RNA–Protein interactions for RNA: ENST00000496393.2

NVL-223, Transcript of nuclear VCP-like, human

TSL 3

Gene NVL, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NVL-223	ENST00000496393	TRIM28	Q13263	835 aa	Known RBP	10.16	□□□□□ -0.78
NVL-223	ENST00000496393	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.16	□□□□□ -0.78
NVL-223	ENST00000496393	MBIP	Q9NS73	344 aa		10.16	□□□□□ -0.78
NVL-223	ENST00000496393	WNT10B	O00744	389 aa		10.15	□□□□□ -0.78
NVL-223	ENST00000496393	PDE8A	O60658	829 aa		10.15	□□□□□ -0.78
NVL-223	ENST00000496393	FKTN	O75072	461 aa		10.15	□□□□□ -0.78
NVL-223	ENST00000496393	ATP2B4	P23634	1241 aa		10.15	□□□□□ -0.78
NVL-223	ENST00000496393	NF2	P35240	595 aa		10.15	□□□□□ -0.78
NVL-223	ENST00000496393	DACT2	Q5SW24	774 aa		10.15	□□□□□ -0.78
NVL-223	ENST00000496393	PODN	Q7Z5L7	613 aa		10.15	□□□□□ -0.78
NVL-223	ENST00000496393	CWC25	Q9NXE8	425 aa	Predicted RBP	10.15	□□□□□ -0.78
NVL-223	ENST00000496393	MED23	Q9ULK4	1368 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	POTEB3	A0JP26	581 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	PCCA	P05165	728 aa	Predicted RBP	10.14	□□□□□ -0.79
NVL-223	ENST00000496393	KLRK1	P26718	216 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	TM4SF4	P48230	202 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	SREBF2	Q12772	1141 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	POTEB	Q6S5H4	581 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	KIAA0825	Q8IV33	1275 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	OGFOD1	Q8N543	542 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	CCDC191	Q8NCU4	936 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	RUNDC1	Q96C34	613 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	ANGEL1	Q9UNK9	670 aa	Known RBP	10.14	□□□□□ -0.79
NVL-223	ENST00000496393	TRIM17	Q9Y577	477 aa		10.14	□□□□□ -0.79
NVL-223	ENST00000496393	HSP90B1	P14625	803 aa	Known RBP	10.13	□□□□□ -0.79
NVL-223	ENST00000496393	CTSW	P56202	376 aa		10.13	□□□□□ -0.79
NVL-223	ENST00000496393	WDR43	Q15061	677 aa	Known RBP eCLIP	10.13	□□□□□ -0.79
NVL-223	ENST00000496393	ARMC9	Q7Z3E5	817 aa		10.13	□□□□□ -0.79
NVL-223	ENST00000496393	TXNRD3	Q86VQ6	643 aa		10.13	□□□□□ -0.79
NVL-223	ENST00000496393	CDC5L	Q99459	802 aa	Known RBP	10.13	□□□□□ -0.79
NVL-223	ENST00000496393	GREM2	Q9H772	168 aa		10.13	□□□□□ -0.79
NVL-223	ENST00000496393	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.13	□□□□□ -0.79
NVL-223	ENST00000496393	CCT4	P50991	539 aa	Known RBP	10.12	□□□□□ -0.79
NVL-223	ENST00000496393	NOM1	Q5C9Z4	860 aa	Known RBP	10.12	□□□□□ -0.79
NVL-223	ENST00000496393	SPRYD7	Q5W111	196 aa		10.12	□□□□□ -0.79
NVL-223	ENST00000496393	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.12	□□□□□ -0.79
NVL-223	ENST00000496393	CLMN	Q96JQ2	1002 aa		10.12	□□□□□ -0.79
NVL-223	ENST00000496393	MINPP1	Q9UNW1	487 aa		10.12	□□□□□ -0.79
NVL-223	ENST00000496393	SSC5D	A1L4H1	1573 aa		10.12	□□□□□ -0.79
NVL-223	ENST00000496393	MYH3	P11055	1940 aa		10.11	□□□□□ -0.79
NVL-223	ENST00000496393	MYO3B	Q8WXR4	1341 aa		10.11	□□□□□ -0.79
NVL-223	ENST00000496393	PDAP1	Q13442	181 aa	Known RBP	10.11	□□□□□ -0.79
NVL-223	ENST00000496393	RALBP1	Q15311	655 aa		10.11	□□□□□ -0.79
NVL-223	ENST00000496393	HABP4	Q5JVS0	413 aa	Known RBP	10.11	□□□□□ -0.79
NVL-223	ENST00000496393	STRIP1	Q5VSL9	837 aa		10.11	□□□□□ -0.79
NVL-223	ENST00000496393	OTOP1	Q7RTM1	612 aa		10.11	□□□□□ -0.79
NVL-223	ENST00000496393	GCC1	Q96CN9	775 aa		10.11	□□□□□ -0.79
NVL-223	ENST00000496393	METTL22	Q9BUU2	404 aa	Predicted RBP	10.11	□□□□□ -0.79
NVL-223	ENST00000496393	ADAMTS8	Q9UP79	889 aa		10.11	□□□□□ -0.79
NVL-223	ENST00000496393	MAP3K2	Q9Y2U5	619 aa		10.11	□□□□□ -0.79
NVL-223	ENST00000496393	PCDHAC2	Q9Y5I4	1007 aa		10.11	□□□□□ -0.79
NVL-223	ENST00000496393	HTT	P42858	3142 aa		10.11	□□□□□ -0.79
NVL-223	ENST00000496393	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.1	□□□□□ -0.79
NVL-223	ENST00000496393	CLRN2	A0PK11	232 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393		F8W031	263 aa	Predicted RBP	10.1	□□□□□ -0.79
NVL-223	ENST00000496393	IGF2BP3	O00425	579 aa	Known RBP eCLIP	10.1	□□□□□ -0.79
NVL-223	ENST00000496393	IGKV5-2	P06315	115 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393	GTF2I	P78347	998 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393	CWF19L2	Q2TBE0	894 aa	Known RBP	10.1	□□□□□ -0.79
NVL-223	ENST00000496393	LDLRAD1	Q5T700	205 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393	TTLL5	Q6EMB2	1281 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393	C8orf58	Q8NAV2	365 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393	TTLL11	Q8NHH1	800 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393	CD99L2	Q8TCZ2	262 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393	WNK4	Q96J92	1243 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393	CFHR5	Q9BXR6	569 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393	COA1	Q9GZY4	146 aa		10.1	□□□□□ -0.79
NVL-223	ENST00000496393	BSDC1	Q9NW68	430 aa	Predicted RBP	10.1	□□□□□ -0.79
NVL-223	ENST00000496393	ZNF804B	A4D1E1	1349 aa		10.09	□□□□□ -0.79
NVL-223	ENST00000496393	KIAA0100	Q14667	2235 aa	Known RBP	10.09	□□□□□ -0.79
NVL-223	ENST00000496393	MANSC4	A6NHS7	340 aa	Predicted RBP	10.09	□□□□□ -0.79
NVL-223	ENST00000496393	DDX58	O95786	925 aa	Known RBP	10.09	□□□□□ -0.79
NVL-223	ENST00000496393	ZNF853	P0CG23	659 aa		10.09	□□□□□ -0.79
NVL-223	ENST00000496393	EN2	P19622	333 aa	Predicted RBP	10.09	□□□□□ -0.79
NVL-223	ENST00000496393	KCNJ4	P48050	445 aa		10.09	□□□□□ -0.79
NVL-223	ENST00000496393	EMP3	P54852	163 aa		10.09	□□□□□ -0.79
NVL-223	ENST00000496393	UBE3B	Q7Z3V4	1068 aa		10.09	□□□□□ -0.79
NVL-223	ENST00000496393	SPOCK2	Q92563	424 aa		10.09	□□□□□ -0.79
NVL-223	ENST00000496393	SLC10A4	Q96EP9	437 aa		10.09	□□□□□ -0.79
NVL-223	ENST00000496393	DEFB129	Q9H1M3	183 aa		10.09	□□□□□ -0.79
NVL-223	ENST00000496393	VEZT	Q9HBM0	779 aa		10.09	□□□□□ -0.79
NVL-223	ENST00000496393	JAG2	Q9Y219	1238 aa		10.09	□□□□□ -0.79
NVL-223	ENST00000496393	AOX1	Q06278	1338 aa		10.08	□□□□□ -0.8
NVL-223	ENST00000496393	PI4KAP2	A4QPH2	592 aa		10.08	□□□□□ -0.8
NVL-223	ENST00000496393	SNAP23	O00161	211 aa		10.08	□□□□□ -0.8
NVL-223	ENST00000496393	ALDH1A1	P00352	501 aa		10.08	□□□□□ -0.8
NVL-223	ENST00000496393	IGHMBP2	P38935	993 aa	Known RBP	10.08	□□□□□ -0.8
NVL-223	ENST00000496393	CAP1	Q01518	475 aa		10.08	□□□□□ -0.8
NVL-223	ENST00000496393	CRHR2	Q13324	411 aa		10.08	□□□□□ -0.8
NVL-223	ENST00000496393	DLGAP5	Q15398	846 aa		10.08	□□□□□ -0.8
NVL-223	ENST00000496393	PI4KAP1	Q8N8J0	262 aa		10.08	□□□□□ -0.8
NVL-223	ENST00000496393	ZBED3	Q96IU2	234 aa	Predicted RBP	10.08	□□□□□ -0.8
NVL-223	ENST00000496393	IFT57	Q9NWB7	429 aa		10.08	□□□□□ -0.8
NVL-223	ENST00000496393	COL1A1	P02452	1464 aa	Predicted RBP	10.08	□□□□□ -0.8
NVL-223	ENST00000496393	RBBP6	Q7Z6E9	1792 aa	Known RBP	10.08	□□□□□ -0.8
NVL-223	ENST00000496393	MKI67	P46013	3256 aa	Known RBP	10.08	□□□□□ -0.8
NVL-223	ENST00000496393	OTOF	Q9HC10	1997 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	FAM205C	A6NFA0	338 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	NEURL1B	A8MQ27	555 aa		10.07	□□□□□ -0.8
NVL-223	ENST00000496393	APAF1	O14727	1248 aa		10.07	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms