RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CABP5Q9NP86 173 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 TRIM75PA6NK02 468 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 CCDC191Q8NCU4 936 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 PHF23Q9BUL5 403 aaPredicted RBP13.4□□□□□ -0.26
SYNPO-204ENST00000519664 WWC3Q9ULE0 1092 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 CDC42BPAQ5VT25 1732 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 A0A087WWV3 80 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 RFC4P35249 363 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 MATR3P43243 847 aaKnown RBP eCLIP13.4□□□□□ -0.26
SYNPO-204ENST00000519664 SPA17Q15506 151 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 HEATR3Q7Z4Q2 680 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 TTC6Q86TZ1 520 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 SETDB2Q96T68 719 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 CRNKL1Q9BZJ0 848 aaKnown RBP13.4□□□□□ -0.26
SYNPO-204ENST00000519664 MCM9Q9NXL9 1143 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 AOX1Q06278 1338 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 KIF5BP33176 963 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 FAM160A1Q05DH4 1040 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 HELLSQ9NRZ9 838 aa13.4□□□□□ -0.26
SYNPO-204ENST00000519664 PLXNC1O60486 1568 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 JAKMIP3Q5VZ66 844 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 SYT10Q6XYQ8 523 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 MAGEB6P1A0A0J9YX57 407 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 IRX3P78415 501 aaPredicted RBP13.39□□□□□ -0.27
SYNPO-204ENST00000519664 KARSQ15046 597 aaKnown RBP13.39□□□□□ -0.27
SYNPO-204ENST00000519664 SYCP1Q15431 976 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 CMTR1Q8N1G2 835 aaKnown RBP13.39□□□□□ -0.27
SYNPO-204ENST00000519664 TRIM47Q96LD4 638 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 CNNM2Q9H8M5 875 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 IGSF1Q8N6C5 1336 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 NR1I2O75469 434 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 SPTY2D1Q68D10 685 aaPredicted RBP13.39□□□□□ -0.27
SYNPO-204ENST00000519664 PUS3Q9BZE2 481 aaKnown RBP13.39□□□□□ -0.27
SYNPO-204ENST00000519664 DBNLQ9UJU6 430 aaKnown RBP13.39□□□□□ -0.27
SYNPO-204ENST00000519664 MAPK8IP1Q9UQF2 711 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 E7EWF7 191 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 ATP5JP18859 108 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 CTDSPL2Q05D32 466 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 FKBP15Q5T1M5 1219 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 ZNF397Q8NF99 534 aaPredicted RBP13.39□□□□□ -0.27
SYNPO-204ENST00000519664 APPBP2Q92624 585 aa13.39□□□□□ -0.27
SYNPO-204ENST00000519664 LSG1Q9H089 658 aaKnown RBP13.39□□□□□ -0.27
SYNPO-204ENST00000519664 MYOM2P54296 1465 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 TSPY3P0CV98 308 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 TSPY8P0CW00 308 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 MCM7P33993 719 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 ZNF589Q86UQ0 364 aaPredicted RBP13.38□□□□□ -0.27
SYNPO-204ENST00000519664 ZFP91Q96JP5 570 aaPredicted RBP13.38□□□□□ -0.27
SYNPO-204ENST00000519664 LUC7LQ9NQ29 371 aaKnown RBP13.38□□□□□ -0.27
SYNPO-204ENST00000519664 PAXBP1Q9Y5B6 917 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 PREX2Q70Z35 1606 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 PCDH11XQ9BZA7 1347 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 PCDH11YQ9BZA8 1340 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 EIF3JO75822 258 aaKnown RBP13.38□□□□□ -0.27
SYNPO-204ENST00000519664 YEATS4O95619 227 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 BAG3O95817 575 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 PICALMQ13492 652 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 CCDC178Q5BJE1 867 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 TMTC2Q8N394 836 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 CCDC150Q8NCX0 1101 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 STAMQ92783 540 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 LZTFL1Q9NQ48 299 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 PHKG2P15735 406 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 LRMPQ12912 555 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 ZNF174Q15697 407 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 TCERG1LQ5VWI1 586 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 DRC1Q96MC2 740 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 AATKQ6ZMQ8 1374 aa13.38□□□□□ -0.27
SYNPO-204ENST00000519664 LARGE1O95461 756 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 ADD1P35611 737 aaKnown RBP13.37□□□□□ -0.27
SYNPO-204ENST00000519664 CCDC148Q8NFR7 591 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 C8orf37Q96NL8 207 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 STAP2Q9UGK3 403 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 ANGEL1Q9UNK9 670 aaKnown RBP13.37□□□□□ -0.27
SYNPO-204ENST00000519664 FAM135BQ49AJ0 1406 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 USP28Q96RU2 1077 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 KCNJ14Q9UNX9 436 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 FSD2A1L4K1 749 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 TRIM21P19474 475 aaKnown RBP13.37□□□□□ -0.27
SYNPO-204ENST00000519664 GTF2F1P35269 517 aaKnown RBP eCLIP13.37□□□□□ -0.27
SYNPO-204ENST00000519664 ANO1Q5XXA6 986 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 CRACR2AQ9BSW2 395 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 OSBPL3Q9H4L5 887 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 ZSWIM6Q9HCJ5 1215 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 VWA3AA6NCI4 1184 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 TM6SF1Q9BZW5 370 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 KIF24Q5T7B8 1368 aa13.37□□□□□ -0.27
SYNPO-204ENST00000519664 MYO1BO43795 1136 aa13.36□□□□□ -0.27
SYNPO-204ENST00000519664 STAT6P42226 847 aa13.36□□□□□ -0.27
SYNPO-204ENST00000519664 TMEM132AQ24JP5 1023 aa13.36□□□□□ -0.27
SYNPO-204ENST00000519664 SLFNL1Q499Z3 407 aa13.36□□□□□ -0.27
SYNPO-204ENST00000519664 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.36□□□□□ -0.27
SYNPO-204ENST00000519664 CLSTN2Q9H4D0 955 aa13.36□□□□□ -0.27
SYNPO-204ENST00000519664 V9GY48 417 aaPredicted RBP13.36□□□□□ -0.27
SYNPO-204ENST00000519664 KANK3Q6NY19 840 aa13.36□□□□□ -0.27
SYNPO-204ENST00000519664 PLCD3Q8N3E9 789 aa13.36□□□□□ -0.27
SYNPO-204ENST00000519664 SH3TC1Q8TE82 1336 aa13.36□□□□□ -0.27
SYNPO-204ENST00000519664 DIS3L2Q8IYB7 885 aaKnown RBP13.36□□□□□ -0.27
SYNPO-204ENST00000519664 ZNF532Q9HCE3 1301 aa13.36□□□□□ -0.27
SYNPO-204ENST00000519664 LDHCP07864 332 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms