RNA–Protein interactions for RNA: ENST00000511604.5

CPNE4-208, Transcript of copine 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE4, Length 2,503 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-208ENST00000511604 SALL3Q9BXA9 1300 aa8.39□□□□□ -1.07
CPNE4-208ENST00000511604 TRAPPC8Q9Y2L5 1435 aa8.39□□□□□ -1.07
CPNE4-208ENST00000511604 ADAMTSL3P82987 1691 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 HSPA4P34932 840 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 KRT85P78386 507 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 ACTN3Q08043 901 aaPredicted RBP8.38□□□□□ -1.07
CPNE4-208ENST00000511604 KIAA1328Q86T90 577 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 CEP57Q86XR8 500 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 TCEANC2Q96MN5 208 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 ANKZF1Q9H8Y5 726 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 ABCB6Q9NP58 842 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 LMCD1Q9NZU5 365 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 STAG3Q9UJ98 1225 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 SPG7Q9UQ90 795 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 PCDHGA4Q9Y5G9 962 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 ATXN2Q99700 1313 aaKnown RBP8.38□□□□□ -1.07
CPNE4-208ENST00000511604 COL3A1P02461 1466 aaPredicted RBP8.38□□□□□ -1.07
CPNE4-208ENST00000511604 UNC13BO14795 1591 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 GOLGA6L4A6NEF3 574 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 ENO4A6NNW6 628 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 KCNB1Q14721 858 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 ME3Q16798 604 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 NCAPG2Q86XI2 1143 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 MAB21L3Q8N8X9 362 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 CCDC97Q96F63 343 aaPredicted RBP8.38□□□□□ -1.07
CPNE4-208ENST00000511604 OSBPL3Q9H4L5 887 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 HOMER3Q9NSC5 361 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 SYCP2Q9BX26 1530 aa8.38□□□□□ -1.07
CPNE4-208ENST00000511604 PNMA6EA0A0J9YXQ4 647 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 POTEB2H3BUK9 544 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 DIAPH1O60610 1272 aaKnown RBP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 PRPF6O94906 941 aaKnown RBP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 EZRP15311 586 aaKnown RBP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 MYSM1Q5VVJ2 828 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 FAM177A1Q8N128 213 aaPredicted RBP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 CERKQ8TCT0 537 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 FTOQ9C0B1 505 aaKnown RBP eCLIP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 ATP6V0A4Q9HBG4 840 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 IL1RAPL2Q9NP60 686 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 NPHP3Q7Z494 1330 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 CARMIL2Q6F5E8 1435 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 IQGAP3Q86VI3 1631 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 SHTN1A0MZ66 631 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 FYB1O15117 783 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 IRAK1P51617 712 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 SMTNP53814 917 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 CEBPZQ03701 1054 aaKnown RBP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 PDIA5Q14554 519 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 SETDB1Q15047 1291 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 TSHZ1Q6ZSZ6 1077 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 G2E3Q7L622 706 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 DHX40Q8IX18 779 aaKnown RBP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 RPAP2Q8IXW5 612 aaPredicted RBP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 MSANTD4Q8NCY6 345 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 OR8K1Q8NGG5 319 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 BCAS4Q8TDM0 211 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 LMBR1Q8WVP7 490 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 SMARCC1Q92922 1105 aaPredicted RBP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 PNKPQ96T60 521 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 NAT10Q9H0A0 1025 aaKnown RBP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 HYPKQ9NX55 129 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 MYO6Q9UM54 1294 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 LIMCH1Q9UPQ0 1083 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 TBC1D2BQ9UPU7 963 aa8.37□□□□□ -1.07
CPNE4-208ENST00000511604 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.37□□□□□ -1.07
CPNE4-208ENST00000511604 CDHR2Q9BYE9 1310 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 RASSF9O75901 435 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 CDKL5O76039 1030 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 KIAA0754O94854 1291 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 RTN3O95197 1032 aaPredicted RBP8.36□□□□□ -1.07
CPNE4-208ENST00000511604 IMPDH2P12268 514 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 PDE6BP35913 854 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 CHMP4BP1P59074 171 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 STX1AQ16623 288 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 HHATQ5VTY9 493 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 NUTM2GQ5VZR2 741 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 TMC6Q7Z403 805 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 TCP11Q8WWU5 503 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 WDR24Q96S15 920 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 API5Q9BZZ5 524 aaKnown RBP8.36□□□□□ -1.07
CPNE4-208ENST00000511604 KAT14Q9H8E8 782 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 GOPCQ9HD26 462 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 ARHGEF5Q12774 1597 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 FAM135BQ49AJ0 1406 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 TTC21AQ8NDW8 1320 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 VWA3AA6NCI4 1184 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 LRRIQ3A6PVS8 624 aaPredicted RBP8.36□□□□□ -1.07
CPNE4-208ENST00000511604 EPB41L2O43491 1005 aaKnown RBP8.36□□□□□ -1.07
CPNE4-208ENST00000511604 SYF2O95926 243 aaKnown RBP8.36□□□□□ -1.07
CPNE4-208ENST00000511604 GBP2P32456 591 aaPredicted RBP8.36□□□□□ -1.07
CPNE4-208ENST00000511604 AARSP49588 968 aaKnown RBP eCLIP8.36□□□□□ -1.07
CPNE4-208ENST00000511604 SLC4A10Q6U841 1118 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 IGSF22Q8N9C0 903 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 DHX58Q96C10 678 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 STK31Q9BXU1 1019 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 ZSWIM4Q9H7M6 989 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 BATF3Q9NR55 127 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 BLOC1S6Q9UL45 172 aa8.36□□□□□ -1.07
CPNE4-208ENST00000511604 DUOX2Q9NRD8 1548 aa8.35□□□□□ -1.07
CPNE4-208ENST00000511604 TFRCP02786 760 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms