RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 PSMD14O00487 310 aa12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 GTF2IP78347 998 aa12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 HDAC1Q13547 482 aaPredicted RBP12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 HSP90AB4PQ58FF6 505 aa12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 CIAPIN1Q6FI81 312 aa12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 B4GALNT3Q6L9W6 998 aa12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 VPS37DQ86XT2 251 aa12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 IFNLR1Q8IU57 520 aaPredicted RBP12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 COA1Q9GZY4 146 aa12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 AKAP2Q9Y2D5 859 aa12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 ZC3H4Q9UPT8 1303 aaKnown RBP12.07□□□□□ -0.48
TOPBP1-209ENST00000513818 RAB11FIP3O75154 756 aa12.06□□□□□ -0.48
TOPBP1-209ENST00000513818 AAMPQ13685 434 aa12.06□□□□□ -0.48
TOPBP1-209ENST00000513818 CAVIN4Q5BKX8 364 aa12.06□□□□□ -0.48
TOPBP1-209ENST00000513818 CCDC102BQ68D86 513 aa12.06□□□□□ -0.48
TOPBP1-209ENST00000513818 PI16Q6UXB8 463 aa12.06□□□□□ -0.48
TOPBP1-209ENST00000513818 FBXO33Q7Z6M2 555 aa12.06□□□□□ -0.48
TOPBP1-209ENST00000513818 LRRCC1Q9C099 1032 aa12.06□□□□□ -0.48
TOPBP1-209ENST00000513818 WDR90Q96KV7 1748 aa12.06□□□□□ -0.48
TOPBP1-209ENST00000513818 GLTPD2A6NH11 291 aa12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 FRAT2O75474 233 aaPredicted RBP12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 IL1R1P14778 569 aa12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 GMPSP49915 693 aaPredicted RBP12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 SCARF1Q14162 830 aa12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 GORABQ5T7V8 394 aa12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 TSHZ3Q63HK5 1081 aa12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 PODNQ7Z5L7 613 aa12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 TDRD7Q8NHU6 1098 aaKnown RBP12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 OTUD7AQ8TE49 926 aaPredicted RBP12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 NMRK2Q9NPI5 230 aa12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 GPR108Q9NPR9 543 aa12.05□□□□□ -0.48
TOPBP1-209ENST00000513818 USP17L3A6NCW0 530 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 USP17L4A6NCW7 530 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 SCNN1DP51172 638 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 RASGRF1Q13972 1273 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 GRIK5Q16478 980 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 TTC39AQ5SRH9 613 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 DACT2Q5SW24 774 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 ANKRD45Q5TZF3 282 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 USP17L1Q7RTZ2 530 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 C16orf71Q8IYS4 520 aaPredicted RBP12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 GPC2Q8N158 579 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 CLASRPQ8N2M8 674 aaKnown RBP12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 CERS5Q8N5B7 392 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 RWDD1Q9H446 243 aaPredicted RBP12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 NDUFB9Q9Y6M9 179 aa12.04□□□□□ -0.48
TOPBP1-209ENST00000513818 F8W031 263 aaPredicted RBP12.03□□□□□ -0.48
TOPBP1-209ENST00000513818 IFIT2P09913 472 aaKnown RBP12.03□□□□□ -0.48
TOPBP1-209ENST00000513818 TTLL5Q6EMB2 1281 aa12.03□□□□□ -0.48
TOPBP1-209ENST00000513818 RSBN1LQ6PCB5 846 aaPredicted RBP12.03□□□□□ -0.48
TOPBP1-209ENST00000513818 LNPKQ9C0E8 428 aa12.03□□□□□ -0.48
TOPBP1-209ENST00000513818 SNRKQ9NRH2 765 aa12.03□□□□□ -0.48
TOPBP1-209ENST00000513818 AKAP11Q9UKA4 1901 aa12.03□□□□□ -0.48
TOPBP1-209ENST00000513818 MCAMP43121 646 aa12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 TNIP1Q15025 636 aa12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 STRIP1Q5VSL9 837 aa12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 DPY19L2Q6NUT2 758 aa12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 KIAA0825Q8IV33 1275 aa12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 SMC5Q8IY18 1101 aa12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 ZNF784Q8NCA9 323 aaPredicted RBP12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 GCC1Q96CN9 775 aa12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 RRAGCQ9HB90 399 aa12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 KDM2BQ8NHM5 1336 aa12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 MYO5AQ9Y4I1 1855 aaKnown RBP12.02□□□□□ -0.49
TOPBP1-209ENST00000513818 POTECB2RU33 542 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 EGFRP00533 1210 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 VIL1P09327 827 aaKnown RBP12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 ARID4AP29374 1257 aaPredicted RBP12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 EPS15P42566 896 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 CCDC158Q5M9N0 1113 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 MFSD14BQ5SR56 506 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 SKAP1Q86WV1 359 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 MICALL2Q8IY33 904 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 TRPM4Q8TD43 1214 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 GPBP1L1Q9HC44 474 aaPredicted RBP12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 GNL3LQ9NVN8 582 aaKnown RBP12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 HMG20BQ9P0W2 317 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 SCN4AP35499 1836 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 FAM205AQ6ZU69 1335 aa12.01□□□□□ -0.49
TOPBP1-209ENST00000513818 MAST2Q6P0Q8 1798 aa12□□□□□ -0.49
TOPBP1-209ENST00000513818 RBM26Q5T8P6 1007 aaKnown RBP12□□□□□ -0.49
TOPBP1-209ENST00000513818 TBC1D9Q6ZT07 1266 aa12□□□□□ -0.49
TOPBP1-209ENST00000513818 EDC3Q96F86 508 aaKnown RBP12□□□□□ -0.49
TOPBP1-209ENST00000513818 L3MBTL3Q96JM7 780 aaPredicted RBP12□□□□□ -0.49
TOPBP1-209ENST00000513818 GMLQ99445 158 aa12□□□□□ -0.49
TOPBP1-209ENST00000513818 GPRC5DQ9NZD1 345 aa12□□□□□ -0.49
TOPBP1-209ENST00000513818 PCDHAC2Q9Y5I4 1007 aa12□□□□□ -0.49
TOPBP1-209ENST00000513818 UQCRFS1P1P0C7P4 283 aa11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 POTEIP0CG38 1075 aa11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 POTEJP0CG39 1038 aa11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 LMOD1P29536 600 aaPredicted RBP11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 PRDX5P30044 214 aa11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 ZAP70P43403 619 aa11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 TBC1D10BQ4KMP7 808 aaPredicted RBP11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 SAMD7Q7Z3H4 446 aa11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 SPATA5Q8NB90 893 aa11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 SPRYD3Q8NCJ5 442 aa11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 CCDC136Q96JN2 1154 aa11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 DNAJC2Q99543 621 aaKnown RBP11.99□□□□□ -0.49
TOPBP1-209ENST00000513818 BOLA2Q9H3K6 86 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms