RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 ZBTB47Q9UFB7 747 aaPredicted RBP13.36□□□□□ -0.27
VPS13D-210ENST00000489961 IQSEC3Q9UPP2 1182 aaPredicted RBP13.36□□□□□ -0.27
VPS13D-210ENST00000489961 FAM205AQ6ZU69 1335 aa13.36□□□□□ -0.27
VPS13D-210ENST00000489961 IFIT2P09913 472 aaKnown RBP13.35□□□□□ -0.27
VPS13D-210ENST00000489961 UQCRFS1P1P0C7P4 283 aa13.35□□□□□ -0.27
VPS13D-210ENST00000489961 SCNN1DP51172 638 aa13.35□□□□□ -0.27
VPS13D-210ENST00000489961 FKBP1AP62942 108 aaKnown RBP13.35□□□□□ -0.27
VPS13D-210ENST00000489961 CHAF1AQ13111 956 aaPredicted RBP13.35□□□□□ -0.27
VPS13D-210ENST00000489961 CCDC158Q5M9N0 1113 aa13.35□□□□□ -0.27
VPS13D-210ENST00000489961 DPF2Q92785 391 aa13.35□□□□□ -0.27
VPS13D-210ENST00000489961 DBNDD2Q9BQY9 259 aa13.35□□□□□ -0.27
VPS13D-210ENST00000489961 CCDC8Q9H0W5 538 aaPredicted RBP13.35□□□□□ -0.27
VPS13D-210ENST00000489961 BCL11AQ9H165 835 aa13.35□□□□□ -0.27
VPS13D-210ENST00000489961 GPRC5DQ9NZD1 345 aa13.35□□□□□ -0.27
VPS13D-210ENST00000489961 HACL1Q9UJ83 578 aa13.35□□□□□ -0.27
VPS13D-210ENST00000489961 DENND2AQ9ULE3 1009 aa13.35□□□□□ -0.27
VPS13D-210ENST00000489961 ZBTB12Q9Y330 459 aaPredicted RBP13.35□□□□□ -0.27
VPS13D-210ENST00000489961 H7C1D1 291 aa13.34□□□□□ -0.27
VPS13D-210ENST00000489961 ZBTB22O15209 634 aa13.34□□□□□ -0.27
VPS13D-210ENST00000489961 TTC39AQ5SRH9 613 aa13.34□□□□□ -0.27
VPS13D-210ENST00000489961 TBC1D22AQ8WUA7 517 aa13.34□□□□□ -0.27
VPS13D-210ENST00000489961 CNOT7Q9UIV1 285 aaKnown RBP13.34□□□□□ -0.27
VPS13D-210ENST00000489961 DBNLQ9UJU6 430 aaKnown RBP13.34□□□□□ -0.27
VPS13D-210ENST00000489961 JAG2Q9Y219 1238 aa13.34□□□□□ -0.27
VPS13D-210ENST00000489961 POTECB2RU33 542 aa13.33□□□□□ -0.28
VPS13D-210ENST00000489961 ARID4AP29374 1257 aaPredicted RBP13.33□□□□□ -0.28
VPS13D-210ENST00000489961 MFSD14BQ5SR56 506 aa13.33□□□□□ -0.28
VPS13D-210ENST00000489961 C16orf71Q8IYS4 520 aaPredicted RBP13.33□□□□□ -0.28
VPS13D-210ENST00000489961 WDR66Q8TBY9 1149 aa13.33□□□□□ -0.28
VPS13D-210ENST00000489961 MXD3Q9BW11 206 aa13.33□□□□□ -0.28
VPS13D-210ENST00000489961 SMARCA5O60264 1052 aaPredicted RBP13.32□□□□□ -0.28
VPS13D-210ENST00000489961 IGHDP01880 384 aa13.32□□□□□ -0.28
VPS13D-210ENST00000489961 USP17L8P0C7I0 530 aa13.32□□□□□ -0.28
VPS13D-210ENST00000489961 EPHX2P34913 555 aa13.32□□□□□ -0.28
VPS13D-210ENST00000489961 EPS15P42566 896 aa13.32□□□□□ -0.28
VPS13D-210ENST00000489961 MMP14P50281 582 aa13.32□□□□□ -0.28
VPS13D-210ENST00000489961 RASGRF1Q13972 1273 aa13.32□□□□□ -0.28
VPS13D-210ENST00000489961 PNMA8AQ86V59 439 aaPredicted RBP13.32□□□□□ -0.28
VPS13D-210ENST00000489961 MICALL2Q8IY33 904 aa13.32□□□□□ -0.28
VPS13D-210ENST00000489961 OGFOD1Q8N543 542 aa13.32□□□□□ -0.28
VPS13D-210ENST00000489961 GMLQ99445 158 aa13.32□□□□□ -0.28
VPS13D-210ENST00000489961 TAF1DQ9H5J8 278 aaPredicted RBP13.32□□□□□ -0.28
VPS13D-210ENST00000489961 ADARB2Q9NS39 739 aaKnown RBP13.32□□□□□ -0.28
VPS13D-210ENST00000489961 TLR7Q9NYK1 1049 aaKnown RBP13.32□□□□□ -0.28
VPS13D-210ENST00000489961 HDAC9Q9UKV0 1011 aa13.32□□□□□ -0.28
VPS13D-210ENST00000489961 PDS5AQ29RF7 1337 aaKnown RBP13.32□□□□□ -0.28
VPS13D-210ENST00000489961 COL1A1P02452 1464 aaPredicted RBP13.31□□□□□ -0.28
VPS13D-210ENST00000489961 KIF3CO14782 793 aa13.31□□□□□ -0.28
VPS13D-210ENST00000489961 ANKRD45Q5TZF3 282 aa13.31□□□□□ -0.28
VPS13D-210ENST00000489961 KIAA0825Q8IV33 1275 aa13.31□□□□□ -0.28
VPS13D-210ENST00000489961 SMC5Q8IY18 1101 aa13.31□□□□□ -0.28
VPS13D-210ENST00000489961 ZGPATQ8N5A5 531 aaKnown RBP13.31□□□□□ -0.28
VPS13D-210ENST00000489961 CERS5Q8N5B7 392 aa13.31□□□□□ -0.28
VPS13D-210ENST00000489961 ZNF512BQ96KM6 892 aaPredicted RBP13.31□□□□□ -0.28
VPS13D-210ENST00000489961 ZNF280AP59817 542 aaPredicted RBP13.3□□□□□ -0.28
VPS13D-210ENST00000489961 USP50Q70EL3 339 aaPredicted RBP13.3□□□□□ -0.28
VPS13D-210ENST00000489961 SPATA5Q8NB90 893 aa13.3□□□□□ -0.28
VPS13D-210ENST00000489961 GPATCH3Q96I76 525 aa13.3□□□□□ -0.28
VPS13D-210ENST00000489961 HMG20BQ9P0W2 317 aa13.3□□□□□ -0.28
VPS13D-210ENST00000489961 SUGT1Q9Y2Z0 365 aa13.3□□□□□ -0.28
VPS13D-210ENST00000489961 SALL1Q9NSC2 1324 aa13.3□□□□□ -0.28
VPS13D-210ENST00000489961 AKAP11Q9UKA4 1901 aa13.29□□□□□ -0.28
VPS13D-210ENST00000489961 SHTN1A0MZ66 631 aa13.29□□□□□ -0.28
VPS13D-210ENST00000489961 F8W031 263 aaPredicted RBP13.29□□□□□ -0.28
VPS13D-210ENST00000489961 MCAMP43121 646 aa13.29□□□□□ -0.28
VPS13D-210ENST00000489961 EAPPQ56P03 285 aaPredicted RBP13.29□□□□□ -0.28
VPS13D-210ENST00000489961 MYOZ2Q9NPC6 264 aa13.29□□□□□ -0.28
VPS13D-210ENST00000489961 TTF2Q9UNY4 1162 aaKnown RBP13.29□□□□□ -0.28
VPS13D-210ENST00000489961 MAST3O60307 1309 aa13.29□□□□□ -0.28
VPS13D-210ENST00000489961 LDHBP07195 334 aaKnown RBP13.28□□□□□ -0.28
VPS13D-210ENST00000489961 SCARF1Q14162 830 aa13.28□□□□□ -0.28
VPS13D-210ENST00000489961 KIF4BQ2VIQ3 1234 aa13.28□□□□□ -0.28
VPS13D-210ENST00000489961 TBC1D10BQ4KMP7 808 aaPredicted RBP13.28□□□□□ -0.28
VPS13D-210ENST00000489961 RBM26Q5T8P6 1007 aaKnown RBP13.28□□□□□ -0.28
VPS13D-210ENST00000489961 SPTY2D1Q68D10 685 aaPredicted RBP13.28□□□□□ -0.28
VPS13D-210ENST00000489961 B4GALNT3Q6L9W6 998 aa13.28□□□□□ -0.28
VPS13D-210ENST00000489961 SAMD7Q7Z3H4 446 aa13.28□□□□□ -0.28
VPS13D-210ENST00000489961 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.28□□□□□ -0.28
VPS13D-210ENST00000489961 ABCF2Q9UG63 623 aa13.28□□□□□ -0.28
VPS13D-210ENST00000489961 CLEC11AQ9Y240 323 aa13.28□□□□□ -0.28
VPS13D-210ENST00000489961 TOMM70O94826 608 aa13.27□□□□□ -0.29
VPS13D-210ENST00000489961 PI16Q6UXB8 463 aa13.27□□□□□ -0.29
VPS13D-210ENST00000489961 LDHDQ86WU2 507 aa13.27□□□□□ -0.29
VPS13D-210ENST00000489961 TRPM4Q8TD43 1214 aa13.27□□□□□ -0.29
VPS13D-210ENST00000489961 SNRKQ9NRH2 765 aa13.27□□□□□ -0.29
VPS13D-210ENST00000489961 ECHDC1Q9NTX5 307 aa13.27□□□□□ -0.29
VPS13D-210ENST00000489961 ATP5JP18859 108 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 PRDX5P30044 214 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 ZAP70P43403 619 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 RBM5P52756 815 aaKnown RBP eCLIP13.26□□□□□ -0.29
VPS13D-210ENST00000489961 HDLBPQ00341 1268 aaKnown RBP13.26□□□□□ -0.29
VPS13D-210ENST00000489961 NUCB1Q02818 461 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 DLGAP5Q15398 846 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 GRIK5Q16478 980 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 ERICH6BQ5W0A0 696 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 ERICH6Q7L0X2 663 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 CHD1LQ86WJ1 897 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 DZIP1Q86YF9 867 aaKnown RBP13.26□□□□□ -0.29
VPS13D-210ENST00000489961 ADAMTSL1Q8N6G6 1762 aa13.26□□□□□ -0.29
VPS13D-210ENST00000489961 RBM46Q8TBY0 533 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms