RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 LINC00301Q8NCQ3 95 aa11.27□□□□□ -0.61
CDH13-204ENST00000539548 KIAA1468Q9P260 1216 aa11.27□□□□□ -0.61
CDH13-204ENST00000539548 ZHX1Q9UKY1 873 aaPredicted RBP11.27□□□□□ -0.61
CDH13-204ENST00000539548 CCDC9Q9Y3X0 531 aaKnown RBP11.27□□□□□ -0.61
CDH13-204ENST00000539548 MEGF6O75095 1541 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 ALS2Q96Q42 1657 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 A0A087WWV3 80 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 YEATS4O95619 227 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 IFIT1P09914 478 aaKnown RBP11.26□□□□□ -0.61
CDH13-204ENST00000539548 KIF18AQ8NI77 898 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 KCNG4Q8TDN1 519 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 POLR3EQ9NVU0 708 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 NAP1L2Q9ULW6 460 aaPredicted RBP11.26□□□□□ -0.61
CDH13-204ENST00000539548 COL18A1P39060 1754 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 A0A1B0GVL5 298 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 EYA2O00167 538 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 DHX16O60231 1041 aaKnown RBP11.26□□□□□ -0.61
CDH13-204ENST00000539548 CIAO1O76071 339 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 NDUFA8P51970 172 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 STK38Q15208 465 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 CHST3Q7LGC8 479 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 RGS22Q8NE09 1264 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 ZNF397Q8NF99 534 aaPredicted RBP11.26□□□□□ -0.61
CDH13-204ENST00000539548 ERO1AQ96HE7 468 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 ATG3Q9NT62 314 aa11.26□□□□□ -0.61
CDH13-204ENST00000539548 ZNF215Q9UL58 517 aaPredicted RBP11.26□□□□□ -0.61
CDH13-204ENST00000539548 M0R2C6 588 aa11.25□□□□□ -0.61
CDH13-204ENST00000539548 CYP27B1O15528 508 aa11.25□□□□□ -0.61
CDH13-204ENST00000539548 KCNJ6P48051 423 aa11.25□□□□□ -0.61
CDH13-204ENST00000539548 GABPB1Q06547 395 aaPredicted RBP11.25□□□□□ -0.61
CDH13-204ENST00000539548 SF3A1Q15459 793 aaKnown RBP11.25□□□□□ -0.61
CDH13-204ENST00000539548 LRRFIP1Q32MZ4 808 aaKnown RBP11.25□□□□□ -0.61
CDH13-204ENST00000539548 BRAPQ7Z569 592 aa11.25□□□□□ -0.61
CDH13-204ENST00000539548 FBXO18Q8NFZ0 1043 aa11.25□□□□□ -0.61
CDH13-204ENST00000539548 CWC25Q9NXE8 425 aaPredicted RBP11.25□□□□□ -0.61
CDH13-204ENST00000539548 PKD1L3Q7Z443 1732 aa11.25□□□□□ -0.61
CDH13-204ENST00000539548 NWD2Q9ULI1 1742 aa11.25□□□□□ -0.61
CDH13-204ENST00000539548 GLI3P10071 1580 aa11.25□□□□□ -0.61
CDH13-204ENST00000539548 TJP1Q07157 1748 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 NUP188Q5SRE5 1749 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.24□□□□□ -0.61
CDH13-204ENST00000539548 NBPF26B4DH59 902 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 CABP4P57796 275 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 NLRP12P59046 1061 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 ZRSR1Q15695 479 aaKnown RBP11.24□□□□□ -0.61
CDH13-204ENST00000539548 NBPF14Q5TI25 921 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 TTLL5Q6EMB2 1281 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 NBPF10Q6P3W6 841 aaKnown RBP11.24□□□□□ -0.61
CDH13-204ENST00000539548 NBPF15Q8N660 670 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 CCDC150Q8NCX0 1101 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 ERCC4Q92889 916 aaPredicted RBP11.24□□□□□ -0.61
CDH13-204ENST00000539548 C8orf76Q96K31 380 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 TRMT1Q9NXH9 659 aaKnown RBP11.24□□□□□ -0.61
CDH13-204ENST00000539548 CLIC4Q9Y696 253 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 A0A1B0GUL7 405 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 PSDA5PKW4 1024 aaPredicted RBP11.24□□□□□ -0.61
CDH13-204ENST00000539548 SPTLC2O15270 562 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 SLU7O95391 586 aaKnown RBP11.24□□□□□ -0.61
CDH13-204ENST00000539548 TUBB4AP04350 444 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 LRRC24Q50LG9 513 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 OSBP2Q969R2 916 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 NEDD4P46934 1319 aa11.24□□□□□ -0.61
CDH13-204ENST00000539548 DDX60Q8IY21 1712 aaKnown RBP11.24□□□□□ -0.61
CDH13-204ENST00000539548 PPFIA3O75145 1194 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 ZFYP08048 801 aaPredicted RBP11.23□□□□□ -0.61
CDH13-204ENST00000539548 SLC3A2P08195 630 aaKnown RBP11.23□□□□□ -0.61
CDH13-204ENST00000539548 TPM4P67936 248 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 IMMTQ16891 758 aaKnown RBP11.23□□□□□ -0.61
CDH13-204ENST00000539548 DPCR1Q3MIW9 517 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 MYSM1Q5VVJ2 828 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 E4F1Q66K89 784 aaPredicted RBP11.23□□□□□ -0.61
CDH13-204ENST00000539548 CCDC191Q8NCU4 936 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 XPO4Q9C0E2 1151 aaKnown RBP11.23□□□□□ -0.61
CDH13-204ENST00000539548 FAM53CQ9NYF3 392 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 HPS5Q9UPZ3 1129 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 C1orf167Q5SNV9 1468 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 ZNF202O95125 648 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 POLR3DP05423 398 aaPredicted RBP11.23□□□□□ -0.61
CDH13-204ENST00000539548 CMA1P23946 247 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 KMT5BQ4FZB7 885 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 OTUD7BQ6GQQ9 843 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 ARMCX5Q6P1M9 558 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 SYNE3Q6ZMZ3 975 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 MB21D2Q8IYB1 491 aaPredicted RBP11.23□□□□□ -0.61
CDH13-204ENST00000539548 L2HGDHQ9H9P8 463 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 GPHNQ9NQX3 736 aaPredicted RBP11.23□□□□□ -0.61
CDH13-204ENST00000539548 IFNKQ9P0W0 207 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 ORC3Q9UBD5 711 aaPredicted RBP11.23□□□□□ -0.61
CDH13-204ENST00000539548 WDR19Q8NEZ3 1342 aa11.23□□□□□ -0.61
CDH13-204ENST00000539548 KLF18A0A0U1RQI7 1052 aa11.22□□□□□ -0.61
CDH13-204ENST00000539548 IKBKBO14920 756 aa11.22□□□□□ -0.61
CDH13-204ENST00000539548 FOXP2O15409 715 aa11.22□□□□□ -0.61
CDH13-204ENST00000539548 PRC1O43663 620 aa11.22□□□□□ -0.61
CDH13-204ENST00000539548 NCAPHQ15003 741 aa11.22□□□□□ -0.61
CDH13-204ENST00000539548 AXDND1Q5T1B0 1012 aaPredicted RBP11.22□□□□□ -0.61
CDH13-204ENST00000539548 ANO1Q5XXA6 986 aa11.22□□□□□ -0.61
CDH13-204ENST00000539548 TTLL7Q6ZT98 887 aa11.22□□□□□ -0.61
CDH13-204ENST00000539548 FBXW7Q969H0 707 aa11.22□□□□□ -0.61
CDH13-204ENST00000539548 ZNF594Q96JF6 807 aaPredicted RBP11.22□□□□□ -0.61
CDH13-204ENST00000539548 TIGD1Q96MW7 591 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms