RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 GYG1P46976 350 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 BCAMP50895 628 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 RASGRF1Q13972 1273 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 SCARF1Q14162 830 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 CCDC93Q567U6 631 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 ZNF804AQ7Z570 1209 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 VPS37DQ86XT2 251 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 EYA3Q99504 573 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 DNAJC2Q99543 621 aaKnown RBP15.85■□□□□ 0.13
CPNE3-205ENST00000522240 RTFDC1Q9BY42 306 aaPredicted RBP15.85■□□□□ 0.13
CPNE3-205ENST00000522240 PAG1Q9NWQ8 432 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 POLLQ9UGP5 575 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 MAST2Q6P0Q8 1798 aa15.85■□□□□ 0.13
CPNE3-205ENST00000522240 COL1A1P02452 1464 aaPredicted RBP15.84■□□□□ 0.13
CPNE3-205ENST00000522240 MYH7P12883 1935 aa15.84■□□□□ 0.13
CPNE3-205ENST00000522240 WTIPA6NIX2 430 aaPredicted RBP15.84■□□□□ 0.13
CPNE3-205ENST00000522240 HIP1O00291 1037 aa15.84■□□□□ 0.13
CPNE3-205ENST00000522240 MAP4K4O95819 1239 aaPredicted RBP15.84■□□□□ 0.13
CPNE3-205ENST00000522240 TTF1Q15361 905 aaPredicted RBP15.84■□□□□ 0.13
CPNE3-205ENST00000522240 TBC1D9Q6ZT07 1266 aa15.84■□□□□ 0.13
CPNE3-205ENST00000522240 KBTBD3Q8NAB2 608 aa15.84■□□□□ 0.13
CPNE3-205ENST00000522240 NLGN2Q8NFZ4 835 aa15.84■□□□□ 0.13
CPNE3-205ENST00000522240 HMG20BQ9P0W2 317 aa15.84■□□□□ 0.13
CPNE3-205ENST00000522240 C6orf229H3BNL8 230 aa15.83■□□□□ 0.12
CPNE3-205ENST00000522240 ZAP70P43403 619 aa15.83■□□□□ 0.12
CPNE3-205ENST00000522240 SPATA5Q8NB90 893 aa15.83■□□□□ 0.12
CPNE3-205ENST00000522240 SUPT20HQ8NEM7 779 aa15.83■□□□□ 0.12
CPNE3-205ENST00000522240 FSD1Q9BTV5 496 aa15.83■□□□□ 0.12
CPNE3-205ENST00000522240 DENND2AQ9ULE3 1009 aa15.83■□□□□ 0.12
CPNE3-205ENST00000522240 FER1L6Q2WGJ9 1857 aa15.82■□□□□ 0.12
CPNE3-205ENST00000522240 GOLIM4O00461 696 aa15.82■□□□□ 0.12
CPNE3-205ENST00000522240 CHMLP26374 656 aa15.82■□□□□ 0.12
CPNE3-205ENST00000522240 FKBP4Q02790 459 aaKnown RBP eCLIP15.82■□□□□ 0.12
CPNE3-205ENST00000522240 LRRFIP1Q32MZ4 808 aaKnown RBP15.82■□□□□ 0.12
CPNE3-205ENST00000522240 DALRD3Q5D0E6 543 aaKnown RBP15.82■□□□□ 0.12
CPNE3-205ENST00000522240 OLFM4Q6UX06 510 aa15.82■□□□□ 0.12
CPNE3-205ENST00000522240 TXNRD3Q86VQ6 643 aa15.82■□□□□ 0.12
CPNE3-205ENST00000522240 RTKN2Q8IZC4 609 aa15.82■□□□□ 0.12
CPNE3-205ENST00000522240 EDC3Q96F86 508 aaKnown RBP15.82■□□□□ 0.12
CPNE3-205ENST00000522240 PSMD1Q99460 953 aa15.82■□□□□ 0.12
CPNE3-205ENST00000522240 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.82■□□□□ 0.12
CPNE3-205ENST00000522240 CIZ1Q9ULV3 898 aaPredicted RBP15.82■□□□□ 0.12
CPNE3-205ENST00000522240 C21orf2O43822 256 aa15.81■□□□□ 0.12
CPNE3-205ENST00000522240 IGSF3O75054 1194 aa15.81■□□□□ 0.12
CPNE3-205ENST00000522240 PI16Q6UXB8 463 aa15.81■□□□□ 0.12
CPNE3-205ENST00000522240 TDRD7Q8NHU6 1098 aaKnown RBP15.81■□□□□ 0.12
CPNE3-205ENST00000522240 BBXQ8WY36 941 aaPredicted RBP15.81■□□□□ 0.12
CPNE3-205ENST00000522240 RAD50Q92878 1312 aa15.81■□□□□ 0.12
CPNE3-205ENST00000522240 COA1Q9GZY4 146 aa15.81■□□□□ 0.12
CPNE3-205ENST00000522240 NDUFB9Q9Y6M9 179 aa15.81■□□□□ 0.12
CPNE3-205ENST00000522240 CYP2E1P05181 493 aaPredicted RBP15.8■□□□□ 0.12
CPNE3-205ENST00000522240 IL1R1P14778 569 aa15.8■□□□□ 0.12
CPNE3-205ENST00000522240 YBX3P16989 372 aaKnown RBP eCLIP15.8■□□□□ 0.125e-6■■■■□ 19.4
CPNE3-205ENST00000522240 GPR101Q96P66 508 aaPredicted RBP15.8■□□□□ 0.12
CPNE3-205ENST00000522240 ZC3H12CQ9C0D7 883 aaKnown RBP15.8■□□□□ 0.12
CPNE3-205ENST00000522240 SNRKQ9NRH2 765 aa15.8■□□□□ 0.12
CPNE3-205ENST00000522240 DIAPH3Q9NSV4 1193 aa15.8■□□□□ 0.12
CPNE3-205ENST00000522240 SALL1Q9NSC2 1324 aa15.79■□□□□ 0.12
CPNE3-205ENST00000522240 ZFYP08048 801 aaPredicted RBP15.79■□□□□ 0.12
CPNE3-205ENST00000522240 WASHC4Q2M389 1173 aa15.79■□□□□ 0.12
CPNE3-205ENST00000522240 RUFY2Q8WXA3 655 aa15.79■□□□□ 0.12
CPNE3-205ENST00000522240 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.79■□□□□ 0.12
CPNE3-205ENST00000522240 VPS33BQ9H267 617 aa15.79■□□□□ 0.12
CPNE3-205ENST00000522240 ANTXR1Q9H6X2 564 aa15.79■□□□□ 0.12
CPNE3-205ENST00000522240 CD209Q9NNX6 404 aa15.79■□□□□ 0.12
CPNE3-205ENST00000522240 ZNF646O15015 1829 aaPredicted RBP15.78■□□□□ 0.12
CPNE3-205ENST00000522240 PSME4Q14997 1843 aa15.78■□□□□ 0.12
CPNE3-205ENST00000522240 LTBP3Q9NS15 1303 aa15.78■□□□□ 0.12
CPNE3-205ENST00000522240 FRAT2O75474 233 aaPredicted RBP15.78■□□□□ 0.12
CPNE3-205ENST00000522240 KIAA2012Q0VF49 1180 aa15.78■□□□□ 0.12
CPNE3-205ENST00000522240 ZSCAN25Q6NSZ9 544 aa15.78■□□□□ 0.12
CPNE3-205ENST00000522240 TMED8Q6PL24 325 aaPredicted RBP15.78■□□□□ 0.12
CPNE3-205ENST00000522240 ZGPATQ8N5A5 531 aaKnown RBP15.78■□□□□ 0.12
CPNE3-205ENST00000522240 ESYT1Q9BSJ8 1104 aa15.78■□□□□ 0.12
CPNE3-205ENST00000522240 MYO5AQ9Y4I1 1855 aaKnown RBP15.78■□□□□ 0.12
CPNE3-205ENST00000522240 FAM205AQ6ZU69 1335 aa15.77■□□□□ 0.12
CPNE3-205ENST00000522240 WDR66Q8TBY9 1149 aa15.77■□□□□ 0.12
CPNE3-205ENST00000522240 PIH1D3Q9NQM4 214 aaKnown RBP15.77■□□□□ 0.12
CPNE3-205ENST00000522240 IQSEC3Q9UPP2 1182 aaPredicted RBP15.77■□□□□ 0.12
CPNE3-205ENST00000522240 SGSM2O43147 1006 aa15.76■□□□□ 0.11
CPNE3-205ENST00000522240 EPB41L2O43491 1005 aaKnown RBP15.76■□□□□ 0.11
CPNE3-205ENST00000522240 MAP3K12Q12852 859 aa15.76■□□□□ 0.11
CPNE3-205ENST00000522240 BCS1LQ9Y276 419 aa15.76■□□□□ 0.11
CPNE3-205ENST00000522240 CCDC88AQ3V6T2 1871 aa15.76■□□□□ 0.11
CPNE3-205ENST00000522240 RIMBP2O15034 1052 aa15.75■□□□□ 0.11
CPNE3-205ENST00000522240 RNF113AO15541 343 aaKnown RBP15.75■□□□□ 0.11
CPNE3-205ENST00000522240 REC8O95072 547 aa15.75■□□□□ 0.11
CPNE3-205ENST00000522240 ADD2P35612 726 aa15.75■□□□□ 0.11
CPNE3-205ENST00000522240 NMIQ13287 307 aaPredicted RBP15.75■□□□□ 0.11
CPNE3-205ENST00000522240 UBE3CQ15386 1083 aa15.75■□□□□ 0.11
CPNE3-205ENST00000522240 ZMYM1Q5SVZ6 1142 aa15.75■□□□□ 0.11
CPNE3-205ENST00000522240 PODNQ7Z5L7 613 aa15.75■□□□□ 0.11
CPNE3-205ENST00000522240 TBC1D22AQ8WUA7 517 aa15.75■□□□□ 0.11
CPNE3-205ENST00000522240 APPBP2Q92624 585 aa15.75■□□□□ 0.11
CPNE3-205ENST00000522240 UPF2Q9HAU5 1272 aaKnown RBP15.75■□□□□ 0.11
CPNE3-205ENST00000522240 HELLSQ9NRZ9 838 aa15.75■□□□□ 0.11
CPNE3-205ENST00000522240 A0A0D9SFI3 127 aa15.74■□□□□ 0.11
CPNE3-205ENST00000522240 PPIP5K2O43314 1243 aa15.74■□□□□ 0.11
CPNE3-205ENST00000522240 IDH1O75874 414 aaKnown RBP15.74■□□□□ 0.11
CPNE3-205ENST00000522240 CHAF1AQ13111 956 aaPredicted RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms