RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 CCDC62Q6P9F0 684 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 GPATCH11Q8N954 259 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 PRDM10Q9NQV6 1147 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 PAPOLBQ9NRJ5 636 aaKnown RBP6.55□□□□□ -1.36
USF3-204ENST00000496826 ZNF277Q9NRM2 450 aaPredicted RBP6.55□□□□□ -1.36
USF3-204ENST00000496826 AIPL1Q9NZN9 384 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 ATPIF1Q9UII2 106 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 SLC12A1Q13621 1099 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 HACE1Q8IYU2 909 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 ZGPATQ8N5A5 531 aaKnown RBP6.55□□□□□ -1.36
USF3-204ENST00000496826 MPHOSPH8Q99549 860 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 PIGUQ9H490 435 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 TSKSQ9UJT2 592 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 TCF3P15923 654 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 DENND2CQ68D51 928 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 MAP7D3Q8IWC1 876 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 CUEDC2Q9H467 287 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.55□□□□□ -1.36
USF3-204ENST00000496826 PAIP2BQ9ULR5 123 aaKnown RBP6.55□□□□□ -1.36
USF3-204ENST00000496826 GUCY1B2O75343 617 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 SERPINB6P35237 376 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 PRKCQQ04759 706 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 RASSF5Q8WWW0 418 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 BRF1Q92994 677 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.55□□□□□ -1.36
USF3-204ENST00000496826 INTUQ9ULD6 942 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 A0A087WZG4 1122 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 CAVIN2O95810 425 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 CA8P35219 290 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 ARHGAP4P98171 946 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 OLFML2BQ68BL8 750 aa6.55□□□□□ -1.36
USF3-204ENST00000496826 IPO11Q9UI26 975 aaKnown RBP6.55□□□□□ -1.36
USF3-204ENST00000496826 ADCY8P40145 1251 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 KRT76Q01546 638 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 CCDC183Q5T5S1 534 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 BICDL1Q6ZP65 573 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 CCDC13Q8IYE1 715 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 OXCT2Q9BYC2 517 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 AFG3L2Q9Y4W6 797 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 GOLGA8TH3BQL2 631 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 GOLGA8HP0CJ92 632 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 NR5A1Q13285 461 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 ZBTB41Q5SVQ8 909 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 OTUB1Q96FW1 271 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 BCL2L12Q9HB09 334 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 TSHZ2Q9NRE2 1034 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 CTNNA3Q9UI47 895 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 RAD50Q92878 1312 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 ARHGAP42A6NI28 874 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 CALML3P27482 149 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 STK38Q15208 465 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 KIF9Q9HAQ2 790 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 GRPEL1Q9HAV7 217 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 SCAPERQ9BY12 1400 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 FRMD3A2A2Y4 597 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 GOLGA8IPA6NC78 632 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 RASSF10A6NK89 507 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 C11orf95C9JLR9 678 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 CEP104O60308 925 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 TP53BP2Q13625 1128 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 ZNF830Q96NB3 372 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 SFPQP23246 707 aaKnown RBP eCLIP6.54□□□□□ -1.36
USF3-204ENST00000496826 GTF2A1P52655 376 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 INF2Q27J81 1249 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 ACBD5Q5T8D3 534 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 SPTY2D1Q68D10 685 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 TRMT44Q8IYL2 757 aaKnown RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 PHKBQ93100 1093 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 EFCC1Q9HA90 598 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 NUTM2DQ5VT03 806 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 NUTM2AQ8IVF1 878 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 SAMD15Q9P1V8 674 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 KCNG1Q9UIX4 513 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 SCINQ9Y6U3 715 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 LRRC23Q53EV4 343 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 HP1BP3Q5SSJ5 553 aaPredicted RBP6.54□□□□□ -1.36
USF3-204ENST00000496826 CCDC121Q6ZUS5 278 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 MCF2L2Q86YR7 1114 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 MPNDQ8N594 471 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 SLC4A7Q9Y6M7 1214 aa6.54□□□□□ -1.36
USF3-204ENST00000496826 H0YC42 278 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 YEATS4O95619 227 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 EIF2S1P05198 315 aaKnown RBP6.53□□□□□ -1.36
USF3-204ENST00000496826 DYNC1I2Q13409 638 aaKnown RBP6.53□□□□□ -1.36
USF3-204ENST00000496826 TCERG1LQ5VWI1 586 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 B4GALNT4Q76KP1 1039 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 BTN2A1Q7KYR7 527 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 IFIH1Q9BYX4 1025 aaKnown RBP6.53□□□□□ -1.36
USF3-204ENST00000496826 LZTS3O60299 673 aaPredicted RBP6.53□□□□□ -1.36
USF3-204ENST00000496826 TSC22D1Q15714 1073 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 PHLDB3Q6NSJ2 640 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 CAMK1DQ8IU85 385 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 ZNF653Q96CK0 615 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 SMARCAD1Q9H4L7 1026 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 TRAK1Q9UPV9 953 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 CENPSQ8N2Z9 138 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 OR9Q1Q8NGQ5 310 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 PHF21AQ96BD5 680 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 TRIM11Q96F44 468 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms