RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 APOBEC3FQ8IUX4 373 aaKnown RBP8.39□□□□□ -1.07
CD44-221ENST00000526000 WWC1Q8IX03 1113 aa8.39□□□□□ -1.07
CD44-221ENST00000526000 CD99L2Q8TCZ2 262 aa8.39□□□□□ -1.07
CD44-221ENST00000526000 ZBED3Q96IU2 234 aaPredicted RBP8.39□□□□□ -1.07
CD44-221ENST00000526000 CHMP4AQ9BY43 222 aa8.39□□□□□ -1.07
CD44-221ENST00000526000 LRRC37AA6NMS7 1700 aa8.38□□□□□ -1.07
CD44-221ENST00000526000 MYO3BQ8WXR4 1341 aa8.38□□□□□ -1.07
CD44-221ENST00000526000 IGF2BP3O00425 579 aaKnown RBP eCLIP8.38□□□□□ -1.07
CD44-221ENST00000526000 PPP1R12BO60237 982 aaPredicted RBP8.38□□□□□ -1.07
CD44-221ENST00000526000 GJA5P36382 358 aa8.38□□□□□ -1.07
CD44-221ENST00000526000 FOXO4P98177 505 aa8.38□□□□□ -1.07
CD44-221ENST00000526000 EXOSC9Q06265 439 aaKnown RBP8.38□□□□□ -1.07
CD44-221ENST00000526000 IFIT5Q13325 482 aaKnown RBP8.38□□□□□ -1.07
CD44-221ENST00000526000 RASA3Q14644 834 aa8.38□□□□□ -1.07
CD44-221ENST00000526000 PRPF38BQ5VTL8 546 aaKnown RBP8.38□□□□□ -1.07
CD44-221ENST00000526000 WNK4Q96J92 1243 aa8.38□□□□□ -1.07
CD44-221ENST00000526000 PLA2G12BQ9BX93 195 aa8.38□□□□□ -1.07
CD44-221ENST00000526000 MYH16Q9H6N6 1097 aa8.38□□□□□ -1.07
CD44-221ENST00000526000 TDRD3Q9H7E2 651 aaKnown RBP8.38□□□□□ -1.07
CD44-221ENST00000526000 ELP3Q9H9T3 547 aa8.38□□□□□ -1.07
CD44-221ENST00000526000 CNNM1Q9NRU3 951 aa8.38□□□□□ -1.07
CD44-221ENST00000526000 IQSEC3Q9UPP2 1182 aaPredicted RBP8.38□□□□□ -1.07
CD44-221ENST00000526000 PDE4DIPQ5VU43 2346 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 MANSC4A6NHS7 340 aaPredicted RBP8.37□□□□□ -1.07
CD44-221ENST00000526000 TCP10L2B9ZVM9 353 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 VAMP4O75379 141 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 EN2P19622 333 aaPredicted RBP8.37□□□□□ -1.07
CD44-221ENST00000526000 GYG1P46976 350 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 SUPT20HL1Q3ZLR7 823 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 SLC4A10Q6U841 1118 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 LDHAL6AQ6ZMR3 332 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 OTOP1Q7RTM1 612 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 CDAN1Q8IWY9 1227 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 LINS1Q8NG48 757 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 CNKSR2Q8WXI2 1034 aa8.37□□□□□ -1.07
CD44-221ENST00000526000 PUS3Q9BZE2 481 aaKnown RBP8.37□□□□□ -1.07
CD44-221ENST00000526000 SPDYE2BA6NHP3 402 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 MYO1BO43795 1136 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 SPDYE6P0CI01 402 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 CAP1Q01518 475 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 CHAF1AQ13111 956 aaPredicted RBP8.36□□□□□ -1.07
CD44-221ENST00000526000 CRHR2Q13324 411 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 GRIK5Q16478 980 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 CCDC57Q2TAC2 916 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 BEND3Q5T5X7 828 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 ZNF804AQ7Z570 1209 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 PTPN18Q99952 460 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 ZNF70Q9UC06 446 aaPredicted RBP8.36□□□□□ -1.07
CD44-221ENST00000526000 TTF2Q9UNY4 1162 aaKnown RBP8.36□□□□□ -1.07
CD44-221ENST00000526000 AKAP11Q9UKA4 1901 aa8.36□□□□□ -1.07
CD44-221ENST00000526000 ALDH1A1P00352 501 aa8.35□□□□□ -1.07
CD44-221ENST00000526000 HIBADHP31937 336 aaKnown RBP8.35□□□□□ -1.07
CD44-221ENST00000526000 IREB2P48200 963 aaKnown RBP8.35□□□□□ -1.07
CD44-221ENST00000526000 CACNB3P54284 484 aa8.35□□□□□ -1.07
CD44-221ENST00000526000 INHBEP58166 350 aa8.35□□□□□ -1.07
CD44-221ENST00000526000 OPTNQ96CV9 577 aa8.35□□□□□ -1.07
CD44-221ENST00000526000 EFCC1Q9HA90 598 aa8.35□□□□□ -1.07
CD44-221ENST00000526000 SPINK5Q9NQ38 1064 aaPredicted RBP8.35□□□□□ -1.07
CD44-221ENST00000526000 C9orf78Q9NZ63 289 aaPredicted RBP8.35□□□□□ -1.07
CD44-221ENST00000526000 PCDH10Q9P2E7 1040 aa8.35□□□□□ -1.07
CD44-221ENST00000526000 PTPN22Q9Y2R2 807 aa8.35□□□□□ -1.07
CD44-221ENST00000526000 PAPPA2Q9BXP8 1791 aa8.35□□□□□ -1.07
CD44-221ENST00000526000 FANCIQ9NVI1 1328 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 IRS2Q9Y4H2 1338 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 FRAT2O75474 233 aaPredicted RBP8.34□□□□□ -1.07
CD44-221ENST00000526000 IL1R1P14778 569 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 SP3Q02447 781 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 MAP3K11Q16584 847 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 MFSD14BQ5SR56 506 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 OTUD7BQ6GQQ9 843 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 DZIP1LQ8IYY4 767 aaKnown RBP8.34□□□□□ -1.07
CD44-221ENST00000526000 MTMR14Q8NCE2 650 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 ERO1AQ96HE7 468 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 SUCLG2Q96I99 432 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 FAM84BQ96KN1 310 aaPredicted RBP8.34□□□□□ -1.07
CD44-221ENST00000526000 TMEM39BQ9GZU3 492 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 MRS2Q9HD23 443 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 ZNF609O15014 1411 aa8.34□□□□□ -1.07
CD44-221ENST00000526000 CCL15-CCL14A0A0B4J2E2 113 aa8.33□□□□□ -1.08
CD44-221ENST00000526000 GRM8O00222 908 aa8.33□□□□□ -1.08
CD44-221ENST00000526000 ZBTB48P10074 688 aaPredicted RBP8.33□□□□□ -1.08
CD44-221ENST00000526000 MMP14P50281 582 aa8.33□□□□□ -1.08
CD44-221ENST00000526000 MAP3K9P80192 1104 aa8.33□□□□□ -1.08
CD44-221ENST00000526000 CCL15Q16663 113 aa8.33□□□□□ -1.08
CD44-221ENST00000526000 CCDC27Q2M243 656 aa8.33□□□□□ -1.08
CD44-221ENST00000526000 NOM1Q5C9Z4 860 aaKnown RBP8.33□□□□□ -1.08
CD44-221ENST00000526000 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.33□□□□□ -1.08
CD44-221ENST00000526000 C15orf52Q6ZUT6 534 aaKnown RBP8.33□□□□□ -1.08
CD44-221ENST00000526000 ANKRD13AQ8IZ07 590 aa8.33□□□□□ -1.08
CD44-221ENST00000526000 TDRD7Q8NHU6 1098 aaKnown RBP8.33□□□□□ -1.08
CD44-221ENST00000526000 BRI3BPQ8WY22 251 aa8.33□□□□□ -1.08
CD44-221ENST00000526000 OTUD5Q96G74 571 aa8.33□□□□□ -1.08
CD44-221ENST00000526000 CRKP46108 304 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 BCAMP50895 628 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 TAF1CQ15572 869 aaPredicted RBP8.32□□□□□ -1.08
CD44-221ENST00000526000 SLC4A8Q2Y0W8 1093 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 SPDYE2Q495Y8 402 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 LRRC24Q50LG9 513 aa8.32□□□□□ -1.08
CD44-221ENST00000526000 HABP4Q5JVS0 413 aaKnown RBP8.32□□□□□ -1.08
CD44-221ENST00000526000 MIGA2Q7L4E1 593 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms