RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 RASAL3Q86YV0 1011 aa14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 OGFOD1Q8N543 542 aa14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 FAM84BQ96KN1 310 aaPredicted RBP14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 PRMT6Q96LA8 375 aaPredicted RBP14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 CNNM1Q9NRU3 951 aa14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 RNF186Q9NXI6 227 aa14.15□□□□□ -0.14
LIMCH1-214ENST00000512228 AKAP11Q9UKA4 1901 aa14.14□□□□□ -0.15
LIMCH1-214ENST00000512228 E9PSI1 815 aa14.14□□□□□ -0.15
LIMCH1-214ENST00000512228 PRKG1Q13976 671 aa14.14□□□□□ -0.15
LIMCH1-214ENST00000512228 RABL6Q3YEC7 729 aaPredicted RBP14.14□□□□□ -0.15
LIMCH1-214ENST00000512228 CCDC102AQ96A19 550 aa14.14□□□□□ -0.15
LIMCH1-214ENST00000512228 TRPA1O75762 1119 aa14.13□□□□□ -0.15
LIMCH1-214ENST00000512228 PTPN12Q05209 780 aaKnown RBP14.13□□□□□ -0.15
LIMCH1-214ENST00000512228 TDRD7Q8NHU6 1098 aaKnown RBP14.13□□□□□ -0.15
LIMCH1-214ENST00000512228 MYO3BQ8WXR4 1341 aa14.13□□□□□ -0.15
LIMCH1-214ENST00000512228 TAF7LQ5H9L4 462 aa14.12□□□□□ -0.15
LIMCH1-214ENST00000512228 MCOLN1Q9GZU1 580 aa14.12□□□□□ -0.15
LIMCH1-214ENST00000512228 PAPPA2Q9BXP8 1791 aa14.11□□□□□ -0.15
LIMCH1-214ENST00000512228 CLRN2A0PK11 232 aa14.11□□□□□ -0.15
LIMCH1-214ENST00000512228 RFX5P48382 616 aaPredicted RBP14.11□□□□□ -0.15
LIMCH1-214ENST00000512228 MKRN3Q13064 507 aaKnown RBP14.11□□□□□ -0.15
LIMCH1-214ENST00000512228 CFAP100Q494V2 611 aa14.11□□□□□ -0.15
LIMCH1-214ENST00000512228 VGLL2Q8N8G2 317 aa14.11□□□□□ -0.15
LIMCH1-214ENST00000512228 IQSEC3Q9UPP2 1182 aaPredicted RBP14.11□□□□□ -0.15
LIMCH1-214ENST00000512228 CA12O43570 354 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 HIBADHP31937 336 aaKnown RBP14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 FKBP1BP68106 108 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 UBE4AQ14139 1066 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 DLGAP5Q15398 846 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 ZNF804AQ7Z570 1209 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 FBXO33Q7Z6M2 555 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 CDAN1Q8IWY9 1227 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 MTMR14Q8NCE2 650 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 DEFB129Q9H1M3 183 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 R3HDMLQ9H3Y0 253 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 HDAC9Q9UKV0 1011 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 ECM29Q5VYK3 1845 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 FAM205AQ6ZU69 1335 aa14.1□□□□□ -0.15
LIMCH1-214ENST00000512228 SSC5DA1L4H1 1573 aa14.09□□□□□ -0.15
LIMCH1-214ENST00000512228 SPDYE2BA6NHP3 402 aa14.09□□□□□ -0.15
LIMCH1-214ENST00000512228 CCDC85CA6NKD9 419 aa14.09□□□□□ -0.15
LIMCH1-214ENST00000512228 SPDYE6P0CI01 402 aa14.09□□□□□ -0.15
LIMCH1-214ENST00000512228 TTLL12Q14166 644 aaPredicted RBP14.09□□□□□ -0.15
LIMCH1-214ENST00000512228 LDLRAD1Q5T700 205 aa14.09□□□□□ -0.15
LIMCH1-214ENST00000512228 NOB1Q9ULX3 412 aaKnown RBP14.09□□□□□ -0.15
LIMCH1-214ENST00000512228 PTPRCP08575 1304 aa14.09□□□□□ -0.15
LIMCH1-214ENST00000512228 TBC1D8O95759 1140 aa14.08□□□□□ -0.16
LIMCH1-214ENST00000512228 BCAMP50895 628 aa14.08□□□□□ -0.16
LIMCH1-214ENST00000512228 FKBP1AP62942 108 aaKnown RBP14.08□□□□□ -0.16
LIMCH1-214ENST00000512228 DGKZQ13574 1117 aa14.08□□□□□ -0.16
LIMCH1-214ENST00000512228 MFSD14BQ5SR56 506 aa14.08□□□□□ -0.16
LIMCH1-214ENST00000512228 NBPF12Q5TAG4 269 aaPredicted RBP14.08□□□□□ -0.16
LIMCH1-214ENST00000512228 CLMNQ96JQ2 1002 aa14.08□□□□□ -0.16
LIMCH1-214ENST00000512228 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.08□□□□□ -0.16
LIMCH1-214ENST00000512228 PDE8BO95263 885 aa14.07□□□□□ -0.16
LIMCH1-214ENST00000512228 MMP14P50281 582 aa14.07□□□□□ -0.16
LIMCH1-214ENST00000512228 ALDH1L2Q3SY69 923 aa14.07□□□□□ -0.16
LIMCH1-214ENST00000512228 APOBEC3FQ8IUX4 373 aaKnown RBP14.07□□□□□ -0.16
LIMCH1-214ENST00000512228 SMC4Q9NTJ3 1288 aa14.07□□□□□ -0.16
LIMCH1-214ENST00000512228 ANGEL1Q9UNK9 670 aaKnown RBP14.07□□□□□ -0.16
LIMCH1-214ENST00000512228 USP2O75604 605 aaPredicted RBP14.06□□□□□ -0.16
LIMCH1-214ENST00000512228 FGFR2P21802 821 aa14.06□□□□□ -0.16
LIMCH1-214ENST00000512228 TM4SF4P48230 202 aa14.06□□□□□ -0.16
LIMCH1-214ENST00000512228 METTL24Q5JXM2 366 aa14.06□□□□□ -0.16
LIMCH1-214ENST00000512228 ATG9AQ7Z3C6 839 aa14.06□□□□□ -0.16
LIMCH1-214ENST00000512228 TDRD3Q9H7E2 651 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-214ENST00000512228 SAGE1Q9NXZ1 904 aa14.06□□□□□ -0.16
LIMCH1-214ENST00000512228 TTF2Q9UNY4 1162 aaKnown RBP14.06□□□□□ -0.16
LIMCH1-214ENST00000512228 TNNQ9UQP3 1299 aa14.06□□□□□ -0.16
LIMCH1-214ENST00000512228 MROH5Q6ZUA9 1318 aa14.06□□□□□ -0.16
LIMCH1-214ENST00000512228 RBM5P52756 815 aaKnown RBP eCLIP14.05□□□□□ -0.16
LIMCH1-214ENST00000512228 RASA3Q14644 834 aa14.05□□□□□ -0.16
LIMCH1-214ENST00000512228 TEPSINQ96N21 525 aa14.05□□□□□ -0.16
LIMCH1-214ENST00000512228 VEZTQ9HBM0 779 aa14.05□□□□□ -0.16
LIMCH1-214ENST00000512228 ZNF70Q9UC06 446 aaPredicted RBP14.05□□□□□ -0.16
LIMCH1-214ENST00000512228 CCER2I3L3R5 266 aa14.04□□□□□ -0.16
LIMCH1-214ENST00000512228 GJA5P36382 358 aa14.04□□□□□ -0.16
LIMCH1-214ENST00000512228 CHAF1AQ13111 956 aaPredicted RBP14.04□□□□□ -0.16
LIMCH1-214ENST00000512228 MAP3K11Q16584 847 aa14.04□□□□□ -0.16
LIMCH1-214ENST00000512228 SPDYE2Q495Y8 402 aa14.04□□□□□ -0.16
LIMCH1-214ENST00000512228 SPRYD7Q5W111 196 aa14.04□□□□□ -0.16
LIMCH1-214ENST00000512228 DZIP1LQ8IYY4 767 aaKnown RBP14.04□□□□□ -0.16
LIMCH1-214ENST00000512228 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.04□□□□□ -0.16
LIMCH1-214ENST00000512228 EYA2O00167 538 aa14.03□□□□□ -0.16
LIMCH1-214ENST00000512228 NF2P35240 595 aa14.03□□□□□ -0.16
LIMCH1-214ENST00000512228 CRKP46108 304 aa14.03□□□□□ -0.16
LIMCH1-214ENST00000512228 RARSP54136 660 aaKnown RBP14.03□□□□□ -0.16
LIMCH1-214ENST00000512228 CACNB3P54284 484 aa14.03□□□□□ -0.16
LIMCH1-214ENST00000512228 ARMC9Q7Z3E5 817 aa14.03□□□□□ -0.16
LIMCH1-214ENST00000512228 PA2G4Q9UQ80 394 aaKnown RBP14.03□□□□□ -0.16
LIMCH1-214ENST00000512228 TCP10L2B9ZVM9 353 aa14.02□□□□□ -0.17
LIMCH1-214ENST00000512228 ZNF296Q8WUU4 475 aaPredicted RBP14.02□□□□□ -0.17
LIMCH1-214ENST00000512228 SLC10A4Q96EP9 437 aa14.02□□□□□ -0.17
LIMCH1-214ENST00000512228 MEIS3Q99687 375 aa14.02□□□□□ -0.17
LIMCH1-214ENST00000512228 SIL1Q9H173 461 aa14.02□□□□□ -0.17
LIMCH1-214ENST00000512228 SERPINA10Q9UK55 444 aa14.02□□□□□ -0.17
LIMCH1-214ENST00000512228 LRRFIP2Q9Y608 721 aaKnown RBP14.02□□□□□ -0.17
LIMCH1-214ENST00000512228 ARAP2Q8WZ64 1704 aa14.01□□□□□ -0.17
LIMCH1-214ENST00000512228 BCAR3O75815 825 aa14.01□□□□□ -0.17
LIMCH1-214ENST00000512228 RGS19P49795 217 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms