RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 PDE2AO00408 941 aaPredicted RBP6.12□□□□□ -1.43
USP53-204ENST00000507906 FGFR3P22607 806 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 ETFBP38117 255 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 NASPP49321 788 aaPredicted RBP6.12□□□□□ -1.43
USP53-204ENST00000507906 NRLP54845 237 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 CAMK2GQ13555 558 aaPredicted RBP6.12□□□□□ -1.43
USP53-204ENST00000507906 ZNF662Q6ZS27 426 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 FBXO27Q8NI29 283 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 STK35Q8TDR2 534 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 PBX4Q9BYU1 374 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 ZNF576Q9H609 170 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 ATXN7L1Q9ULK2 861 aaPredicted RBP6.12□□□□□ -1.43
USP53-204ENST00000507906 PCDHB5Q9Y5E4 795 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 MRVI1Q9Y6F6 885 aa6.12□□□□□ -1.43
USP53-204ENST00000507906 PPFIA3O75145 1194 aa6.11□□□□□ -1.43
USP53-204ENST00000507906 GPLD1P80108 840 aa6.11□□□□□ -1.43
USP53-204ENST00000507906 ZNF423Q2M1K9 1284 aa6.11□□□□□ -1.43
USP53-204ENST00000507906 AGMOQ6ZNB7 445 aa6.11□□□□□ -1.43
USP53-204ENST00000507906 NPAS3Q8IXF0 933 aa6.11□□□□□ -1.43
USP53-204ENST00000507906 ASAP3Q8TDY4 903 aa6.11□□□□□ -1.43
USP53-204ENST00000507906 PLD4Q96BZ4 506 aa6.11□□□□□ -1.43
USP53-204ENST00000507906 SEC16BQ96JE7 1060 aa6.11□□□□□ -1.43
USP53-204ENST00000507906 ZSWIM4Q9H7M6 989 aa6.11□□□□□ -1.43
USP53-204ENST00000507906 ZNF408Q9H9D4 720 aa6.11□□□□□ -1.43
USP53-204ENST00000507906 DNAJB12Q9NXW2 375 aaKnown RBP6.11□□□□□ -1.43
USP53-204ENST00000507906 STK10O94804 968 aaKnown RBP6.1□□□□□ -1.43
USP53-204ENST00000507906 SOX9P48436 509 aa6.1□□□□□ -1.43
USP53-204ENST00000507906 FAM182BQ5T319 152 aa6.1□□□□□ -1.43
USP53-204ENST00000507906 TTBK2Q6IQ55 1244 aa6.1□□□□□ -1.43
USP53-204ENST00000507906 BNC2Q6ZN30 1099 aaPredicted RBP6.1□□□□□ -1.43
USP53-204ENST00000507906 SYT9Q86SS6 491 aa6.1□□□□□ -1.43
USP53-204ENST00000507906 NOP9Q86U38 636 aaKnown RBP6.1□□□□□ -1.43
USP53-204ENST00000507906 VWA5B2Q8N398 1253 aa6.1□□□□□ -1.43
USP53-204ENST00000507906 GOLM1Q8NBJ4 401 aa6.1□□□□□ -1.43
USP53-204ENST00000507906 NT5C1AQ9BXI3 368 aa6.1□□□□□ -1.43
USP53-204ENST00000507906 NAGPAQ9UK23 515 aa6.1□□□□□ -1.43
USP53-204ENST00000507906 BMP6P22004 513 aa6.09□□□□□ -1.43
USP53-204ENST00000507906 PCBP4P57723 403 aaKnown RBP6.09□□□□□ -1.43
USP53-204ENST00000507906 LMNB2Q03252 620 aa6.09□□□□□ -1.43
USP53-204ENST00000507906 SERINC3Q13530 473 aa6.09□□□□□ -1.43
USP53-204ENST00000507906 PWP1Q13610 501 aa6.09□□□□□ -1.43
USP53-204ENST00000507906 BMS1Q14692 1282 aaKnown RBP6.09□□□□□ -1.43
USP53-204ENST00000507906 MPRIPQ6WCQ1 1025 aa6.09□□□□□ -1.43
USP53-204ENST00000507906 VN1R5Q7Z5H4 357 aa6.09□□□□□ -1.43
USP53-204ENST00000507906 NLGN1Q8N2Q7 840 aa6.09□□□□□ -1.43
USP53-204ENST00000507906 GRIN3AQ8TCU5 1115 aa6.09□□□□□ -1.43
USP53-204ENST00000507906 EFCC1Q9HA90 598 aa6.09□□□□□ -1.43
USP53-204ENST00000507906 TBX22Q9Y458 520 aa6.09□□□□□ -1.43
USP53-204ENST00000507906 TLDC2A0PJX2 215 aa6.08□□□□□ -1.44
USP53-204ENST00000507906 TLR3O15455 904 aaKnown RBP6.08□□□□□ -1.44
USP53-204ENST00000507906 F13A1P00488 732 aa6.08□□□□□ -1.44
USP53-204ENST00000507906 PTPN11Q06124 597 aaPredicted RBP6.08□□□□□ -1.44
USP53-204ENST00000507906 TBC1D8BQ0IIM8 1120 aa6.08□□□□□ -1.44
USP53-204ENST00000507906 PERM1Q5SV97 790 aa6.08□□□□□ -1.44
USP53-204ENST00000507906 PCNX4Q63HM2 1172 aa6.08□□□□□ -1.44
USP53-204ENST00000507906 HIRIP3Q9BW71 556 aaPredicted RBP6.08□□□□□ -1.44
USP53-204ENST00000507906 CEP44Q9C0F1 390 aa6.08□□□□□ -1.44
USP53-204ENST00000507906 OSBPL2Q9H1P3 480 aa6.08□□□□□ -1.44
USP53-204ENST00000507906 SH2B1Q9NRF2 756 aaPredicted RBP6.08□□□□□ -1.44
USP53-204ENST00000507906 PPT2Q9UMR5 302 aa6.08□□□□□ -1.44
USP53-204ENST00000507906 FAM221AA4D161 298 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 KLF4O43474 513 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 CPB1P15086 417 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 RPS26P11Q5JNZ5 115 aaPredicted RBP6.07□□□□□ -1.44
USP53-204ENST00000507906 SNAP47Q5SQN1 464 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 ZNF468Q5VIY5 522 aaPredicted RBP6.07□□□□□ -1.44
USP53-204ENST00000507906 CEP135Q66GS9 1140 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 HGSNATQ68CP4 663 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 ZNF746Q6NUN9 644 aaPredicted RBP6.07□□□□□ -1.44
USP53-204ENST00000507906 CCDC81Q6ZN84 652 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 FAM196AQ6ZSG2 479 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 JAZF1Q86VZ6 243 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 SLITRK4Q8IW52 837 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 GPR161Q8N6U8 529 aaKnown RBP6.07□□□□□ -1.44
USP53-204ENST00000507906 FAM169BQ8N8A8 192 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 GMCL1Q96IK5 515 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 SPACA7Q96KW9 195 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 MDFIQ99750 246 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 SOX13Q9UN79 622 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 TRIM33Q9UPN9 1127 aa6.07□□□□□ -1.44
USP53-204ENST00000507906 SUPT16HQ9Y5B9 1047 aaKnown RBP6.07□□□□□ -1.44
USP53-204ENST00000507906 CDC14CA4D256 554 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 SSBP05455 408 aaKnown RBP eCLIP6.06□□□□□ -1.44
USP53-204ENST00000507906 VSIG8P0DPA2 414 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 RLBP1P12271 317 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 EIF2AK2P19525 551 aaKnown RBP6.06□□□□□ -1.44
USP53-204ENST00000507906 KRT76Q01546 638 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 APOBRQ0VD83 1088 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 SEPT6Q14141 434 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 GAS6Q14393 721 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 SEZ6Q53EL9 994 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 ANKS3Q6ZW76 656 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 FAM35AQ86V20 835 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 BSNDQ8WZ55 320 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 JARID2Q92833 1246 aaPredicted RBP6.06□□□□□ -1.44
USP53-204ENST00000507906 SHDQ96IW2 340 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 UBE2OQ9C0C9 1292 aaKnown RBP6.06□□□□□ -1.44
USP53-204ENST00000507906 TMEM39AQ9NV64 488 aa6.06□□□□□ -1.44
USP53-204ENST00000507906 GPN3Q9UHW5 284 aaPredicted RBP6.06□□□□□ -1.44
USP53-204ENST00000507906 PRR12Q9ULL5 1215 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms