RNA–Protein interactions for RNA: ENST00000524033.5

SPIDR-223, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 1,023 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-223	ENST00000524033	SRGN	P10124	158 aa		9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	MCM5	P33992	734 aa		9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	HSP90AA2P	Q14568	343 aa	Predicted RBP	9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	STYK1	Q6J9G0	422 aa		9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	KIAA1211	Q6ZU35	1233 aa		9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	PARP9	Q8IXQ6	854 aa		9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	CNKSR1	Q969H4	720 aa		9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	TMX3	Q96JJ7	454 aa		9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	NIP7	Q9Y221	180 aa	Known RBP eCLIP	9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	ZKSCAN5	Q9Y2L8	839 aa		9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	ADGRG1	Q9Y653	693 aa		9.43	□□□□□ -0.9
SPIDR-223	ENST00000524033	RPAP1	Q9BWH6	1393 aa	Predicted RBP	9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	FAM205C	A6NFA0	338 aa		9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	GLTPD2	A6NH11	291 aa		9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	NFKBIE	O00221	500 aa		9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	VEGFA	P15692	232 aa	Predicted RBP	9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	GTF2E1	P29083	439 aa	Predicted RBP	9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	PRELP	P51888	382 aa		9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	G2E3	Q7L622	706 aa		9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	TMEM87A	Q8NBN3	555 aa		9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	MASTL	Q96GX5	879 aa		9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	NSFL1C	Q9UNZ2	370 aa	Known RBP	9.42	□□□□□ -0.9
SPIDR-223	ENST00000524033	ZC3H4	Q9UPT8	1303 aa	Known RBP	9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	FAM177B	A6PVY3	158 aa		9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	CHML	P26374	656 aa		9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	EIF4A1	P60842	406 aa	Known RBP	9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	FSTL1	Q12841	308 aa		9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	HLF	Q16534	295 aa		9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	ERFE	Q4G0M1	354 aa		9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	SOGA3	Q5TF21	947 aa		9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	PRPF40B	Q6NWY9	871 aa	Known RBP	9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	GIGYF2	Q6Y7W6	1299 aa	Known RBP	9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	METTL3	Q86U44	580 aa	Known RBP	9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	ANP32B	Q92688	251 aa	Known RBP	9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	GPCPD1	Q9NPB8	672 aa		9.41	□□□□□ -0.9
SPIDR-223	ENST00000524033	KIF13B	Q9NQT8	1826 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	KLRG2	A4D1S0	409 aa	Predicted RBP	9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	ERVV-1	B6SEH8	477 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	PRPF40A	O75400	957 aa	Known RBP	9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	GNAI2	P04899	355 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	MYL6B	P14649	208 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	NPR1	P16066	1061 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	MSN	P26038	577 aa	Known RBP	9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	ATP8B2	P98198	1209 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	GLIPR1L2	Q4G1C9	344 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	DNAJC5G	Q8N7S2	189 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	NLRP7	Q8WX94	980 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	PNMA3	Q9UL41	463 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	PALD1	Q9ULE6	856 aa		9.4	□□□□□ -0.9
SPIDR-223	ENST00000524033	KIAA1551	Q9HCM1	1747 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	TRIM6-TRIM34	B2RNG4	842 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	KIF6	Q6ZMV9	814 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	NUDT18	Q6ZVK8	323 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	SMC1B	Q8NDV3	1235 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	PXYLP1	Q8TE99	480 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	C7orf43	Q8WVR3	580 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	SRCIN1	Q9C0H9	1055 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	NYX	Q9GZU5	481 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	PDCL3	Q9H2J4	239 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	TAOK3	Q9H2K8	898 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	BABAM1	Q9NWV8	329 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	CCDC39	Q9UFE4	941 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	TSPYL4	Q9UJ04	414 aa		9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033	SIPA1L3	O60292	1781 aa	Predicted RBP	9.39	□□□□□ -0.91
SPIDR-223	ENST00000524033		F6X3S4	739 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	ARHGAP33	O14559	1287 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	GNAI3	P08754	354 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	MX1	P20591	662 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	MCC	P23508	829 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	ALDH1B1	P30837	517 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	PSEN2	P49810	448 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	PROX2	Q3B8N5	592 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	TTLL7	Q6ZT98	887 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	CHAMP1	Q96JM3	812 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	FAM117A	Q9C073	453 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	LRRCC1	Q9C099	1032 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	ZBTB3	Q9H5J0	574 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	TSKS	Q9UJT2	592 aa		9.38	□□□□□ -0.91
SPIDR-223	ENST00000524033	MAP3K15	Q6ZN16	1313 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	LTBP3	Q9NS15	1303 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	PNMA6E	A0A0J9YXQ4	647 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	SYCE3	A1L190	88 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	EIF2S2	P20042	333 aa	Known RBP	9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	HSPA4	P34932	840 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	NEK4	P51957	841 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	HTRA3	P83110	453 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	CSPP1	Q1MSJ5	1256 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	UVSSA	Q2YD98	709 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	NUTM1	Q86Y26	1132 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	RTKN2	Q8IZC4	609 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	TTC13	Q8NBP0	860 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	SSH3	Q8TE77	659 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	TTC14	Q96N46	770 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	MAP7D2	Q96T17	732 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	TSPY26P	Q9H489	355 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	EXOC6B	Q9Y2D4	811 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	UBR2	Q8IWV8	1755 aa		9.37	□□□□□ -0.91
SPIDR-223	ENST00000524033	RAD50	Q92878	1312 aa		9.36	□□□□□ -0.91
SPIDR-223	ENST00000524033	POTEC	B2RU33	542 aa		9.36	□□□□□ -0.91
SPIDR-223	ENST00000524033	NCL	P19338	710 aa	Known RBP	9.36	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms