000540669 CYP2E1P05181 493 aaPredicted RBP12.87□□□□□ -0.35
VPS33A-204ENST00000540669 FKBP1AP62942 108 aaKnown RBP12.87□□□□□ -0.35
VPS33A-204ENST00000540669 CAVIN4Q5BKX8 364 aa12.87□□□□□ -0.35
VPS33A-204ENST00000540669 SPATA5Q8NB90 893 aa12.87□□□□□ -0.35
VPS33A-204ENST00000540669 ZNF277Q9NRM2 450 aaPredicted RBP12.87□□□□□ -0.35
VPS33A-204ENST00000540669 ZBTB47Q9UFB7 747 aaPredicted RBP12.87□□□□□ -0.35
VPS33A-204ENST00000540669 ECM29Q5VYK3 1845 aa12.87□□□□□ -0.35
VPS33A-204ENST00000540669 PPIP5K2O43314 1243 aa12.86□□□□□ -0.35
VPS33A-204ENST00000540669 ECE2O60344 883 aa12.86□□□□□ -0.35
VPS33A-204ENST00000540669 SDSP20132 328 aa12.86□□□□□ -0.35
VPS33A-204ENST00000540669 ZAP70P43403 619 aa12.86□□□□□ -0.35
VPS33A-204ENST00000540669 RGS3P49796 1198 aa12.86□□□□□ -0.35
VPS33A-204ENST00000540669 TTC39AQ5SRH9 613 aa12.86□□□□□ -0.35
VPS33A-204ENST00000540669 KBTBD3Q8NAB2 608 aa12.86□□□□□ -0.35
VPS33A-204ENST00000540669 ZNF384Q8TF68 577 aa12.86□□□□□ -0.35
VPS33A-204ENST00000540669 ZC3H12CQ9C0D7 883 aaKnown RBP12.86□□□□□ -0.35
VPS33A-204ENST00000540669 DENND2AQ9ULE3 1009 aa12.86□□□□□ -0.35
VPS33A-204ENST00000540669 ZC3H4Q9UPT8 1303 aaKnown RBP12.86□□□□□ -0.35
VPS33A-204ENST00000540669 FZD9O00144 591 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 LMNB1P20700 586 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 DACT2Q5SW24 774 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 TMED8Q6PL24 325 aaPredicted RBP12.85□□□□□ -0.35
VPS33A-204ENST00000540669 CERS5Q8N5B7 392 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 EDC3Q96F86 508 aaKnown RBP12.85□□□□□ -0.35
VPS33A-204ENST00000540669 GMLQ99445 158 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 BOLA2Q9H3K6 86 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 ANTXR1Q9H6X2 564 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 PIH1D3Q9NQM4 214 aaKnown RBP12.85□□□□□ -0.35
VPS33A-204ENST00000540669 SNRKQ9NRH2 765 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 GNL3LQ9NVN8 582 aaKnown RBP12.85□□□□□ -0.35
VPS33A-204ENST00000540669 PAG1Q9NWQ8 432 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 NDUFB9Q9Y6M9 179 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 MYH2Q9UKX2 1941 aa12.85□□□□□ -0.35
VPS33A-204ENST00000540669 MKRN4PQ13434 485 aaPredicted RBP12.84□□□□□ -0.35
VPS33A-204ENST00000540669 GORABQ5T7V8 394 aa12.84□□□□□ -0.35
VPS33A-204ENST00000540669 STRIP1Q5VSL9 837 aa12.84□□□□□ -0.35
VPS33A-204ENST00000540669 WDR90Q96KV7 1748 aa12.84□□□□□ -0.35
VPS33A-204ENST00000540669 LAMA4Q16363 1823 aa12.83□□□□□ -0.35
VPS33A-204ENST00000540669 TCRBV5S4A2TA0A5A2 114 aa12.83□□□□□ -0.36
VPS33A-204ENST00000540669 RIMBP2O15034 1052 aa12.83□□□□□ -0.36
VPS33A-204ENST00000540669 WDR66Q8TBY9 1149 aa12.83□□□□□ -0.36
VPS33A-204ENST00000540669 EVI5LQ96CN4 794 aa12.83□□□□□ -0.36
VPS33A-204ENST00000540669 DBNDD1Q9H9R9 158 aa12.83□□□□□ -0.36
VPS33A-204ENST00000540669 ZNRF3Q9ULT6 936 aa12.83□□□□□ -0.36
VPS33A-204ENST00000540669 IQSEC3Q9UPP2 1182 aaPredicted RBP12.83□□□□□ -0.36
VPS33A-204ENST00000540669 SUGT1Q9Y2Z0 365 aa12.83□□□□□ -0.36
VPS33A-204ENST00000540669 GOLIM4O00461 696 aa12.82□□□□□ -0.36
VPS33A-204ENST00000540669 VIL1P09327 827 aaKnown RBP12.82□□□□□ -0.36
VPS33A-204ENST00000540669 GRIK5Q16478 980 aa12.82□□□□□ -0.36
VPS33A-204ENST00000540669 DOK7Q18PE1 504 aa12.82□□□□□ -0.36
VPS33A-204ENST00000540669 LARGE2Q8N3Y3 721 aa12.82□□□□□ -0.36
VPS33A-204ENST00000540669 TBC1D22AQ8WUA7 517 aa12.82□□□□□ -0.36
VPS33A-204ENST00000540669 KCNQ5Q9NR82 932 aa12.82□□□□□ -0.36
VPS33A-204ENST00000540669 GAKO14976 1311 aa12.82□□□□□ -0.36
VPS33A-204ENST00000540669 PRDX5P30044 214 aa12.81□□□□□ -0.36
VPS33A-204ENST00000540669 TTF1Q15361 905 aaPredicted RBP12.81□□□□□ -0.36
VPS33A-204ENST00000540669 C8orf34Q49A92 452 aa12.81□□□□□ -0.36
VPS33A-204ENST00000540669 VPS37DQ86XT2 251 aa12.81□□□□□ -0.36
VPS33A-204ENST00000540669 NIM1KQ8IY84 436 aa12.81□□□□□ -0.36
VPS33A-204ENST00000540669 CNTROBQ8N137 903 aa12.81□□□□□ -0.36
VPS33A-204ENST00000540669 DNAJC2Q99543 621 aaKnown RBP12.81□□□□□ -0.36
VPS33A-204ENST00000540669 RNF181Q9P0P0 153 aa12.81□□□□□ -0.36
VPS33A-204ENST00000540669 MYO3BQ8WXR4 1341 aa12.81□□□□□ -0.36
VPS33A-204ENST00000540669 ZNF541Q9H0D2 1346 aa12.81□□□□□ -0.36
VPS33A-204ENST00000540669 SCN4AP35499 1836 aa12.81□□□□□ -0.36
VPS33A-204ENST00000540669 LAMB1P07942 1786 aa12.8□□□□□ -0.36
VPS33A-204ENST00000540669 USP17L3A6NCW0 530 aa12.8□□□□□ -0.36
VPS33A-204ENST00000540669 USP17L4A6NCW7 530 aa12.8□□□□□ -0.36
VPS33A-204ENST00000540669 ADD2P35612 726 aa12.8□□□□□ -0.36
VPS33A-204ENST00000540669 GTF2IP78347 998 aa12.8□□□□□ -0.36
VPS33A-204ENST00000540669 CXCL9Q07325 125 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms