RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 PPP4R2Q9NY27 417 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 FAM8A1Q9UBU6 413 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 PARP2Q9UGN5 583 aa6.59□□□□□ -1.35
CD44-233ENST00000531141 TMEM238LA0A1B0GVL6 79 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 GDF11O95390 407 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 ZNF16P17020 682 aaPredicted RBP6.58□□□□□ -1.36
CD44-233ENST00000531141 EIF4BP23588 611 aaKnown RBP6.58□□□□□ -1.36
CD44-233ENST00000531141 PIP4K2BP78356 416 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 DAB2P98082 770 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 PRRT3Q5FWE3 981 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 TRAPPC3LQ5T215 181 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 NXPE4Q6UWF7 544 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 ADAMTSL4Q6UY14 1074 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 FMR1NBQ8N0W7 255 aaPredicted RBP6.58□□□□□ -1.36
CD44-233ENST00000531141 OSBPL7Q9BZF2 842 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 CLEC4MQ9H2X3 399 aaPredicted RBP6.58□□□□□ -1.36
CD44-233ENST00000531141 ZNF576Q9H609 170 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 ZFYVE1Q9HBF4 777 aa6.58□□□□□ -1.36
CD44-233ENST00000531141 A0A0A0MRY4 1105 aa6.57□□□□□ -1.36
CD44-233ENST00000531141 FCGRTP55899 365 aa6.57□□□□□ -1.36
CD44-233ENST00000531141 RASSF7Q02833 373 aa6.57□□□□□ -1.36
CD44-233ENST00000531141 RPS26P11Q5JNZ5 115 aaPredicted RBP6.57□□□□□ -1.36
CD44-233ENST00000531141 VN1R5Q7Z5H4 357 aa6.57□□□□□ -1.36
CD44-233ENST00000531141 DMRTC2Q8IXT2 367 aaPredicted RBP6.57□□□□□ -1.36
CD44-233ENST00000531141 MRS2Q9HD23 443 aa6.57□□□□□ -1.36
CD44-233ENST00000531141 SH2B1Q9NRF2 756 aaPredicted RBP6.57□□□□□ -1.36
CD44-233ENST00000531141 PPM1HQ9ULR3 514 aa6.57□□□□□ -1.36
CD44-233ENST00000531141 EIF4EBP3O60516 100 aaPredicted RBP6.56□□□□□ -1.36
CD44-233ENST00000531141 USP17L7P0C7H9 530 aa6.56□□□□□ -1.36
CD44-233ENST00000531141 SPATA31C1P0DKV0 1188 aa6.56□□□□□ -1.36
CD44-233ENST00000531141 ELNP15502 786 aa6.56□□□□□ -1.36
CD44-233ENST00000531141 TAGLNQ01995 201 aaKnown RBP6.56□□□□□ -1.36
CD44-233ENST00000531141 PCDH1Q08174 1060 aa6.56□□□□□ -1.36
CD44-233ENST00000531141 IKBKEQ14164 716 aa6.56□□□□□ -1.36
CD44-233ENST00000531141 SPRED3Q2MJR0 410 aa6.56□□□□□ -1.36
CD44-233ENST00000531141 DTHD1Q6ZMT9 781 aa6.56□□□□□ -1.36
CD44-233ENST00000531141 C3orf58Q8NDZ4 430 aa6.56□□□□□ -1.36
CD44-233ENST00000531141 SOX17Q9H6I2 414 aaPredicted RBP6.56□□□□□ -1.36
CD44-233ENST00000531141 AK5Q9Y6K8 562 aa6.56□□□□□ -1.36
CD44-233ENST00000531141 SORBS3O60504 671 aa6.55□□□□□ -1.36
CD44-233ENST00000531141 B3GALT4O96024 378 aa6.55□□□□□ -1.36
CD44-233ENST00000531141 ESRRAP11474 423 aaPredicted RBP6.55□□□□□ -1.36
CD44-233ENST00000531141 TRIM28Q13263 835 aaKnown RBP6.55□□□□□ -1.36
CD44-233ENST00000531141 SETDB1Q15047 1291 aa6.55□□□□□ -1.36
CD44-233ENST00000531141 FBXO11Q86XK2 927 aa6.55□□□□□ -1.36
CD44-233ENST00000531141 KLHL23Q8NBE8 558 aa6.55□□□□□ -1.36
CD44-233ENST00000531141 ANKRD24Q8TF21 1146 aa6.55□□□□□ -1.36
CD44-233ENST00000531141 FOXD4L4Q8WXT5 416 aaPredicted RBP6.55□□□□□ -1.36
CD44-233ENST00000531141 CRELD1Q96HD1 420 aa6.55□□□□□ -1.36
CD44-233ENST00000531141 OSGEPQ9NPF4 335 aa6.55□□□□□ -1.36
CD44-233ENST00000531141 LINC01387J3KSC0 135 aa6.54□□□□□ -1.36
CD44-233ENST00000531141 FSCN2O14926 492 aa6.54□□□□□ -1.36
CD44-233ENST00000531141 DEAF1O75398 565 aaPredicted RBP6.54□□□□□ -1.36
CD44-233ENST00000531141 COL8A1P27658 744 aa6.54□□□□□ -1.36
CD44-233ENST00000531141 ARL4DP49703 201 aa6.54□□□□□ -1.36
CD44-233ENST00000531141 TXNDC11Q6PKC3 985 aa6.54□□□□□ -1.36
CD44-233ENST00000531141 SEC31BQ9NQW1 1179 aa6.54□□□□□ -1.36
CD44-233ENST00000531141 RNF19AQ9NV58 838 aa6.54□□□□□ -1.36
CD44-233ENST00000531141 VTI1BQ9UEU0 232 aa6.54□□□□□ -1.36
CD44-233ENST00000531141 FAM229AH3BQW9 127 aa6.53□□□□□ -1.36
CD44-233ENST00000531141 CDC25BP30305 580 aa6.53□□□□□ -1.36
CD44-233ENST00000531141 C19orf57Q0VDD7 668 aa6.53□□□□□ -1.36
CD44-233ENST00000531141 MRPL58Q14197 206 aaKnown RBP6.53□□□□□ -1.36
CD44-233ENST00000531141 DDX54Q8TDD1 881 aaKnown RBP6.53□□□□□ -1.36
CD44-233ENST00000531141 FAM161BQ96MY7 647 aa6.53□□□□□ -1.36
CD44-233ENST00000531141 NACC1Q96RE7 527 aa6.53□□□□□ -1.36
CD44-233ENST00000531141 DLL1O00548 723 aa6.52□□□□□ -1.37
CD44-233ENST00000531141 SLC7A3Q8WY07 619 aa6.52□□□□□ -1.37
CD44-233ENST00000531141 CARD10Q9BWT7 1032 aa6.52□□□□□ -1.37
CD44-233ENST00000531141 GPN3Q9UHW5 284 aaPredicted RBP6.52□□□□□ -1.37
CD44-233ENST00000531141 TTF2Q9UNY4 1162 aaKnown RBP6.52□□□□□ -1.37
CD44-233ENST00000531141 AKAP2Q9Y2D5 859 aa6.52□□□□□ -1.37
CD44-233ENST00000531141 APBA3O96018 575 aa6.51□□□□□ -1.37
CD44-233ENST00000531141 VAMP1P23763 118 aa6.51□□□□□ -1.37
CD44-233ENST00000531141 CD68P34810 354 aaPredicted RBP6.51□□□□□ -1.37
CD44-233ENST00000531141 ST13P50502 369 aaKnown RBP6.51□□□□□ -1.37
CD44-233ENST00000531141 FAAP100Q0VG06 881 aa6.51□□□□□ -1.37
CD44-233ENST00000531141 FOXD4L6Q3SYB3 417 aaPredicted RBP6.51□□□□□ -1.37
CD44-233ENST00000531141 FOXD4L3Q6VB84 417 aaPredicted RBP6.51□□□□□ -1.37
CD44-233ENST00000531141 GALNT11Q8NCW6 608 aa6.51□□□□□ -1.37
CD44-233ENST00000531141 CEP44Q9C0F1 390 aa6.51□□□□□ -1.37
CD44-233ENST00000531141 SOX1O00570 391 aaPredicted RBP6.5□□□□□ -1.37
CD44-233ENST00000531141 TM4SF5O14894 197 aa6.5□□□□□ -1.37
CD44-233ENST00000531141 PPP2R3AQ06190 1150 aa6.5□□□□□ -1.37
CD44-233ENST00000531141 AP3B2Q13367 1082 aa6.5□□□□□ -1.37
CD44-233ENST00000531141 ZNF423Q2M1K9 1284 aa6.5□□□□□ -1.37
CD44-233ENST00000531141 TPTE2Q6XPS3 522 aa6.5□□□□□ -1.37
CD44-233ENST00000531141 MRPL18Q9H0U6 180 aaKnown RBP6.5□□□□□ -1.37
CD44-233ENST00000531141 TMEM39AQ9NV64 488 aa6.5□□□□□ -1.37
CD44-233ENST00000531141 CTSHP09668 335 aa6.49□□□□□ -1.37
CD44-233ENST00000531141 IGF2-ASQ6U949 168 aa6.49□□□□□ -1.37
CD44-233ENST00000531141 KLHDC7BQ96G42 594 aa6.49□□□□□ -1.37
CD44-233ENST00000531141 DCAF5Q96JK2 942 aa6.49□□□□□ -1.37
CD44-233ENST00000531141 NRSN2Q9GZP1 204 aa6.49□□□□□ -1.37
CD44-233ENST00000531141 ADAM11O75078 769 aa6.48□□□□□ -1.37
CD44-233ENST00000531141 IGHA1P01876 353 aa6.48□□□□□ -1.37
CD44-233ENST00000531141 NLRP12P59046 1061 aa6.48□□□□□ -1.37
CD44-233ENST00000531141 HNRNPUQ00839 825 aaKnown RBP eCLIP6.48□□□□□ -1.37
CD44-233ENST00000531141 NRG1Q02297 640 aaPredicted RBP6.48□□□□□ -1.37
CD44-233ENST00000531141 GSTM4Q03013 218 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms