RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 Q6ZUG5 572 aa25.36■■□□□ 1.65
UBE2D3-216ENST00000503742 FGAP02671 866 aa25.36■■□□□ 1.65
UBE2D3-216ENST00000503742 RFC4P35249 363 aa25.36■■□□□ 1.65
UBE2D3-216ENST00000503742 KLHL40Q2TBA0 621 aa25.36■■□□□ 1.65
UBE2D3-216ENST00000503742 CELF1Q92879 486 aaKnown RBP25.36■■□□□ 1.65
UBE2D3-216ENST00000503742 WWC3Q9ULE0 1092 aa25.36■■□□□ 1.65
UBE2D3-216ENST00000503742 ZNF532Q9HCE3 1301 aa25.36■■□□□ 1.65
UBE2D3-216ENST00000503742 STX6O43752 255 aa25.35■■□□□ 1.65
UBE2D3-216ENST00000503742 UBE4AQ14139 1066 aa25.35■■□□□ 1.65
UBE2D3-216ENST00000503742 CHAMP1Q96JM3 812 aa25.35■■□□□ 1.65
UBE2D3-216ENST00000503742 MINPP1Q9UNW1 487 aa25.35■■□□□ 1.65
UBE2D3-216ENST00000503742 UBR3Q6ZT12 1888 aa25.35■■□□□ 1.65
UBE2D3-216ENST00000503742 ZNF804BA4D1E1 1349 aa25.35■■□□□ 1.65
UBE2D3-216ENST00000503742 ADRA2BP18089 450 aa25.35■■□□□ 1.65
UBE2D3-216ENST00000503742 AGXT2Q9BYV1 514 aa25.35■■□□□ 1.65
UBE2D3-216ENST00000503742 PHF14O94880 888 aa25.33■■□□□ 1.65
UBE2D3-216ENST00000503742 ZSCAN22P10073 491 aaPredicted RBP25.33■■□□□ 1.65
UBE2D3-216ENST00000503742 KRT27Q7Z3Y8 459 aa25.33■■□□□ 1.65
UBE2D3-216ENST00000503742 IMMTQ16891 758 aaKnown RBP25.33■■□□□ 1.64
UBE2D3-216ENST00000503742 DDX49Q9Y6V7 483 aaKnown RBP25.33■■□□□ 1.64
UBE2D3-216ENST00000503742 RPS8P62241 208 aaKnown RBP25.32■■□□□ 1.64
UBE2D3-216ENST00000503742 MAP3K12Q12852 859 aa25.32■■□□□ 1.64
UBE2D3-216ENST00000503742 SLC27A3Q5K4L6 730 aa25.32■■□□□ 1.64
UBE2D3-216ENST00000503742 PRPF40AO75400 957 aaKnown RBP25.31■■□□□ 1.64
UBE2D3-216ENST00000503742 GTF3C6Q969F1 213 aa25.31■■□□□ 1.64
UBE2D3-216ENST00000503742 CARMIL3Q8ND23 1372 aa25.31■■□□□ 1.64
UBE2D3-216ENST00000503742 FSD2A1L4K1 749 aa25.31■■□□□ 1.64
UBE2D3-216ENST00000503742 TM4SF1P30408 202 aa25.31■■□□□ 1.64
UBE2D3-216ENST00000503742 FBXL16Q8N461 479 aa25.31■■□□□ 1.64
UBE2D3-216ENST00000503742 TNRC6CQ9HCJ0 1690 aaKnown RBP25.3■■□□□ 1.64
UBE2D3-216ENST00000503742 NFIXQ14938 502 aa25.3■■□□□ 1.64
UBE2D3-216ENST00000503742 BRF1Q92994 677 aa25.3■■□□□ 1.64
UBE2D3-216ENST00000503742 LRRC2Q9BYS8 371 aa25.3■■□□□ 1.64
UBE2D3-216ENST00000503742 MTMR6Q9Y217 621 aa25.29■■□□□ 1.64
UBE2D3-216ENST00000503742 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.29■■□□□ 1.64
UBE2D3-216ENST00000503742 WTIPA6NIX2 430 aaPredicted RBP25.29■■□□□ 1.64
UBE2D3-216ENST00000503742 PDIA4P13667 645 aaKnown RBP25.29■■□□□ 1.64
UBE2D3-216ENST00000503742 CCDC24Q8N4L8 307 aa25.29■■□□□ 1.64
UBE2D3-216ENST00000503742 MAGEB6Q8N7X4 407 aa25.29■■□□□ 1.64
UBE2D3-216ENST00000503742 STRBPQ96SI9 672 aaKnown RBP25.29■■□□□ 1.64
UBE2D3-216ENST00000503742 EP400Q96L91 3159 aa25.28■■□□□ 1.64
UBE2D3-216ENST00000503742 DTNBO60941 627 aa25.28■■□□□ 1.64
UBE2D3-216ENST00000503742 F13A1P00488 732 aa25.28■■□□□ 1.64
UBE2D3-216ENST00000503742 HAND2P61296 217 aa25.28■■□□□ 1.64
UBE2D3-216ENST00000503742 STK3Q13188 491 aa25.28■■□□□ 1.64
UBE2D3-216ENST00000503742 GYG1P46976 350 aa25.27■■□□□ 1.64
UBE2D3-216ENST00000503742 ZNF213O14771 459 aa25.27■■□□□ 1.64
UBE2D3-216ENST00000503742 PFKFB2O60825 505 aa25.27■■□□□ 1.64
UBE2D3-216ENST00000503742 TRIM37O94972 964 aa25.27■■□□□ 1.64
UBE2D3-216ENST00000503742 GNL3LQ9NVN8 582 aaKnown RBP25.27■■□□□ 1.64
UBE2D3-216ENST00000503742 TCHHQ07283 1943 aa25.27■■□□□ 1.64
UBE2D3-216ENST00000503742 ALX1Q15699 326 aa25.26■■□□□ 1.63
UBE2D3-216ENST00000503742 AIDAQ96BJ3 306 aa25.26■■□□□ 1.63
UBE2D3-216ENST00000503742 ZMYM6O95789 1325 aa25.26■■□□□ 1.63
UBE2D3-216ENST00000503742 FGD1P98174 961 aa25.25■■□□□ 1.63
UBE2D3-216ENST00000503742 MB21D2Q8IYB1 491 aaPredicted RBP25.25■■□□□ 1.63
UBE2D3-216ENST00000503742 GPT2Q8TD30 523 aa25.25■■□□□ 1.63
UBE2D3-216ENST00000503742 FAM84BQ96KN1 310 aaPredicted RBP25.25■■□□□ 1.63
UBE2D3-216ENST00000503742 COL1A1P02452 1464 aaPredicted RBP25.25■■□□□ 1.63
UBE2D3-216ENST00000503742 ANKRD2Q9GZV1 360 aa25.25■■□□□ 1.63
UBE2D3-216ENST00000503742 NBPF3Q9H094 633 aa25.25■■□□□ 1.63
UBE2D3-216ENST00000503742 PDCP20941 246 aa25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 EVCP57679 992 aa25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 SCRN1Q12765 414 aa25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 CAVIN4Q5BKX8 364 aa25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 LARP1BQ659C4 914 aaKnown RBP25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 FBXO33Q7Z6M2 555 aa25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 GOLGA6L3A6NEY3 463 aa25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 GYS1P13807 737 aa25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 APOBRQ0VD83 1088 aa25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 TMEM87AQ8NBN3 555 aa25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 ATP6V1DQ9Y5K8 247 aa25.24■■□□□ 1.63
UBE2D3-216ENST00000503742 PATL2C9JE40 543 aaKnown RBP25.23■■□□□ 1.63
UBE2D3-216ENST00000503742 L1TD1Q5T7N2 865 aaKnown RBP25.23■■□□□ 1.63
UBE2D3-216ENST00000503742 CNBD1Q8NA66 436 aa25.23■■□□□ 1.63
UBE2D3-216ENST00000503742 NCOA7Q8NI08 942 aa25.23■■□□□ 1.63
UBE2D3-216ENST00000503742 ZNF274Q96GC6 653 aaPredicted RBP25.23■■□□□ 1.63
UBE2D3-216ENST00000503742 LLPHQ9BRT6 129 aaKnown RBP25.23■■□□□ 1.63
UBE2D3-216ENST00000503742 ISY1Q9ULR0 285 aaKnown RBP25.23■■□□□ 1.63
UBE2D3-216ENST00000503742 IQSEC3Q9UPP2 1182 aaPredicted RBP25.23■■□□□ 1.63
UBE2D3-216ENST00000503742 WDR19Q8NEZ3 1342 aa25.23■■□□□ 1.63
UBE2D3-216ENST00000503742 MBD4O95243 580 aa25.22■■□□□ 1.63
UBE2D3-216ENST00000503742 CHST3Q7LGC8 479 aa25.22■■□□□ 1.63
UBE2D3-216ENST00000503742 SMARCC2Q8TAQ2 1214 aa25.22■■□□□ 1.63
UBE2D3-216ENST00000503742 LRP2BPQ9P2M1 347 aa25.22■■□□□ 1.63
UBE2D3-216ENST00000503742 PNPLA7Q6ZV29 1317 aa25.22■■□□□ 1.63
UBE2D3-216ENST00000503742 FOXD4L6Q3SYB3 417 aaPredicted RBP25.22■■□□□ 1.63
UBE2D3-216ENST00000503742 FOXD4L3Q6VB84 417 aaPredicted RBP25.22■■□□□ 1.63
UBE2D3-216ENST00000503742 DENND2AQ9ULE3 1009 aa25.22■■□□□ 1.63
UBE2D3-216ENST00000503742 NPHP1O15259 732 aa25.21■■□□□ 1.63
UBE2D3-216ENST00000503742 JAK2O60674 1132 aa25.21■■□□□ 1.63
UBE2D3-216ENST00000503742 APPP05067 770 aa25.21■■□□□ 1.63
UBE2D3-216ENST00000503742 MCM5P33992 734 aa25.21■■□□□ 1.63
UBE2D3-216ENST00000503742 PRR5LQ6MZQ0 368 aa25.21■■□□□ 1.63
UBE2D3-216ENST00000503742 ARMT1Q9H993 441 aa25.21■■□□□ 1.63
UBE2D3-216ENST00000503742 EPB41L4AQ9HCS5 686 aaPredicted RBP25.21■■□□□ 1.63
UBE2D3-216ENST00000503742 SEMA3EO15041 775 aa25.2■■□□□ 1.63
UBE2D3-216ENST00000503742 ANTXR2P58335 489 aa25.2■■□□□ 1.63
UBE2D3-216ENST00000503742 TBC1D10CQ8IV04 446 aa25.2■■□□□ 1.63
UBE2D3-216ENST00000503742 PROM2Q8N271 834 aa25.2■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms