RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 BICDL1Q6ZP65 573 aa9.11□□□□□ -0.95
NPHP3-211ENST00000515289 KRT26Q7Z3Y9 468 aa9.11□□□□□ -0.95
NPHP3-211ENST00000515289 FERMT3Q86UX7 667 aa9.11□□□□□ -0.95
NPHP3-211ENST00000515289 CCAR1Q8IX12 1150 aaKnown RBP9.11□□□□□ -0.95
NPHP3-211ENST00000515289 JMYQ8N9B5 988 aa9.11□□□□□ -0.95
NPHP3-211ENST00000515289 PRPF38AQ8NAV1 312 aaKnown RBP9.11□□□□□ -0.95
NPHP3-211ENST00000515289 THAP3Q8WTV1 239 aaPredicted RBP9.11□□□□□ -0.95
NPHP3-211ENST00000515289 CEP44Q9C0F1 390 aa9.11□□□□□ -0.95
NPHP3-211ENST00000515289 LATS2Q9NRM7 1088 aa9.11□□□□□ -0.95
NPHP3-211ENST00000515289 VPS8Q8N3P4 1428 aa9.11□□□□□ -0.95
NPHP3-211ENST00000515289 WDR62O43379 1518 aa9.1□□□□□ -0.95
NPHP3-211ENST00000515289 HCLS1P14317 486 aaPredicted RBP9.1□□□□□ -0.95
NPHP3-211ENST00000515289 TKFCQ3LXA3 575 aa9.1□□□□□ -0.95
NPHP3-211ENST00000515289 AGMOQ6ZNB7 445 aa9.1□□□□□ -0.95
NPHP3-211ENST00000515289 SYNPOQ8N3V7 929 aa9.1□□□□□ -0.95
NPHP3-211ENST00000515289 CCDC136Q96JN2 1154 aa9.1□□□□□ -0.95
NPHP3-211ENST00000515289 IER2Q9BTL4 223 aa9.1□□□□□ -0.95
NPHP3-211ENST00000515289 ST7Q9NRC1 585 aa9.1□□□□□ -0.95
NPHP3-211ENST00000515289 GEMIN8Q9NWZ8 242 aaKnown RBP9.1□□□□□ -0.95
NPHP3-211ENST00000515289 GABBR1Q9UBS5 961 aa9.1□□□□□ -0.95
NPHP3-211ENST00000515289 LEMD3Q9Y2U8 911 aa9.1□□□□□ -0.95
NPHP3-211ENST00000515289 CELA3AP09093 270 aa9.09□□□□□ -0.95
NPHP3-211ENST00000515289 ATP4AP20648 1035 aa9.09□□□□□ -0.95
NPHP3-211ENST00000515289 RNF144AP50876 292 aaPredicted RBP9.09□□□□□ -0.95
NPHP3-211ENST00000515289 TBX4P57082 545 aa9.09□□□□□ -0.95
NPHP3-211ENST00000515289 RPS26P62854 115 aaKnown RBP9.09□□□□□ -0.95
NPHP3-211ENST00000515289 TCEA2Q15560 299 aa9.09□□□□□ -0.95
NPHP3-211ENST00000515289 SEZ6Q53EL9 994 aa9.09□□□□□ -0.95
NPHP3-211ENST00000515289 TPTE2Q6XPS3 522 aa9.09□□□□□ -0.95
NPHP3-211ENST00000515289 ZNF526Q8TF50 670 aaPredicted RBP9.09□□□□□ -0.95
NPHP3-211ENST00000515289 MRGPRX2Q96LB1 330 aa9.09□□□□□ -0.95
NPHP3-211ENST00000515289 CEP89Q96ST8 783 aa9.09□□□□□ -0.95
NPHP3-211ENST00000515289 ZNF395Q9H8N7 513 aaPredicted RBP9.09□□□□□ -0.95
NPHP3-211ENST00000515289 HOMER2Q9NSB8 354 aa9.09□□□□□ -0.95
NPHP3-211ENST00000515289 CUL7Q14999 1698 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 SPATA31C2B4DYI2 1134 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 TRIM37O94972 964 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 TYRO3Q06418 890 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 FXNQ16595 210 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 CCDC146Q8IYE0 955 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 ITPKCQ96DU7 683 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 CRBNQ96SW2 442 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 LIN7BQ9HAP6 207 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 PLAAQ9Y263 795 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 GAPVD1Q14C86 1478 aa9.08□□□□□ -0.96
NPHP3-211ENST00000515289 TFE3P19532 575 aaPredicted RBP9.07□□□□□ -0.96
NPHP3-211ENST00000515289 MTERF2Q49AM1 385 aa9.07□□□□□ -0.96
NPHP3-211ENST00000515289 TTBK2Q6IQ55 1244 aa9.07□□□□□ -0.96
NPHP3-211ENST00000515289 LRRC69Q6ZNQ3 347 aa9.07□□□□□ -0.96
NPHP3-211ENST00000515289 CCDC84Q86UT8 332 aaPredicted RBP9.07□□□□□ -0.96
NPHP3-211ENST00000515289 TRIM42Q8IWZ5 723 aa9.07□□□□□ -0.96
NPHP3-211ENST00000515289 ZIC5Q96T25 663 aa9.07□□□□□ -0.96
NPHP3-211ENST00000515289 TCF12Q99081 682 aa9.07□□□□□ -0.96
NPHP3-211ENST00000515289 KLF16Q9BXK1 252 aaPredicted RBP9.07□□□□□ -0.96
NPHP3-211ENST00000515289 PRR12Q9ULL5 1215 aa9.07□□□□□ -0.96
NPHP3-211ENST00000515289 TDRD9Q8NDG6 1382 aaKnown RBP9.07□□□□□ -0.96
NPHP3-211ENST00000515289 ARHGAP35Q9NRY4 1499 aa9.07□□□□□ -0.96
NPHP3-211ENST00000515289 EIF3JO75822 258 aaKnown RBP9.06□□□□□ -0.96
NPHP3-211ENST00000515289 DALRD3Q5D0E6 543 aaKnown RBP9.06□□□□□ -0.96
NPHP3-211ENST00000515289 SMC5Q8IY18 1101 aa9.06□□□□□ -0.96
NPHP3-211ENST00000515289 PGBD3Q8N328 593 aa9.06□□□□□ -0.96
NPHP3-211ENST00000515289 C8orf48Q96LL4 319 aa9.06□□□□□ -0.96
NPHP3-211ENST00000515289 FERD3LQ96RJ6 166 aa9.06□□□□□ -0.96
NPHP3-211ENST00000515289 SALL4Q9UJQ4 1053 aa9.06□□□□□ -0.96
NPHP3-211ENST00000515289 THOC2Q8NI27 1593 aaKnown RBP9.06□□□□□ -0.96
NPHP3-211ENST00000515289 IFT140Q96RY7 1462 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 PRC1O43663 620 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 ZIC2O95409 532 aaPredicted RBP9.05□□□□□ -0.96
NPHP3-211ENST00000515289 CYP2E1P05181 493 aaPredicted RBP9.05□□□□□ -0.96
NPHP3-211ENST00000515289 ZNF165P49910 485 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 EXOSC10Q01780 885 aaKnown RBP9.05□□□□□ -0.96
NPHP3-211ENST00000515289 KCNC4Q03721 635 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 CCNJLQ8IV13 435 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 PMM1Q92871 262 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 RELTQ969Z4 430 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 SGSM3Q96HU1 749 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 KANSL3Q9P2N6 904 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 PTCH2Q9Y6C5 1203 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 WASF2Q9Y6W5 498 aa9.05□□□□□ -0.96
NPHP3-211ENST00000515289 ENC1O14682 589 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 ALDH1A1P00352 501 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 IMPDH2P12268 514 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 PHKA2P46019 1235 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 CASP7P55210 303 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 MPP2Q14168 576 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 CWF19L2Q2TBE0 894 aaKnown RBP9.04□□□□□ -0.96
NPHP3-211ENST00000515289 POTEGQ6S5H5 508 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 REXO1Q8N1G1 1221 aaKnown RBP9.04□□□□□ -0.96
NPHP3-211ENST00000515289 RBBP8NLQ8NC74 664 aaPredicted RBP9.04□□□□□ -0.96
NPHP3-211ENST00000515289 GATAD2BQ8WXI9 593 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 ZNF669Q96BR6 464 aaPredicted RBP9.04□□□□□ -0.96
NPHP3-211ENST00000515289 NECAB3Q96P71 396 aaPredicted RBP9.04□□□□□ -0.96
NPHP3-211ENST00000515289 DZANK1Q9NVP4 752 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 ZNRF3Q9ULT6 936 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 THRAP3Q9Y2W1 955 aaKnown RBP9.04□□□□□ -0.96
NPHP3-211ENST00000515289 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.04□□□□□ -0.96
NPHP3-211ENST00000515289 KDM2BQ8NHM5 1336 aa9.04□□□□□ -0.96
NPHP3-211ENST00000515289 PHF20L1A8MW92 1017 aa9.03□□□□□ -0.96
NPHP3-211ENST00000515289 F13A1P00488 732 aa9.03□□□□□ -0.96
NPHP3-211ENST00000515289 ITPKAP23677 461 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms