RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 AP1ARQ63HQ0 302 aa11.59□□□□□ -0.55
PDGFRB-207ENST00000520579 CCDC189A1A4V9 331 aa11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 ACTN2P35609 894 aa11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 PNOCQ13519 176 aa11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 LRRFIP1Q32MZ4 808 aaKnown RBP11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 FBXO18Q8NFZ0 1043 aa11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 EAF2Q96CJ1 260 aaPredicted RBP11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 FANCLQ9NW38 375 aa11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 MAP3K19Q56UN5 1328 aa11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 PPP2R2CQ9Y2T4 447 aa11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 REXO1L1PQ8IX06 675 aa11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 GSPT2Q8IYD1 628 aaKnown RBP11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 PUS7Q96PZ0 661 aaKnown RBP11.58□□□□□ -0.56
PDGFRB-207ENST00000520579 ADGRB2O60241 1585 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 ATP2B2Q01814 1243 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 ZNF569Q5MCW4 686 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 CAPZA3Q96KX2 299 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 ZNF396Q96N95 335 aaPredicted RBP11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 FAM107BQ9H098 131 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 CPLX1O14810 134 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 ZRANB2O95218 330 aaKnown RBP eCLIP11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 CNNM3Q8NE01 707 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 GOLGA5Q8TBA6 731 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 SSH3Q8TE77 659 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 ABCB6Q9NP58 842 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 MAP3K4Q9Y6R4 1608 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 COL3A1P02461 1466 aaPredicted RBP11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 PREX2Q70Z35 1606 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 MYL6BP14649 208 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 ANKRD1Q15327 319 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 LMOD2Q6P5Q4 547 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 ERC1Q8IUD2 1116 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 PARP3Q9Y6F1 533 aa11.57□□□□□ -0.56
PDGFRB-207ENST00000520579 GOLGA1Q92805 767 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 EVI5LQ96CN4 794 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 CLIC6Q96NY7 704 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 ELP1O95163 1332 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 L2HGDHQ9H9P8 463 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 SAMM50Q9Y512 469 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 SPHKAPQ2M3C7 1700 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 FRMD3A2A2Y4 597 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 CHMP4BP1P59074 171 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 FBXW10Q5XX13 1052 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 AIFM3Q96NN9 605 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 BAG1Q99933 345 aaPredicted RBP11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 EHD4Q9H223 541 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 KIAA1468Q9P260 1216 aa11.56□□□□□ -0.56
PDGFRB-207ENST00000520579 CDC25BP30305 580 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 CCDC85AQ96PX6 553 aaPredicted RBP11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 SNRKQ9NRH2 765 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 MAP3K2Q9Y2U5 619 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 KIAA0232Q92628 1395 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 EFCAB8A8MWE9 144 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 CTAGE5O15320 804 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 ZNF202O95125 648 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 OLFM4Q6UX06 510 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 ITFG2Q969R8 447 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 SUDS3Q9H7L9 328 aaPredicted RBP11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 FAM204AQ9H8W3 233 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 QRICH2Q9H0J4 1663 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 PRAMEF22A3QJZ6 481 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 FOXN1O15353 648 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 NAP1L1P55209 391 aaKnown RBP11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 CCDC158Q5M9N0 1113 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 GRAMD1CQ8IYS0 662 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 FUT8Q9BYC5 575 aa11.55□□□□□ -0.56
PDGFRB-207ENST00000520579 TTC41PQ6P2S7 1318 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 SSH2Q76I76 1423 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 SOWAHDA6NJG2 315 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 ZSCAN12O43309 604 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 ATP2C2O75185 946 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 SSBP05455 408 aaKnown RBP eCLIP11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 MATR3P43243 847 aaKnown RBP eCLIP11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 DNA2P51530 1060 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 SARM1Q6SZW1 724 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 JMYQ8N9B5 988 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 NGDNQ8NEJ9 315 aaKnown RBP11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 PPM1EQ8WY54 764 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 PNKPQ96T60 521 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 CDC5LQ99459 802 aaKnown RBP11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 CCDC196A0A1B0GTZ2 297 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 CCT5P48643 541 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 GBP6Q6ZN66 633 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 MAP4K1Q92918 833 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 C8orf76Q96K31 380 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 NBPF3Q9H094 633 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 A1BGP04217 495 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 KCTD19Q17RG1 926 aaPredicted RBP11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 TRIM65Q6PJ69 517 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 MPRIPQ6WCQ1 1025 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 EYA1Q99502 592 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 GOPCQ9HD26 462 aa11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 G3BP2Q9UN86 482 aaKnown RBP11.54□□□□□ -0.56
PDGFRB-207ENST00000520579 ZCCHC11Q5TAX3 1644 aaKnown RBP11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 PNPLA6Q8IY17 1366 aa11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 VWA3AA6NCI4 1184 aa11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 ENC1O14682 589 aa11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 SPTLC2O15270 562 aa11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 TPD52L2O43399 206 aaKnown RBP11.53□□□□□ -0.56
PDGFRB-207ENST00000520579 CYP21A2P08686 494 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms