RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 TMEM88BA6NKF7 163 aa20.25■□□□□ 0.83
SF3A1-209ENST00000496189 FGFR2P21802 821 aa20.25■□□□□ 0.83
SF3A1-209ENST00000496189 HIRAP54198 1017 aaPredicted RBP20.25■□□□□ 0.83
SF3A1-209ENST00000496189 RRP1P56182 461 aaKnown RBP20.25■□□□□ 0.83
SF3A1-209ENST00000496189 FBXO33Q7Z6M2 555 aa20.25■□□□□ 0.83
SF3A1-209ENST00000496189 TBC1D22AQ8WUA7 517 aa20.25■□□□□ 0.83
SF3A1-209ENST00000496189 MXD3Q9BW11 206 aa20.25■□□□□ 0.83
SF3A1-209ENST00000496189 FAM205AQ6ZU69 1335 aa20.25■□□□□ 0.83
SF3A1-209ENST00000496189 CHAF1AQ13111 956 aaPredicted RBP20.24■□□□□ 0.83
SF3A1-209ENST00000496189 MFSD14BQ5SR56 506 aa20.24■□□□□ 0.83
SF3A1-209ENST00000496189 SULF1Q8IWU6 871 aa20.24■□□□□ 0.83
SF3A1-209ENST00000496189 BCAMP50895 628 aa20.23■□□□□ 0.83
SF3A1-209ENST00000496189 SCARF1Q14162 830 aa20.23■□□□□ 0.83
SF3A1-209ENST00000496189 KRT26Q7Z3Y9 468 aa20.23■□□□□ 0.83
SF3A1-209ENST00000496189 SSH3Q8TE77 659 aa20.23■□□□□ 0.83
SF3A1-209ENST00000496189 GGA3Q9NZ52 723 aa20.23■□□□□ 0.83
SF3A1-209ENST00000496189 IQSEC3Q9UPP2 1182 aaPredicted RBP20.23■□□□□ 0.83
SF3A1-209ENST00000496189 JAG2Q9Y219 1238 aa20.23■□□□□ 0.83
SF3A1-209ENST00000496189 F8W031 263 aaPredicted RBP20.22■□□□□ 0.83
SF3A1-209ENST00000496189 MYO1BO43795 1136 aa20.22■□□□□ 0.83
SF3A1-209ENST00000496189 HMMRO75330 724 aa20.22■□□□□ 0.83
SF3A1-209ENST00000496189 SURF6O75683 361 aaKnown RBP20.22■□□□□ 0.83
SF3A1-209ENST00000496189 EGFRP00533 1210 aa20.22■□□□□ 0.83
SF3A1-209ENST00000496189 TFCP2Q12800 502 aa20.22■□□□□ 0.83
SF3A1-209ENST00000496189 DLGAP5Q15398 846 aa20.22■□□□□ 0.83
SF3A1-209ENST00000496189 GORABQ5T7V8 394 aa20.22■□□□□ 0.83
SF3A1-209ENST00000496189 GLIS2Q9BZE0 524 aaPredicted RBP20.22■□□□□ 0.83
SF3A1-209ENST00000496189 RBM5P52756 815 aaKnown RBP eCLIP20.21■□□□□ 0.83
SF3A1-209ENST00000496189 POLA2Q14181 598 aa20.21■□□□□ 0.83
SF3A1-209ENST00000496189 NEUROD6Q96NK8 337 aa20.21■□□□□ 0.83
SF3A1-209ENST00000496189 ABT1Q9ULW3 272 aaKnown RBP20.21■□□□□ 0.83
SF3A1-209ENST00000496189 HTRA3P83110 453 aa20.2■□□□□ 0.82
SF3A1-209ENST00000496189 C20orf194Q5TEA3 1177 aa20.2■□□□□ 0.82
SF3A1-209ENST00000496189 ANGEL2Q5VTE6 544 aaKnown RBP20.2■□□□□ 0.82
SF3A1-209ENST00000496189 USP48Q86UV5 1035 aa20.2■□□□□ 0.82
SF3A1-209ENST00000496189 RPAP2Q8IXW5 612 aaPredicted RBP20.2■□□□□ 0.82
SF3A1-209ENST00000496189 CERS5Q8N5B7 392 aa20.2■□□□□ 0.82
SF3A1-209ENST00000496189 WDR66Q8TBY9 1149 aa20.2■□□□□ 0.82
SF3A1-209ENST00000496189 ZNF408Q9H9D4 720 aa20.2■□□□□ 0.82
SF3A1-209ENST00000496189 MAST3O60307 1309 aa20.2■□□□□ 0.82
SF3A1-209ENST00000496189 PITPNM2Q9BZ72 1349 aa20.2■□□□□ 0.82
SF3A1-209ENST00000496189 ZNF646O15015 1829 aaPredicted RBP20.19■□□□□ 0.82
SF3A1-209ENST00000496189 A0A1B0GUL7 405 aa20.19■□□□□ 0.82
SF3A1-209ENST00000496189 SEMA3EO15041 775 aa20.19■□□□□ 0.82
SF3A1-209ENST00000496189 HSP90AB4PQ58FF6 505 aa20.19■□□□□ 0.82
SF3A1-209ENST00000496189 CEP85Q6P2H3 762 aa20.19■□□□□ 0.82
SF3A1-209ENST00000496189 DENND2AQ9ULE3 1009 aa20.19■□□□□ 0.82
SF3A1-209ENST00000496189 TTF2Q9UNY4 1162 aaKnown RBP20.19■□□□□ 0.82
SF3A1-209ENST00000496189 TRAF5O00463 557 aa20.18■□□□□ 0.82
SF3A1-209ENST00000496189 WNT10BO00744 389 aa20.18■□□□□ 0.82
SF3A1-209ENST00000496189 CELF2O95319 508 aaKnown RBP20.18■□□□□ 0.82
SF3A1-209ENST00000496189 ERC1Q8IUD2 1116 aa20.18■□□□□ 0.82
SF3A1-209ENST00000496189 KLRG1Q96E93 195 aa20.18■□□□□ 0.82
SF3A1-209ENST00000496189 TIMM10P62072 90 aa20.17■□□□□ 0.82
SF3A1-209ENST00000496189 NBPF9Q3BBW0 867 aa20.17■□□□□ 0.82
SF3A1-209ENST00000496189 CFAP100Q494V2 611 aa20.17■□□□□ 0.82
SF3A1-209ENST00000496189 APOBEC3FQ8IUX4 373 aaKnown RBP20.17■□□□□ 0.82
SF3A1-209ENST00000496189 ZBTB40Q9NUA8 1239 aa20.17■□□□□ 0.82
SF3A1-209ENST00000496189 SUGT1Q9Y2Z0 365 aa20.17■□□□□ 0.82
SF3A1-209ENST00000496189 MYH13Q9UKX3 1938 aa20.17■□□□□ 0.82
SF3A1-209ENST00000496189 ARAP2Q8WZ64 1704 aa20.16■□□□□ 0.82
SF3A1-209ENST00000496189 TRPM7Q96QT4 1865 aa20.16■□□□□ 0.82
SF3A1-209ENST00000496189 CCDC102BQ68D86 513 aa20.16■□□□□ 0.82
SF3A1-209ENST00000496189 ZGPATQ8N5A5 531 aaKnown RBP20.16■□□□□ 0.82
SF3A1-209ENST00000496189 MTMR14Q8NCE2 650 aa20.16■□□□□ 0.82
SF3A1-209ENST00000496189 XAGE2Q96GT9 111 aa20.16■□□□□ 0.82
SF3A1-209ENST00000496189 SERPINA10Q9UK55 444 aa20.16■□□□□ 0.82
SF3A1-209ENST00000496189 ADM5C9JUS6 153 aa20.15■□□□□ 0.82
SF3A1-209ENST00000496189 NF2P35240 595 aa20.15■□□□□ 0.82
SF3A1-209ENST00000496189 PAXIP1Q6ZW49 1069 aaPredicted RBP20.15■□□□□ 0.82
SF3A1-209ENST00000496189 GPR108Q9NPR9 543 aa20.15■□□□□ 0.82
SF3A1-209ENST00000496189 NOP58Q9Y2X3 529 aaKnown RBP20.15■□□□□ 0.82
SF3A1-209ENST00000496189 ADORA1P30542 326 aa20.14■□□□□ 0.81
SF3A1-209ENST00000496189 PHKA1P46020 1223 aa20.14■□□□□ 0.81
SF3A1-209ENST00000496189 DEFB115Q30KQ5 88 aa20.14■□□□□ 0.81
SF3A1-209ENST00000496189 C2orf69Q8N8R5 385 aa20.14■□□□□ 0.81
SF3A1-209ENST00000496189 TEKT1Q969V4 418 aa20.14■□□□□ 0.81
SF3A1-209ENST00000496189 MKRN1Q9UHC7 482 aaKnown RBP20.14■□□□□ 0.81
SF3A1-209ENST00000496189 SUPT16HQ9Y5B9 1047 aaKnown RBP20.14■□□□□ 0.81
SF3A1-209ENST00000496189 ASTN2O75129 1339 aaPredicted RBP20.13■□□□□ 0.81
SF3A1-209ENST00000496189 SPDYE2BA6NHP3 402 aa20.13■□□□□ 0.81
SF3A1-209ENST00000496189 SPDYE6P0CI01 402 aa20.13■□□□□ 0.81
SF3A1-209ENST00000496189 HDLBPQ00341 1268 aaKnown RBP20.13■□□□□ 0.81
SF3A1-209ENST00000496189 FMR1Q06787 632 aaKnown RBP eCLIP20.13■□□□□ 0.812e-8■■□□□ 12
SF3A1-209ENST00000496189 CCDC158Q5M9N0 1113 aa20.13■□□□□ 0.81
SF3A1-209ENST00000496189 DNAJC5GQ8N7S2 189 aa20.13■□□□□ 0.81
SF3A1-209ENST00000496189 CNTNAP1P78357 1384 aa20.12■□□□□ 0.81
SF3A1-209ENST00000496189 LDHBP07195 334 aaKnown RBP20.12■□□□□ 0.81
SF3A1-209ENST00000496189 UQCRFS1P1P0C7P4 283 aa20.12■□□□□ 0.81
SF3A1-209ENST00000496189 TNFAIP1Q13829 316 aa20.12■□□□□ 0.81
SF3A1-209ENST00000496189 TNNI3KQ59H18 835 aa20.12■□□□□ 0.81
SF3A1-209ENST00000496189 CST9Q5W186 159 aa20.12■□□□□ 0.81
SF3A1-209ENST00000496189 CDCA5Q96FF9 252 aa20.12■□□□□ 0.81
SF3A1-209ENST00000496189 EXOC6BQ9Y2D4 811 aa20.12■□□□□ 0.81
SF3A1-209ENST00000496189 FPGT-TNNI3KV9GXZ4 949 aa20.12■□□□□ 0.81
SF3A1-209ENST00000496189 PDS5AQ29RF7 1337 aaKnown RBP20.11■□□□□ 0.81
SF3A1-209ENST00000496189 ECE1P42892 770 aa20.11■□□□□ 0.81
SF3A1-209ENST00000496189 CRKP46108 304 aa20.11■□□□□ 0.81
SF3A1-209ENST00000496189 TTC39AQ5SRH9 613 aa20.11■□□□□ 0.81
SF3A1-209ENST00000496189 SPTY2D1Q68D10 685 aaPredicted RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms