RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CTU1Q7Z7A3 348 aaKnown RBP14.65□□□□□ -0.06
COL6A3-213ENST00000493475 CSRNP1Q96S65 589 aa14.65□□□□□ -0.06
COL6A3-213ENST00000493475 ZIC5Q96T25 663 aa14.65□□□□□ -0.06
COL6A3-213ENST00000493475 CNNM1Q9NRU3 951 aa14.65□□□□□ -0.06
COL6A3-213ENST00000493475 PPP2R3BQ9Y5P8 575 aa14.65□□□□□ -0.06
COL6A3-213ENST00000493475 PPP1R12BO60237 982 aaPredicted RBP14.64□□□□□ -0.07
COL6A3-213ENST00000493475 RGS19P49795 217 aa14.64□□□□□ -0.07
COL6A3-213ENST00000493475 LDHAL6AQ6ZMR3 332 aa14.64□□□□□ -0.07
COL6A3-213ENST00000493475 CD209Q9NNX6 404 aa14.64□□□□□ -0.07
COL6A3-213ENST00000493475 UBE2Q2LH0YL09 131 aa14.63□□□□□ -0.07
COL6A3-213ENST00000493475 GRM8O00222 908 aa14.63□□□□□ -0.07
COL6A3-213ENST00000493475 SASH1O94885 1247 aa14.63□□□□□ -0.07
COL6A3-213ENST00000493475 ALDH1A1P00352 501 aa14.63□□□□□ -0.07
COL6A3-213ENST00000493475 SUPT20HL1Q3ZLR7 823 aa14.63□□□□□ -0.07
COL6A3-213ENST00000493475 CCDC184Q52MB2 194 aa14.63□□□□□ -0.07
COL6A3-213ENST00000493475 C15orf52Q6ZUT6 534 aaKnown RBP14.63□□□□□ -0.07
COL6A3-213ENST00000493475 CACNA1FO60840 1977 aa14.62□□□□□ -0.07
COL6A3-213ENST00000493475 ZNF316A6NFI3 1004 aaPredicted RBP14.62□□□□□ -0.07
COL6A3-213ENST00000493475 ALDH1L1O75891 902 aa14.62□□□□□ -0.07
COL6A3-213ENST00000493475 CASP7P55210 303 aa14.62□□□□□ -0.07
COL6A3-213ENST00000493475 INHBEP58166 350 aa14.62□□□□□ -0.07
COL6A3-213ENST00000493475 FKBP1AP62942 108 aaKnown RBP14.62□□□□□ -0.07
COL6A3-213ENST00000493475 TNFAIP1Q13829 316 aa14.62□□□□□ -0.07
COL6A3-213ENST00000493475 MXD3Q9BW11 206 aa14.62□□□□□ -0.07
COL6A3-213ENST00000493475 SRCIN1Q9C0H9 1055 aa14.62□□□□□ -0.07
COL6A3-213ENST00000493475 UNCXA6NJT0 531 aa14.61□□□□□ -0.07
COL6A3-213ENST00000493475 RBM5P52756 815 aaKnown RBP eCLIP14.61□□□□□ -0.07
COL6A3-213ENST00000493475 BEND3Q5T5X7 828 aa14.61□□□□□ -0.07
COL6A3-213ENST00000493475 SLC4A10Q6U841 1118 aa14.61□□□□□ -0.07
COL6A3-213ENST00000493475 LMBR1LQ6UX01 489 aa14.61□□□□□ -0.07
COL6A3-213ENST00000493475 TXNRD3Q86VQ6 643 aa14.61□□□□□ -0.07
COL6A3-213ENST00000493475 VPS37DQ86XT2 251 aa14.61□□□□□ -0.07
COL6A3-213ENST00000493475 POLR2AP24928 1970 aaKnown RBP14.61□□□□□ -0.07
COL6A3-213ENST00000493475 SPEF2Q9C093 1822 aa14.61□□□□□ -0.07
COL6A3-213ENST00000493475 AKAP11Q9UKA4 1901 aa14.6□□□□□ -0.07
COL6A3-213ENST00000493475 PLIN1O60240 522 aa14.6□□□□□ -0.07
COL6A3-213ENST00000493475 TAF5LO75529 589 aa14.6□□□□□ -0.07
COL6A3-213ENST00000493475 IL1R1P14778 569 aa14.6□□□□□ -0.07
COL6A3-213ENST00000493475 OTUD7BQ6GQQ9 843 aa14.6□□□□□ -0.07
COL6A3-213ENST00000493475 FAM9BQ8IZU0 186 aa14.6□□□□□ -0.07
COL6A3-213ENST00000493475 MTMR14Q8NCE2 650 aa14.6□□□□□ -0.07
COL6A3-213ENST00000493475 DEFB129Q9H1M3 183 aa14.6□□□□□ -0.07
COL6A3-213ENST00000493475 ANGEL1Q9UNK9 670 aaKnown RBP14.6□□□□□ -0.07
COL6A3-213ENST00000493475 CASP8AP2Q9UKL3 1982 aa14.6□□□□□ -0.07
COL6A3-213ENST00000493475 MANSC4A6NHS7 340 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-213ENST00000493475 WTIPA6NIX2 430 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-213ENST00000493475 F6X3S4 739 aa14.59□□□□□ -0.07
COL6A3-213ENST00000493475 IREB2P48200 963 aaKnown RBP14.59□□□□□ -0.07
COL6A3-213ENST00000493475 TM4SF4P48230 202 aa14.59□□□□□ -0.07
COL6A3-213ENST00000493475 FOXO4P98177 505 aa14.59□□□□□ -0.07
COL6A3-213ENST00000493475 NOM1Q5C9Z4 860 aaKnown RBP14.59□□□□□ -0.07
COL6A3-213ENST00000493475 PRAMEF18Q5VWM3 479 aa14.59□□□□□ -0.07
COL6A3-213ENST00000493475 HELBQ8NG08 1087 aaPredicted RBP14.59□□□□□ -0.07
COL6A3-213ENST00000493475 SLC10A4Q96EP9 437 aa14.59□□□□□ -0.07
COL6A3-213ENST00000493475 FRAT2O75474 233 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-213ENST00000493475 ZBTB48P10074 688 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-213ENST00000493475 KLRK1P26718 216 aa14.58□□□□□ -0.08
COL6A3-213ENST00000493475 PRKG1Q13976 671 aa14.58□□□□□ -0.08
COL6A3-213ENST00000493475 UBE4AQ14139 1066 aa14.58□□□□□ -0.08
COL6A3-213ENST00000493475 CFAP100Q494V2 611 aa14.58□□□□□ -0.08
COL6A3-213ENST00000493475 MOB2Q70IA6 237 aa14.58□□□□□ -0.08
COL6A3-213ENST00000493475 VEZTQ9HBM0 779 aa14.58□□□□□ -0.08
COL6A3-213ENST00000493475 SCAF8Q9UPN6 1271 aaKnown RBP14.58□□□□□ -0.08
COL6A3-213ENST00000493475 MROH5Q6ZUA9 1318 aa14.58□□□□□ -0.08
COL6A3-213ENST00000493475 F8W031 263 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-213ENST00000493475 HIBADHP31937 336 aaKnown RBP14.57□□□□□ -0.08
COL6A3-213ENST00000493475 TNNI2P48788 182 aa14.57□□□□□ -0.08
COL6A3-213ENST00000493475 CAVIN4Q5BKX8 364 aa14.57□□□□□ -0.08
COL6A3-213ENST00000493475 GPR25O00155 361 aa14.56□□□□□ -0.08
COL6A3-213ENST00000493475 FKTNO75072 461 aa14.56□□□□□ -0.08
COL6A3-213ENST00000493475 WDHD1O75717 1129 aaPredicted RBP14.56□□□□□ -0.08
COL6A3-213ENST00000493475 TBC1D8O95759 1140 aa14.56□□□□□ -0.08
COL6A3-213ENST00000493475 PTPN12Q05209 780 aaKnown RBP14.56□□□□□ -0.08
COL6A3-213ENST00000493475 MKRN3Q13064 507 aaKnown RBP14.56□□□□□ -0.08
COL6A3-213ENST00000493475 MFSD14BQ5SR56 506 aa14.56□□□□□ -0.08
COL6A3-213ENST00000493475 SPRYD7Q5W111 196 aa14.56□□□□□ -0.08
COL6A3-213ENST00000493475 TBC1D22AQ8WUA7 517 aa14.56□□□□□ -0.08
COL6A3-213ENST00000493475 ZNF296Q8WUU4 475 aaPredicted RBP14.56□□□□□ -0.08
COL6A3-213ENST00000493475 ZBED3Q96IU2 234 aaPredicted RBP14.56□□□□□ -0.08
COL6A3-213ENST00000493475 SERPINA10Q9UK55 444 aa14.56□□□□□ -0.08
COL6A3-213ENST00000493475 PTPRCP08575 1304 aa14.56□□□□□ -0.08
COL6A3-213ENST00000493475 MAP3K11Q16584 847 aa14.55□□□□□ -0.08
COL6A3-213ENST00000493475 LDLRAD1Q5T700 205 aa14.55□□□□□ -0.08
COL6A3-213ENST00000493475 LHX8Q68G74 356 aa14.55□□□□□ -0.08
COL6A3-213ENST00000493475 ANKRD13AQ8IZ07 590 aa14.55□□□□□ -0.08
COL6A3-213ENST00000493475 HOOK2Q96ED9 719 aa14.55□□□□□ -0.08
COL6A3-213ENST00000493475 CFHR5Q9BXR6 569 aa14.55□□□□□ -0.08
COL6A3-213ENST00000493475 CLRN2A0PK11 232 aa14.54□□□□□ -0.08
COL6A3-213ENST00000493475 ARHGEF6Q15052 776 aa14.54□□□□□ -0.08
COL6A3-213ENST00000493475 ZNF594Q96JF6 807 aaPredicted RBP14.54□□□□□ -0.08
COL6A3-213ENST00000493475 TMOD2Q9NZR1 351 aa14.54□□□□□ -0.08
COL6A3-213ENST00000493475 TTF2Q9UNY4 1162 aaKnown RBP14.54□□□□□ -0.08
COL6A3-213ENST00000493475 HDAC5Q9UQL6 1122 aa14.54□□□□□ -0.08
COL6A3-213ENST00000493475 FAM205AQ6ZU69 1335 aa14.54□□□□□ -0.08
COL6A3-213ENST00000493475 MAST3O60307 1309 aa14.53□□□□□ -0.08
COL6A3-213ENST00000493475 E9PSI1 815 aa14.53□□□□□ -0.08
COL6A3-213ENST00000493475 SOX10P56693 466 aa14.53□□□□□ -0.08
COL6A3-213ENST00000493475 METTL24Q5JXM2 366 aa14.53□□□□□ -0.08
COL6A3-213ENST00000493475 FBXO46Q6PJ61 603 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-213ENST00000493475 CERS5Q8N5B7 392 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms