RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 INTS3Q68E01 1043 aaKnown RBP8.65□□□□□ -1.02
MSH6-209ENST00000538136 USP48Q86UV5 1035 aa8.65□□□□□ -1.02
MSH6-209ENST00000538136 RUFY2Q8WXA3 655 aa8.65□□□□□ -1.02
MSH6-209ENST00000538136 PCDHAC2Q9Y5I4 1007 aa8.65□□□□□ -1.02
MSH6-209ENST00000538136 ATP2B4P23634 1241 aa8.65□□□□□ -1.02
MSH6-209ENST00000538136 CPXCR1Q8N123 301 aa8.65□□□□□ -1.02
MSH6-209ENST00000538136 FAM227BQ96M60 508 aa8.65□□□□□ -1.02
MSH6-209ENST00000538136 CD209Q9NNX6 404 aa8.65□□□□□ -1.02
MSH6-209ENST00000538136 ANGEL1Q9UNK9 670 aaKnown RBP8.65□□□□□ -1.02
MSH6-209ENST00000538136 GDF11O95390 407 aa8.65□□□□□ -1.03
MSH6-209ENST00000538136 SCARF1Q14162 830 aa8.65□□□□□ -1.03
MSH6-209ENST00000538136 SPATA5Q8NB90 893 aa8.65□□□□□ -1.03
MSH6-209ENST00000538136 DBNLQ9UJU6 430 aaKnown RBP8.65□□□□□ -1.03
MSH6-209ENST00000538136 CPA1P15085 419 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 SYNE3Q6ZMZ3 975 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 LDHCP07864 332 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 CXCL9Q07325 125 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 ANGEL2Q5VTE6 544 aaKnown RBP8.64□□□□□ -1.03
MSH6-209ENST00000538136 SUPT20HQ8NEM7 779 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 TEKT1Q969V4 418 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 GCC1Q96CN9 775 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 PAGR1Q9BTK6 254 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 HOMER2Q9NSB8 354 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 USP17L3A6NCW0 530 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 USP17L4A6NCW7 530 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 PRKAB2O43741 272 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 AKAP17AQ02040 695 aaKnown RBP8.64□□□□□ -1.03
MSH6-209ENST00000538136 USP17L1Q7RTZ2 530 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 ARHGAP45Q92619 1136 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 GGA3Q9NZ52 723 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 ERBB4Q15303 1308 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 CEMIPQ8WUJ3 1361 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 MAGEB6P1A0A0J9YX57 407 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 TRIM75PA6NK02 468 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 YBX3P16989 372 aaKnown RBP eCLIP8.64□□□□□ -1.031e-10■■□□□ 13.6
MSH6-209ENST00000538136 LMNB1P20700 586 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 RASGRF1Q13972 1273 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 TNIP1Q15025 636 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 CFAP100Q494V2 611 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 MOB2Q70IA6 237 aa8.64□□□□□ -1.03
MSH6-209ENST00000538136 FAM47AQ5JRC9 791 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 GLIS2Q9BZE0 524 aaPredicted RBP8.63□□□□□ -1.03
MSH6-209ENST00000538136 XRN1Q8IZH2 1706 aaKnown RBP8.63□□□□□ -1.03
MSH6-209ENST00000538136 BTDP43251 543 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 NEK4P51957 841 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 PDE1AP54750 535 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 NBPF9Q3BBW0 867 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 DDX11Q96FC9 970 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 UBAC1Q9BSL1 405 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 ZNF532Q9HCE3 1301 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 hCG_1642624A0A1W2PR95 340 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 HLA-DOAP06340 250 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 CSRNP1Q96S65 589 aa8.63□□□□□ -1.03
MSH6-209ENST00000538136 RASSF8Q8NHQ8 419 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 CABP5Q9NP86 173 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 INCENPQ9NQS7 918 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 BSDC1Q9NW68 430 aaPredicted RBP8.62□□□□□ -1.03
MSH6-209ENST00000538136 ATP6V0A2Q9Y487 856 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 USP17L12C9JPN9 530 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 USP17L21D6R901 530 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 UBE2Q2LH0YL09 131 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 TRAF5O00463 557 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 UQCRFS1P1P0C7P4 283 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 POTEIP0CG38 1075 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 POTEJP0CG39 1038 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 CCT2P78371 535 aaKnown RBP8.62□□□□□ -1.03
MSH6-209ENST00000538136 SMCR8Q8TEV9 937 aaPredicted RBP8.62□□□□□ -1.03
MSH6-209ENST00000538136 FOXO4P98177 505 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 SP4Q02446 784 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 SPTY2D1Q68D10 685 aaPredicted RBP8.62□□□□□ -1.03
MSH6-209ENST00000538136 JAKMIP1Q96N16 626 aaKnown RBP8.62□□□□□ -1.03
MSH6-209ENST00000538136 CRNKL1Q9BZJ0 848 aaKnown RBP8.62□□□□□ -1.03
MSH6-209ENST00000538136 ZNRF3Q9ULT6 936 aa8.62□□□□□ -1.03
MSH6-209ENST00000538136 SORBS3O60504 671 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 CELF2O95319 508 aaKnown RBP8.61□□□□□ -1.03
MSH6-209ENST00000538136 SDSP20132 328 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 GUCY1B3Q02153 619 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 CTDSPL2Q05D32 466 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 MICU3Q86XE3 530 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 SIRT2Q8IXJ6 389 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 FAM84BQ96KN1 310 aaPredicted RBP8.61□□□□□ -1.03
MSH6-209ENST00000538136 DENND2AQ9ULE3 1009 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 ITSN1Q15811 1721 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 ZNF213O14771 459 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 PPP1R12BO60237 982 aaPredicted RBP8.61□□□□□ -1.03
MSH6-209ENST00000538136 RAB11FIP3O75154 756 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 NMIQ13287 307 aaPredicted RBP8.61□□□□□ -1.03
MSH6-209ENST00000538136 GADL1Q6ZQY3 521 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 CLEC10AQ8IUN9 316 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 SLC44A5Q8NCS7 719 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 HMG20BQ9P0W2 317 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 FMN2Q9NZ56 1722 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 ZNF142P52746 1687 aaPredicted RBP8.61□□□□□ -1.03
MSH6-209ENST00000538136 ZNF521Q96K83 1311 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 HUNKP57058 714 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 CEBPZQ03701 1054 aaKnown RBP8.61□□□□□ -1.03
MSH6-209ENST00000538136 WDR66Q8TBY9 1149 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 DYNLL2Q96FJ2 89 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 NRKQ7Z2Y5 1582 aa8.61□□□□□ -1.03
MSH6-209ENST00000538136 CEP350Q5VT06 3117 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms