RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 LPIN2Q92539 896 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 CRBNQ96SW2 442 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 SIL1Q9H173 461 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 GNL3LQ9NVN8 582 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 ZNRF3Q9ULT6 936 aa9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 PA2G4Q9UQ80 394 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-222ENST00000515847 PNMA6EA0A0J9YXQ4 647 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 SURF6O75683 361 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 PDE8BO95263 885 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 PLCG2P16885 1265 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 CXCL9Q07325 125 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 ATG9AQ7Z3C6 839 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 TXNRD3Q86VQ6 643 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 VGLL2Q8N8G2 317 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 KIF1BPQ96EK5 621 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 COA1Q9GZY4 146 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 RWDD1Q9H446 243 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 GPR108Q9NPR9 543 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 GJA3Q9Y6H8 435 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 PSME4Q14997 1843 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 MYO3BQ8WXR4 1341 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 IRS2Q9Y4H2 1338 aa9.54□□□□□ -0.88
LIMCH1-222ENST00000515847 RAD17O75943 681 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 CHRM1P11229 460 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 MMP14P50281 582 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 IRX5P78411 483 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 TNIP1Q15025 636 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 ATP2B3Q16720 1220 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 ERICH6BQ5W0A0 696 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 POTEGQ6S5H5 508 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 C15orf52Q6ZUT6 534 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 PODNQ7Z5L7 613 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 ZNF467Q7Z7K2 595 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 GPC2Q8N158 579 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 CLASRPQ8N2M8 674 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 GCC1Q96CN9 775 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 GPATCH3Q96I76 525 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 L3MBTL3Q96JM7 780 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 RRAGCQ9HB90 399 aa9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 NOP58Q9Y2X3 529 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 ZNF646O15015 1829 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-222ENST00000515847 SCN4AP35499 1836 aa9.52□□□□□ -0.89
LIMCH1-222ENST00000515847 POTECB2RU33 542 aa9.52□□□□□ -0.89
LIMCH1-222ENST00000515847 KIF3CO14782 793 aa9.52□□□□□ -0.89
LIMCH1-222ENST00000515847 SEMA3EO15041 775 aa9.52□□□□□ -0.89
LIMCH1-222ENST00000515847 FRAT2O75474 233 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-222ENST00000515847 HDAC1Q13547 482 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-222ENST00000515847 GORABQ5T7V8 394 aa9.52□□□□□ -0.89
LIMCH1-222ENST00000515847 CIAPIN1Q6FI81 312 aa9.52□□□□□ -0.89
LIMCH1-222ENST00000515847 SPOCK2Q92563 424 aa9.52□□□□□ -0.89
LIMCH1-222ENST00000515847 KCNQ5Q9NR82 932 aa9.52□□□□□ -0.89
LIMCH1-222ENST00000515847 ARAP2Q8WZ64 1704 aa9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 ZNF609O15014 1411 aa9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 IQCA1LA6NCM1 817 aa9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 PSMD14O00487 310 aa9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 IGSF3O75054 1194 aa9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 RPS12P25398 132 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 LMOD1P29536 600 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 SCNN1DP51172 638 aa9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 ZGPATQ8N5A5 531 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 TBC1D22AQ8WUA7 517 aa9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 FAM163AQ96GL9 167 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 LRRCC1Q9C099 1032 aa9.51□□□□□ -0.89
LIMCH1-222ENST00000515847 IFIT2P09913 472 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-222ENST00000515847 UQCRFS1P1P0C7P4 283 aa9.5□□□□□ -0.89
LIMCH1-222ENST00000515847 VEGFAP15692 232 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-222ENST00000515847 FGFR2P21802 821 aa9.5□□□□□ -0.89
LIMCH1-222ENST00000515847 HIBADHP31937 336 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-222ENST00000515847 GMPSP49915 693 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-222ENST00000515847 CCDC158Q5M9N0 1113 aa9.5□□□□□ -0.89
LIMCH1-222ENST00000515847 OCEL1Q9H607 264 aa9.5□□□□□ -0.89
LIMCH1-222ENST00000515847 HACL1Q9UJ83 578 aa9.5□□□□□ -0.89
LIMCH1-222ENST00000515847 MAST3O60307 1309 aa9.5□□□□□ -0.89
LIMCH1-222ENST00000515847 A0A1B0GUL7 405 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 SHTN1A0MZ66 631 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 VIL1P09327 827 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 EPS15P42566 896 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 GYG1P46976 350 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 TFCP2Q12800 502 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 TNNI3KQ59H18 835 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 LCE2DQ5TA82 110 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 SIRT2Q8IXJ6 389 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 C16orf71Q8IYS4 520 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 EXOC6Q8TAG9 804 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 RHPN1Q8TCX5 695 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 FBXW7Q969H0 707 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 CD209Q9NNX6 404 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 GPRC5DQ9NZD1 345 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 HDAC9Q9UKV0 1011 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 EXOC6BQ9Y2D4 811 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 FPGT-TNNI3KV9GXZ4 949 aa9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 PDS5AQ29RF7 1337 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-222ENST00000515847 ADAMTSL1Q8N6G6 1762 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 USP17L3A6NCW0 530 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 USP17L4A6NCW7 530 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 IL1R1P14778 569 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 EPHX2P34913 555 aa9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 FKBP1AP62942 108 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-222ENST00000515847 TTC39AQ5SRH9 613 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms