RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 FAM200AQ8TCP9 573 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 POM121Q96HA1 1249 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 NLRP3Q96P20 1036 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 CCDC85AQ96PX6 553 aaPredicted RBP7.93□□□□□ -1.14
USP28-207ENST00000538475 SRCIN1Q9C0H9 1055 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 IFT57Q9NWB7 429 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 GEMIN8Q9NWZ8 242 aaKnown RBP7.93□□□□□ -1.14
USP28-207ENST00000538475 NSFL1CQ9UNZ2 370 aaKnown RBP7.93□□□□□ -1.14
USP28-207ENST00000538475 DOLKQ9UPQ8 538 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 ZFYVE16Q7Z3T8 1539 aa7.93□□□□□ -1.14
USP28-207ENST00000538475 SETD1AO15047 1707 aaKnown RBP7.92□□□□□ -1.14
USP28-207ENST00000538475 VAMP4O75379 141 aa7.92□□□□□ -1.14
USP28-207ENST00000538475 SDSP20132 328 aa7.92□□□□□ -1.14
USP28-207ENST00000538475 KCNJ6P48051 423 aa7.92□□□□□ -1.14
USP28-207ENST00000538475 NEK4P51957 841 aa7.92□□□□□ -1.14
USP28-207ENST00000538475 RBM6P78332 1123 aaKnown RBP7.92□□□□□ -1.14
USP28-207ENST00000538475 GPS2Q13227 327 aa7.92□□□□□ -1.14
USP28-207ENST00000538475 SIRT2Q8IXJ6 389 aa7.92□□□□□ -1.14
USP28-207ENST00000538475 KDF1Q8NAX2 398 aaPredicted RBP7.92□□□□□ -1.14
USP28-207ENST00000538475 TSR2Q969E8 191 aaKnown RBP7.92□□□□□ -1.14
USP28-207ENST00000538475 ZNF830Q96NB3 372 aaPredicted RBP7.92□□□□□ -1.14
USP28-207ENST00000538475 BRMS1Q9HCU9 246 aa7.92□□□□□ -1.14
USP28-207ENST00000538475 CWC15Q9P013 229 aaKnown RBP7.92□□□□□ -1.14
USP28-207ENST00000538475 EVC2Q86UK5 1308 aa7.92□□□□□ -1.14
USP28-207ENST00000538475 A0A1W2PRU2 124 aa7.91□□□□□ -1.14
USP28-207ENST00000538475 ZSCAN22P10073 491 aaPredicted RBP7.91□□□□□ -1.14
USP28-207ENST00000538475 TNNT1P13805 278 aa7.91□□□□□ -1.14
USP28-207ENST00000538475 INSM1Q01101 510 aaPredicted RBP7.91□□□□□ -1.14
USP28-207ENST00000538475 PTSQ03393 145 aa7.91□□□□□ -1.14
USP28-207ENST00000538475 USP4Q13107 963 aa7.91□□□□□ -1.14
USP28-207ENST00000538475 AXDND1Q5T1B0 1012 aaPredicted RBP7.91□□□□□ -1.14
USP28-207ENST00000538475 RNF217Q8TC41 542 aa7.91□□□□□ -1.14
USP28-207ENST00000538475 CDCA7Q9BWT1 371 aaPredicted RBP7.91□□□□□ -1.14
USP28-207ENST00000538475 KCNF1Q9H3M0 494 aa7.91□□□□□ -1.14
USP28-207ENST00000538475 C14orf93Q9H972 538 aaKnown RBP7.91□□□□□ -1.14
USP28-207ENST00000538475 STK17AQ9UEE5 414 aa7.91□□□□□ -1.14
USP28-207ENST00000538475 SPAG9O60271 1321 aaKnown RBP7.91□□□□□ -1.14
USP28-207ENST00000538475 ADGRL3Q9HAR2 1447 aa7.91□□□□□ -1.14
USP28-207ENST00000538475 MROH1Q8NDA8 1641 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 LRRC7Q96NW7 1537 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 ATP10DQ9P241 1426 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 PTPRCP08575 1304 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 CCP110O43303 1012 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 WIPF1O43516 503 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 PPFIA3O75145 1194 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 ZNF853P0CG23 659 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 HCLS1P14317 486 aaPredicted RBP7.9□□□□□ -1.14
USP28-207ENST00000538475 MMP14P50281 582 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 OXLD1Q5BKU9 147 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 EFCAB2Q5VUJ9 269 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 SARM1Q6SZW1 724 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 RBM43Q6ZSC3 357 aaKnown RBP7.9□□□□□ -1.14
USP28-207ENST00000538475 LYSMD3Q7Z3D4 306 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 TDRD7Q8NHU6 1098 aaKnown RBP7.9□□□□□ -1.14
USP28-207ENST00000538475 ZSCAN31Q96LW9 406 aaPredicted RBP7.9□□□□□ -1.14
USP28-207ENST00000538475 ARID3AQ99856 593 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 NOL10Q9BSC4 688 aaKnown RBP7.9□□□□□ -1.14
USP28-207ENST00000538475 SRRTQ9BXP5 876 aaKnown RBP7.9□□□□□ -1.14
USP28-207ENST00000538475 ARGLU1Q9NWB6 273 aaPredicted RBP7.9□□□□□ -1.14
USP28-207ENST00000538475 PSD3Q9NYI0 1048 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 PYCARDQ9ULZ3 195 aa7.9□□□□□ -1.14
USP28-207ENST00000538475 CRYBG1Q9Y4K1 1723 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 PIK3C2BO00750 1634 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 NEXMIFQ5QGS0 1516 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 DIAPH1O60610 1272 aaKnown RBP7.89□□□□□ -1.15
USP28-207ENST00000538475 SLU7O95391 586 aaKnown RBP7.89□□□□□ -1.15
USP28-207ENST00000538475 TSGA10IPQ3SY00 556 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 SLC27A3Q5K4L6 730 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 FOXD4L5Q5VV16 416 aaPredicted RBP7.89□□□□□ -1.15
USP28-207ENST00000538475 CEP135Q66GS9 1140 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 PRICKLE2Q7Z3G6 844 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 PLA2G4DQ86XP0 818 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 PHTF2Q8N3S3 785 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 GOLGA6L1Q8N7Z2 621 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 SIRT1Q96EB6 747 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 MRFAP1L1Q96HT8 127 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 ESYT1Q9BSJ8 1104 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 ARHGEF10LQ9HCE6 1279 aa7.89□□□□□ -1.15
USP28-207ENST00000538475 DDX19AQ9NUU7 478 aaKnown RBP7.89□□□□□ -1.15
USP28-207ENST00000538475 ARHGEF40Q8TER5 1519 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 TULP4Q9NRJ4 1543 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 KIAA0232Q92628 1395 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 F13A1P00488 732 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 GNRH1P01148 92 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 H2AFXP16104 143 aaPredicted RBP7.88□□□□□ -1.15
USP28-207ENST00000538475 RNF144AP50876 292 aaPredicted RBP7.88□□□□□ -1.15
USP28-207ENST00000538475 GSDMDP57764 484 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 NFE2L2Q16236 605 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 MAP3K11Q16584 847 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 NOM1Q5C9Z4 860 aaKnown RBP7.88□□□□□ -1.15
USP28-207ENST00000538475 CFAP70Q5T0N1 1121 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 ZSCAN25Q6NSZ9 544 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 FILIP1Q7Z7B0 1213 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 MSL3Q8N5Y2 521 aaKnown RBP7.88□□□□□ -1.15
USP28-207ENST00000538475 CCDC155Q8N6L0 562 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 IQUBQ8NA54 791 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 RASSF4Q9H2L5 321 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 L2HGDHQ9H9P8 463 aa7.88□□□□□ -1.15
USP28-207ENST00000538475 SH2B1Q9NRF2 756 aaPredicted RBP7.88□□□□□ -1.15
USP28-207ENST00000538475 RAB6BQ9NRW1 208 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms