RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 PCDHB15Q9Y5E8 787 aa14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 FPGT-TNNI3KV9GXZ4 949 aa14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 ZNF609O15014 1411 aa14.06□□□□□ -0.16
LIMCH1-210ENST00000509454 POTECB2RU33 542 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 PHKA1P46020 1223 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 DACT2Q5SW24 774 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 RBM26Q5T8P6 1007 aaKnown RBP14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 TDRD7Q8NHU6 1098 aaKnown RBP14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 IL1RAPL2Q9NP60 686 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 SCN4AP35499 1836 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 MYO3BQ8WXR4 1341 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 SHTN1A0MZ66 631 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 F8W031 263 aaPredicted RBP14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 RAB11FIP3O75154 756 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 AACSQ86V21 672 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 KIAA0825Q8IV33 1275 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 AGBL3Q8NEM8 1001 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 RHPN1Q8TCX5 695 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 DPF2Q92785 391 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 KIF1BPQ96EK5 621 aa14.05□□□□□ -0.16
LIMCH1-210ENST00000509454 USP17L8P0C7I0 530 aa14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 AAMPQ13685 434 aa14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 MFSD14BQ5SR56 506 aa14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 TTC39AQ5SRH9 613 aa14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 CCDC102BQ68D86 513 aa14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 PNMA8AQ86V59 439 aaPredicted RBP14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 CLASRPQ8N2M8 674 aaKnown RBP14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 OGFOD1Q8N543 542 aa14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 CCDC8Q9H0W5 538 aaPredicted RBP14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 GPR108Q9NPR9 543 aa14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 ADARB2Q9NS39 739 aaKnown RBP14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 HDAC9Q9UKV0 1011 aa14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 PSME4Q14997 1843 aa14.04□□□□□ -0.16
LIMCH1-210ENST00000509454 IFIT2P09913 472 aaKnown RBP14.03□□□□□ -0.16
LIMCH1-210ENST00000509454 TBC1D10BQ4KMP7 808 aaPredicted RBP14.03□□□□□ -0.16
LIMCH1-210ENST00000509454 CCDC158Q5M9N0 1113 aa14.03□□□□□ -0.16
LIMCH1-210ENST00000509454 SAMD7Q7Z3H4 446 aa14.03□□□□□ -0.16
LIMCH1-210ENST00000509454 DBNDD2Q9BQY9 259 aa14.03□□□□□ -0.16
LIMCH1-210ENST00000509454 ZBTB47Q9UFB7 747 aaPredicted RBP14.03□□□□□ -0.16
LIMCH1-210ENST00000509454 ARAP2Q8WZ64 1704 aa14.03□□□□□ -0.16
LIMCH1-210ENST00000509454 MYH13Q9UKX3 1938 aa14.02□□□□□ -0.16
LIMCH1-210ENST00000509454 TOMM70O94826 608 aa14.02□□□□□ -0.16
LIMCH1-210ENST00000509454 LRRCC1Q9C099 1032 aa14.02□□□□□ -0.16
LIMCH1-210ENST00000509454 DENND2AQ9ULE3 1009 aa14.02□□□□□ -0.16
LIMCH1-210ENST00000509454 FAM205AQ6ZU69 1335 aa14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 SMARCA5O60264 1052 aaPredicted RBP14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 UQCRFS1P1P0C7P4 283 aa14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 POTEIP0CG38 1075 aa14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 POTEJP0CG39 1038 aa14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 RBM5P52756 815 aaKnown RBP eCLIP14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 KIF4BQ2VIQ3 1234 aa14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 USP50Q70EL3 339 aaPredicted RBP14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 CERS5Q8N5B7 392 aa14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 TRPM4Q8TD43 1214 aa14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 TBC1D22AQ8WUA7 517 aa14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 EAF2Q96CJ1 260 aaPredicted RBP14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 RWDD1Q9H446 243 aaPredicted RBP14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 DCTPP1Q9H773 170 aa14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 TLR7Q9NYK1 1049 aaKnown RBP14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 U3KPZ7 1027 aaPredicted RBP14.01□□□□□ -0.17
LIMCH1-210ENST00000509454 SEMA3EO15041 775 aa14□□□□□ -0.17
LIMCH1-210ENST00000509454 NEFLP07196 543 aa14□□□□□ -0.17
LIMCH1-210ENST00000509454 LDHDQ86WU2 507 aa14□□□□□ -0.17
LIMCH1-210ENST00000509454 SMC1BQ8NDV3 1235 aa14□□□□□ -0.17
LIMCH1-210ENST00000509454 RBM46Q8TBY0 533 aaKnown RBP14□□□□□ -0.17
LIMCH1-210ENST00000509454 WDR66Q8TBY9 1149 aa14□□□□□ -0.17
LIMCH1-210ENST00000509454 GMLQ99445 158 aa14□□□□□ -0.17
LIMCH1-210ENST00000509454 MYOZ2Q9NPC6 264 aa14□□□□□ -0.17
LIMCH1-210ENST00000509454 FKBP1AP62942 108 aaKnown RBP14□□□□□ -0.17
LIMCH1-210ENST00000509454 RASGRF1Q13972 1273 aa14□□□□□ -0.17
LIMCH1-210ENST00000509454 CHADLQ6NUI6 762 aa14□□□□□ -0.17
LIMCH1-210ENST00000509454 DBNLQ9UJU6 430 aaKnown RBP14□□□□□ -0.17
LIMCH1-210ENST00000509454 TTF2Q9UNY4 1162 aaKnown RBP14□□□□□ -0.17
LIMCH1-210ENST00000509454 SNRKQ9NRH2 765 aa13.99□□□□□ -0.17
LIMCH1-210ENST00000509454 ABCF2Q9UG63 623 aa13.99□□□□□ -0.17
LIMCH1-210ENST00000509454 COL1A1P02452 1464 aaPredicted RBP13.98□□□□□ -0.17
LIMCH1-210ENST00000509454 EGFRP00533 1210 aa13.98□□□□□ -0.17
LIMCH1-210ENST00000509454 ZNF280AP59817 542 aaPredicted RBP13.98□□□□□ -0.17
LIMCH1-210ENST00000509454 HDAC1Q13547 482 aaPredicted RBP13.98□□□□□ -0.17
LIMCH1-210ENST00000509454 DLGAP5Q15398 846 aa13.98□□□□□ -0.17
LIMCH1-210ENST00000509454 MAP1SQ66K74 1059 aaPredicted RBP13.98□□□□□ -0.17
LIMCH1-210ENST00000509454 SPATA5Q8NB90 893 aa13.98□□□□□ -0.17
LIMCH1-210ENST00000509454 ZNF646O15015 1829 aaPredicted RBP13.98□□□□□ -0.17
LIMCH1-210ENST00000509454 LDHBP07195 334 aaKnown RBP13.97□□□□□ -0.17
LIMCH1-210ENST00000509454 ARID4AP29374 1257 aaPredicted RBP13.97□□□□□ -0.17
LIMCH1-210ENST00000509454 HIRAP54198 1017 aaPredicted RBP13.97□□□□□ -0.17
LIMCH1-210ENST00000509454 SCARF1Q14162 830 aa13.97□□□□□ -0.17
LIMCH1-210ENST00000509454 ANKRD45Q5TZF3 282 aa13.97□□□□□ -0.17
LIMCH1-210ENST00000509454 PI16Q6UXB8 463 aa13.97□□□□□ -0.17
LIMCH1-210ENST00000509454 ZGPATQ8N5A5 531 aaKnown RBP13.97□□□□□ -0.17
LIMCH1-210ENST00000509454 GCC1Q96CN9 775 aa13.97□□□□□ -0.17
LIMCH1-210ENST00000509454 HMG20BQ9P0W2 317 aa13.97□□□□□ -0.17
LIMCH1-210ENST00000509454 MAST3O60307 1309 aa13.97□□□□□ -0.17
LIMCH1-210ENST00000509454 MCAMP43121 646 aa13.96□□□□□ -0.17
LIMCH1-210ENST00000509454 C1QTNF8P60827 252 aa13.96□□□□□ -0.17
LIMCH1-210ENST00000509454 FSTL1Q12841 308 aa13.96□□□□□ -0.17
LIMCH1-210ENST00000509454 GRIK5Q16478 980 aa13.96□□□□□ -0.17
LIMCH1-210ENST00000509454 CFAP100Q494V2 611 aa13.96□□□□□ -0.17
LIMCH1-210ENST00000509454 DZIP1Q86YF9 867 aaKnown RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms