RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-206ENST00000536429 MYO3BQ8WXR4 1341 aa16.4■□□□□ 0.22
PRKDC-206ENST00000536429 F8W031 263 aaPredicted RBP16.39■□□□□ 0.21
PRKDC-206ENST00000536429 SASH1O94885 1247 aa16.39■□□□□ 0.21
PRKDC-206ENST00000536429 ANGEL2Q5VTE6 544 aaKnown RBP16.39■□□□□ 0.21
PRKDC-206ENST00000536429 CDC37L1Q7L3B6 337 aa16.39■□□□□ 0.21
PRKDC-206ENST00000536429 KRT26Q7Z3Y9 468 aa16.39■□□□□ 0.21
PRKDC-206ENST00000536429 FBXO3Q9UK99 471 aa16.39■□□□□ 0.21
PRKDC-206ENST00000536429 FAM205AQ6ZU69 1335 aa16.39■□□□□ 0.21
PRKDC-206ENST00000536429 CELF2O95319 508 aaKnown RBP16.38■□□□□ 0.21
PRKDC-206ENST00000536429 IL15P40933 162 aaPredicted RBP16.38■□□□□ 0.21
PRKDC-206ENST00000536429 GRIK5Q16478 980 aa16.38■□□□□ 0.21
PRKDC-206ENST00000536429 VPS37DQ86XT2 251 aa16.38■□□□□ 0.21
PRKDC-206ENST00000536429 LPIN2Q92539 896 aa16.38■□□□□ 0.21
PRKDC-206ENST00000536429 YTHDC1Q96MU7 727 aaKnown RBP16.38■□□□□ 0.21
PRKDC-206ENST00000536429 CEP126Q9P2H0 1117 aa16.38■□□□□ 0.21
PRKDC-206ENST00000536429 WNT10BO00744 389 aa16.37■□□□□ 0.21
PRKDC-206ENST00000536429 IFIT1P09914 478 aaKnown RBP16.37■□□□□ 0.21
PRKDC-206ENST00000536429 ADORA1P30542 326 aa16.37■□□□□ 0.21
PRKDC-206ENST00000536429 CHAF1AQ13111 956 aaPredicted RBP16.37■□□□□ 0.21
PRKDC-206ENST00000536429 ATP2B3Q16720 1220 aa16.37■□□□□ 0.21
PRKDC-206ENST00000536429 CAVIN4Q5BKX8 364 aa16.37■□□□□ 0.21
PRKDC-206ENST00000536429 OGFOD1Q8N543 542 aa16.37■□□□□ 0.21
PRKDC-206ENST00000536429 DCPSQ96C86 337 aaKnown RBP16.37■□□□□ 0.21
PRKDC-206ENST00000536429 ZBED3Q96IU2 234 aaPredicted RBP16.37■□□□□ 0.21
PRKDC-206ENST00000536429 ZNF408Q9H9D4 720 aa16.37■□□□□ 0.21
PRKDC-206ENST00000536429 AOX1Q06278 1338 aa16.37■□□□□ 0.21
PRKDC-206ENST00000536429 CNTNAP1P78357 1384 aa16.37■□□□□ 0.21
PRKDC-206ENST00000536429 SLC5A1P13866 664 aa16.36■□□□□ 0.21
PRKDC-206ENST00000536429 FKBP1AP62942 108 aaKnown RBP16.36■□□□□ 0.21
PRKDC-206ENST00000536429 TFCP2Q12800 502 aa16.36■□□□□ 0.21
PRKDC-206ENST00000536429 POLA2Q14181 598 aa16.36■□□□□ 0.21
PRKDC-206ENST00000536429 MFSD14BQ5SR56 506 aa16.36■□□□□ 0.21
PRKDC-206ENST00000536429 C20orf194Q5TEA3 1177 aa16.36■□□□□ 0.21
PRKDC-206ENST00000536429 ABT1Q9ULW3 272 aaKnown RBP16.36■□□□□ 0.21
PRKDC-206ENST00000536429 ATP8B2P98198 1209 aa16.35■□□□□ 0.21
PRKDC-206ENST00000536429 JMYQ8N9B5 988 aa16.35■□□□□ 0.21
PRKDC-206ENST00000536429 HDAC9Q9UKV0 1011 aa16.35■□□□□ 0.21
PRKDC-206ENST00000536429 COG6Q9Y2V7 657 aa16.35■□□□□ 0.21
PRKDC-206ENST00000536429 COL1A1P02452 1464 aaPredicted RBP16.35■□□□□ 0.21
PRKDC-206ENST00000536429 RASSF10A6NK89 507 aa16.34■□□□□ 0.21
PRKDC-206ENST00000536429 VEGFBP49765 207 aa16.34■□□□□ 0.21
PRKDC-206ENST00000536429 TIMM10P62072 90 aa16.34■□□□□ 0.21
PRKDC-206ENST00000536429 CFAP100Q494V2 611 aa16.34■□□□□ 0.21
PRKDC-206ENST00000536429 PRAMEF18Q5VWM3 479 aa16.34■□□□□ 0.21
PRKDC-206ENST00000536429 SULF1Q8IWU6 871 aa16.34■□□□□ 0.21
PRKDC-206ENST00000536429 SSH3Q8TE77 659 aa16.34■□□□□ 0.21
PRKDC-206ENST00000536429 FRAT2O75474 233 aaPredicted RBP16.33■□□□□ 0.2
PRKDC-206ENST00000536429 PHKA1P46020 1223 aa16.33■□□□□ 0.2
PRKDC-206ENST00000536429 MVPQ14764 893 aaKnown RBP16.33■□□□□ 0.2
PRKDC-206ENST00000536429 CEP85Q6P2H3 762 aa16.33■□□□□ 0.2
PRKDC-206ENST00000536429 CDCA5Q96FF9 252 aa16.33■□□□□ 0.2
PRKDC-206ENST00000536429 TLL2Q9Y6L7 1015 aa16.33■□□□□ 0.2
PRKDC-206ENST00000536429 A0A1B0GUL7 405 aa16.32■□□□□ 0.2
PRKDC-206ENST00000536429 DLGAP5Q15398 846 aa16.32■□□□□ 0.2
PRKDC-206ENST00000536429 DEFB115Q30KQ5 88 aa16.32■□□□□ 0.2
PRKDC-206ENST00000536429 SAPCD2Q86UD0 394 aa16.32■□□□□ 0.2
PRKDC-206ENST00000536429 MTMR14Q8NCE2 650 aa16.32■□□□□ 0.2
PRKDC-206ENST00000536429 PRMT6Q96LA8 375 aaPredicted RBP16.32■□□□□ 0.2
PRKDC-206ENST00000536429 PITPNM2Q9BZ72 1349 aa16.32■□□□□ 0.2
PRKDC-206ENST00000536429 TTF2Q9UNY4 1162 aaKnown RBP16.32■□□□□ 0.2
PRKDC-206ENST00000536429 SPDYE2BA6NHP3 402 aa16.31■□□□□ 0.2
PRKDC-206ENST00000536429 SPDYE6P0CI01 402 aa16.31■□□□□ 0.2
PRKDC-206ENST00000536429 MMP14P50281 582 aa16.31■□□□□ 0.2
PRKDC-206ENST00000536429 G3BP1Q13283 466 aaKnown RBP eCLIP16.31■□□□□ 0.2
PRKDC-206ENST00000536429 CYP4F22Q6NT55 531 aa16.31■□□□□ 0.2
PRKDC-206ENST00000536429 POLR2AP24928 1970 aaKnown RBP16.3■□□□□ 0.2
PRKDC-206ENST00000536429 CLRN2A0PK11 232 aa16.3■□□□□ 0.2
PRKDC-206ENST00000536429 MS4A1P11836 297 aa16.3■□□□□ 0.2
PRKDC-206ENST00000536429 CCDC102BQ68D86 513 aa16.3■□□□□ 0.2
PRKDC-206ENST00000536429 XAGE2Q96GT9 111 aa16.3■□□□□ 0.2
PRKDC-206ENST00000536429 SURF6O75683 361 aaKnown RBP16.29■□□□□ 0.2
PRKDC-206ENST00000536429 CRKP46108 304 aa16.29■□□□□ 0.2
PRKDC-206ENST00000536429 RBM5P52756 815 aaKnown RBP eCLIP16.29■□□□□ 0.2
PRKDC-206ENST00000536429 GRM1Q13255 1194 aa16.29■□□□□ 0.2
PRKDC-206ENST00000536429 PAXIP1Q6ZW49 1069 aaPredicted RBP16.29■□□□□ 0.2
PRKDC-206ENST00000536429 TBC1D22AQ8WUA7 517 aa16.29■□□□□ 0.2
PRKDC-206ENST00000536429 GBA2Q9HCG7 927 aaPredicted RBP16.29■□□□□ 0.2
PRKDC-206ENST00000536429 ZBTB40Q9NUA8 1239 aa16.29■□□□□ 0.2
PRKDC-206ENST00000536429 WDR33Q9C0J8 1336 aaKnown RBP16.28■□□□□ 0.2
PRKDC-206ENST00000536429 RASGRF1Q13972 1273 aa16.28■□□□□ 0.2
PRKDC-206ENST00000536429 MOB2Q70IA6 237 aa16.28■□□□□ 0.2
PRKDC-206ENST00000536429 CAPNS2Q96L46 248 aa16.28■□□□□ 0.2
PRKDC-206ENST00000536429 NEUROD6Q96NK8 337 aa16.28■□□□□ 0.2
PRKDC-206ENST00000536429 SERPINA10Q9UK55 444 aa16.28■□□□□ 0.2
PRKDC-206ENST00000536429 DDX19BQ9UMR2 479 aa16.28■□□□□ 0.2
PRKDC-206ENST00000536429 AKAP2Q9Y2D5 859 aa16.28■□□□□ 0.2
PRKDC-206ENST00000536429 NOP58Q9Y2X3 529 aaKnown RBP16.28■□□□□ 0.2
PRKDC-206ENST00000536429 TRPM7Q96QT4 1865 aa16.28■□□□□ 0.2
PRKDC-206ENST00000536429 PRDX5P30044 214 aa16.27■□□□□ 0.2
PRKDC-206ENST00000536429 HUNKP57058 714 aa16.27■□□□□ 0.2
PRKDC-206ENST00000536429 OS9Q13438 667 aaPredicted RBP16.27■□□□□ 0.2
PRKDC-206ENST00000536429 PDE3AQ14432 1141 aa16.27■□□□□ 0.2
PRKDC-206ENST00000536429 APOBEC3FQ8IUX4 373 aaKnown RBP16.27■□□□□ 0.2
PRKDC-206ENST00000536429 SIRT2Q8IXJ6 389 aa16.27■□□□□ 0.2
PRKDC-206ENST00000536429 VEZTQ9HBM0 779 aa16.27■□□□□ 0.2
PRKDC-206ENST00000536429 GNL3LQ9NVN8 582 aaKnown RBP16.27■□□□□ 0.2
PRKDC-206ENST00000536429 AOC2O75106 756 aa16.26■□□□□ 0.19
PRKDC-206ENST00000536429 HSPA1AP0DMV8 641 aaKnown RBP16.26■□□□□ 0.19
PRKDC-206ENST00000536429 HSPA1BP0DMV9 641 aaKnown RBP16.26■□□□□ 0.19
PRKDC-206ENST00000536429 TNNI3KQ59H18 835 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms