RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 DNAJC25Q9H1X3 360 aa6.87□□□□□ -1.31
SMC4-225ENST00000497203 NPHS2Q9NP85 383 aa6.87□□□□□ -1.31
SMC4-225ENST00000497203 SOX13Q9UN79 622 aa6.87□□□□□ -1.31
SMC4-225ENST00000497203 TM4SF5O14894 197 aa6.86□□□□□ -1.31
SMC4-225ENST00000497203 CCDC74AQ96AQ1 378 aa6.86□□□□□ -1.31
SMC4-225ENST00000497203 NACC1Q96RE7 527 aa6.86□□□□□ -1.31
SMC4-225ENST00000497203 CARD10Q9BWT7 1032 aa6.86□□□□□ -1.31
SMC4-225ENST00000497203 ZFP64Q9NPA5 681 aa6.86□□□□□ -1.31
SMC4-225ENST00000497203 DYRK3O43781 588 aa6.85□□□□□ -1.31
SMC4-225ENST00000497203 PLCB3Q01970 1234 aa6.85□□□□□ -1.31
SMC4-225ENST00000497203 KIAA0319Q5VV43 1072 aa6.85□□□□□ -1.31
SMC4-225ENST00000497203 ZSCAN29Q8IWY8 852 aaPredicted RBP6.85□□□□□ -1.31
SMC4-225ENST00000497203 ASAP3Q8TDY4 903 aa6.85□□□□□ -1.31
SMC4-225ENST00000497203 BSNDQ8WZ55 320 aa6.85□□□□□ -1.31
SMC4-225ENST00000497203 LENG1Q96BZ8 264 aaPredicted RBP6.85□□□□□ -1.31
SMC4-225ENST00000497203 TCF12Q99081 682 aa6.85□□□□□ -1.31
SMC4-225ENST00000497203 TPSG1Q9NRR2 321 aa6.85□□□□□ -1.31
SMC4-225ENST00000497203 PNMA6FA0A0J9YX94 578 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 FAM177BA6PVY3 158 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 C9orf172C9J069 976 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 H3BRJ5 948 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 FSCN2O14926 492 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 MBTPS1Q14703 1052 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 HGSNATQ68CP4 663 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 VN1R5Q7Z5H4 357 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 CCNJLQ8IV13 435 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 MAP4K3Q8IVH8 894 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 EPS8L3Q8TE67 593 aaKnown RBP6.84□□□□□ -1.31
SMC4-225ENST00000497203 LIN7BQ9HAP6 207 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 SRA1Q9HD15 236 aaKnown RBP6.84□□□□□ -1.31
SMC4-225ENST00000497203 USP21Q9UK80 565 aa6.84□□□□□ -1.31
SMC4-225ENST00000497203 GRIA4P48058 902 aa6.83□□□□□ -1.32
SMC4-225ENST00000497203 CABP4P57796 275 aa6.83□□□□□ -1.32
SMC4-225ENST00000497203 FMR1Q06787 632 aaKnown RBP eCLIP6.83□□□□□ -1.32
SMC4-225ENST00000497203 ADGRE1Q14246 886 aa6.83□□□□□ -1.32
SMC4-225ENST00000497203 ENOX2Q16206 610 aaKnown RBP6.83□□□□□ -1.32
SMC4-225ENST00000497203 SPRED3Q2MJR0 410 aa6.83□□□□□ -1.32
SMC4-225ENST00000497203 IGF2-ASQ6U949 168 aa6.83□□□□□ -1.32
SMC4-225ENST00000497203 PI16Q6UXB8 463 aa6.83□□□□□ -1.32
SMC4-225ENST00000497203 FOXD4L4Q8WXT5 416 aaPredicted RBP6.83□□□□□ -1.32
SMC4-225ENST00000497203 KLHDC7BQ96G42 594 aa6.83□□□□□ -1.32
SMC4-225ENST00000497203 KRTAP17-1Q9BYP8 105 aa6.83□□□□□ -1.32
SMC4-225ENST00000497203 EHD4Q9H223 541 aa6.83□□□□□ -1.32
SMC4-225ENST00000497203 KCNK4Q9NYG8 393 aa6.83□□□□□ -1.32
SMC4-225ENST00000497203 MAPK8P45983 427 aa6.82□□□□□ -1.32
SMC4-225ENST00000497203 NRG1Q02297 640 aaPredicted RBP6.82□□□□□ -1.32
SMC4-225ENST00000497203 FAM117BQ6P1L5 589 aa6.82□□□□□ -1.32
SMC4-225ENST00000497203 DNAJC14Q6Y2X3 702 aaPredicted RBP6.82□□□□□ -1.32
SMC4-225ENST00000497203 SLC7A3Q8WY07 619 aa6.82□□□□□ -1.32
SMC4-225ENST00000497203 SETDB2Q96T68 719 aa6.82□□□□□ -1.32
SMC4-225ENST00000497203 SEC31BQ9NQW1 1179 aa6.82□□□□□ -1.32
SMC4-225ENST00000497203 A0A096LPE4 126 aa6.81□□□□□ -1.32
SMC4-225ENST00000497203 A0A1W2PPZ6 126 aa6.81□□□□□ -1.32
SMC4-225ENST00000497203 SOX1O00570 391 aaPredicted RBP6.81□□□□□ -1.32
SMC4-225ENST00000497203 DDX3YO15523 660 aaKnown RBP6.81□□□□□ -1.32
SMC4-225ENST00000497203 ADAM11O75078 769 aa6.81□□□□□ -1.32
SMC4-225ENST00000497203 GADD45BO75293 160 aaPredicted RBP6.81□□□□□ -1.32
SMC4-225ENST00000497203 CD68P34810 354 aaPredicted RBP6.81□□□□□ -1.32
SMC4-225ENST00000497203 PIP4K2BP78356 416 aa6.81□□□□□ -1.32
SMC4-225ENST00000497203 IKBKEQ14164 716 aa6.81□□□□□ -1.32
SMC4-225ENST00000497203 GRM2Q14416 872 aa6.81□□□□□ -1.32
SMC4-225ENST00000497203 KLHL23Q8NBE8 558 aa6.81□□□□□ -1.32
SMC4-225ENST00000497203 ABCB6Q9NP58 842 aa6.81□□□□□ -1.32
SMC4-225ENST00000497203 COBLO75128 1261 aa6.8□□□□□ -1.32
SMC4-225ENST00000497203 WISP1O95388 367 aa6.8□□□□□ -1.32
SMC4-225ENST00000497203 P4HBP07237 508 aaKnown RBP6.8□□□□□ -1.32
SMC4-225ENST00000497203 ESRRAP11474 423 aaPredicted RBP6.8□□□□□ -1.32
SMC4-225ENST00000497203 TXNRD3Q86VQ6 643 aa6.8□□□□□ -1.32
SMC4-225ENST00000497203 GLIS3Q8NEA6 775 aa6.8□□□□□ -1.32
SMC4-225ENST00000497203 WFDC12Q8WWY7 111 aa6.8□□□□□ -1.32
SMC4-225ENST00000497203 WNT8BQ93098 351 aa6.8□□□□□ -1.32
SMC4-225ENST00000497203 MRPL18Q9H0U6 180 aaKnown RBP6.8□□□□□ -1.32
SMC4-225ENST00000497203 WWC3Q9ULE0 1092 aa6.8□□□□□ -1.32
SMC4-225ENST00000497203 ARID1BQ8NFD5 2236 aaPredicted RBP6.8□□□□□ -1.32
SMC4-225ENST00000497203 ALX3O95076 343 aa6.79□□□□□ -1.32
SMC4-225ENST00000497203 NOS3P29474 1203 aa6.79□□□□□ -1.32
SMC4-225ENST00000497203 IREB2P48200 963 aaKnown RBP6.79□□□□□ -1.32
SMC4-225ENST00000497203 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.79□□□□□ -1.32
SMC4-225ENST00000497203 PRSS36Q5K4E3 855 aa6.79□□□□□ -1.32
SMC4-225ENST00000497203 PRPF40BQ6NWY9 871 aaKnown RBP6.79□□□□□ -1.32
SMC4-225ENST00000497203 AGGF1Q8N302 714 aaeCLIP6.79□□□□□ -1.32
SMC4-225ENST00000497203 DCAF11Q8TEB1 546 aa6.79□□□□□ -1.32
SMC4-225ENST00000497203 OSGEPQ9NPF4 335 aa6.79□□□□□ -1.32
SMC4-225ENST00000497203 ANKRD33BA6NCL7 494 aa6.78□□□□□ -1.32
SMC4-225ENST00000497203 F8W735 103 aaPredicted RBP6.78□□□□□ -1.32
SMC4-225ENST00000497203 ITPKAP23677 461 aa6.78□□□□□ -1.32
SMC4-225ENST00000497203 RBM25P49756 843 aaKnown RBP6.78□□□□□ -1.32
SMC4-225ENST00000497203 NLRP12P59046 1061 aa6.78□□□□□ -1.32
SMC4-225ENST00000497203 PCDH1Q08174 1060 aa6.78□□□□□ -1.32
SMC4-225ENST00000497203 C19orf57Q0VDD7 668 aa6.78□□□□□ -1.32
SMC4-225ENST00000497203 ZNF423Q2M1K9 1284 aa6.78□□□□□ -1.32
SMC4-225ENST00000497203 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.78□□□□□ -1.32
SMC4-225ENST00000497203 TMEM130Q8N3G9 435 aa6.78□□□□□ -1.32
SMC4-225ENST00000497203 UBASH3BQ8TF42 649 aa6.78□□□□□ -1.32
SMC4-225ENST00000497203 CLEC4MQ9H2X3 399 aaPredicted RBP6.78□□□□□ -1.32
SMC4-225ENST00000497203 AKTIPQ9H8T0 292 aa6.78□□□□□ -1.32
SMC4-225ENST00000497203 NLRP2Q9NX02 1062 aa6.78□□□□□ -1.32
SMC4-225ENST00000497203 TMEM238LA0A1B0GVL6 79 aa6.77□□□□□ -1.33
SMC4-225ENST00000497203 RBM47A0AV96 593 aaKnown RBP6.77□□□□□ -1.33
SMC4-225ENST00000497203 ARL4DP49703 201 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms